Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 N 1.46498 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.46500 * 120.00066 * 274.99930 * 4 3 2 6 6 C 1.53005 * 109.47082 * 85.00088 * 5 4 3 7 7 C 1.53002 * 117.49810 * 243.62566 * 6 5 4 8 8 C 1.52998 * 117.49926 * 175.00195 * 6 5 4 9 9 S 1.65599 * 119.99829 * 95.00064 * 4 3 2 10 10 O 1.42101 * 106.40293 * 203.53629 * 9 4 3 11 11 O 1.42093 * 106.40502 * 336.46069 * 9 4 3 12 12 N 1.65603 * 107.21666 * 90.00308 * 9 4 3 13 13 C 1.46498 * 120.00182 * 64.99580 * 12 9 4 14 14 C 1.53008 * 109.46901 * 164.42017 * 13 12 9 15 15 C 1.50701 * 115.55095 * 65.12272 * 14 13 12 16 16 H 1.08002 * 119.99788 * 264.73881 * 15 14 13 17 17 C 1.37877 * 119.99817 * 84.73078 * 15 14 13 18 18 N 1.31515 * 120.00407 * 352.55467 * 17 15 14 19 19 Si 1.86800 * 119.99804 * 172.55680 * 17 15 14 20 20 H 1.48506 * 109.47232 * 59.99735 * 19 17 15 21 21 H 1.48500 * 109.47414 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47114 * 300.00595 * 19 17 15 23 23 C 1.52990 * 117.49964 * 279.45044 * 14 13 12 24 24 C 1.52995 * 117.49705 * 210.78725 * 14 13 12 25 25 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46637 * 299.99314 * 1 2 3 27 27 H 1.08999 * 109.47695 * 59.99743 * 1 2 3 28 28 H 1.08999 * 109.46637 * 240.00686 * 2 1 3 29 29 H 1.08999 * 109.47209 * 120.00469 * 2 1 3 30 30 H 1.08999 * 109.47114 * 300.00612 * 3 2 1 31 31 H 1.09001 * 109.46717 * 60.00069 * 3 2 1 32 32 H 1.08999 * 109.47164 * 205.00117 * 5 4 3 33 33 H 1.09000 * 109.46925 * 325.00377 * 5 4 3 34 34 H 1.09004 * 115.54553 * 29.33081 * 6 5 4 35 35 H 1.08992 * 117.49886 * 359.97438 * 7 6 5 36 36 H 1.09003 * 117.49887 * 145.02240 * 7 6 5 37 37 H 1.09003 * 117.49822 * 214.98150 * 8 6 5 38 38 H 1.08995 * 117.49873 * 359.97438 * 8 6 5 39 39 H 0.96998 * 119.99741 * 244.99974 * 12 9 4 40 40 H 1.09003 * 109.47400 * 284.41515 * 13 12 9 41 41 H 1.09002 * 109.47120 * 44.42329 * 13 12 9 42 42 H 0.96994 * 119.99823 * 185.02278 * 18 17 15 43 43 H 1.09006 * 117.49755 * 359.97438 * 23 14 13 44 44 H 1.08999 * 117.50153 * 145.02201 * 23 14 13 45 45 H 1.08997 * 117.50048 * 214.97651 * 24 14 13 46 46 H 1.09007 * 117.49868 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.3318 1.2629 6 6 4.3844 -0.1438 1.6400 7 6 3.7028 -0.6152 2.9262 8 6 5.2257 -0.4777 2.8735 9 16 4.3323 1.5678 -1.4296 10 8 5.6154 1.0013 -1.2015 11 8 3.4503 1.1104 -2.4454 12 7 4.5774 3.1806 -1.7145 13 6 5.4258 3.9632 -0.8123 14 6 5.8033 5.2844 -1.4854 15 6 4.6592 6.2283 -1.7519 16 1 4.1770 6.2331 -2.7183 17 6 4.2278 7.0856 -0.7619 18 7 4.7127 6.9808 0.4561 19 14 2.9545 8.3959 -1.1507 20 1 1.7081 7.7476 -1.6322 21 1 2.6617 9.1809 0.0753 22 1 3.4807 9.3003 -2.2044 23 6 6.9488 5.2588 -2.4992 24 6 7.1570 5.8994 -1.1247 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 5.2262 1.7777 1.1500 33 1 3.6910 1.8547 2.0474 34 1 4.4188 -0.8416 0.8033 35 1 3.1505 0.1259 3.5039 36 1 3.2885 -1.6234 2.9359 37 1 5.8134 -1.3954 2.8486 38 1 5.6753 0.3538 3.4161 39 1 4.1590 3.6072 -2.4786 40 1 4.8833 4.1677 0.1107 41 1 6.3308 3.3998 -0.5847 42 1 4.3573 7.5344 1.1688 43 1 7.4338 4.3007 -2.6865 44 1 6.8750 5.9249 -3.3589 45 1 7.2202 6.9867 -1.0807 46 1 7.7785 5.3630 -0.4076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429977914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -40.917211 kcal Electronic energy + Delta-G solvation = -26086.102974 eV Core-core repulsion = 22524.738469 eV Total energy + Delta-G solvation = -3561.364505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.20431 -37.13098 -36.80237 -35.79548 -35.42094 -33.23265 -32.67139 -31.99295 -27.52422 -25.96010 -24.91296 -24.81963 -22.43065 -21.54835 -21.14387 -20.68117 -19.48441 -18.87435 -17.47685 -16.98005 -16.44397 -16.11484 -15.30566 -14.79583 -14.73155 -14.55520 -14.44181 -14.03439 -13.62055 -13.39745 -13.05098 -12.81853 -12.43820 -12.35749 -12.15603 -12.02349 -11.82095 -11.66989 -11.60205 -11.49402 -11.33287 -11.30050 -11.14442 -11.04443 -10.98554 -10.61872 -10.54061 -10.38846 -10.24987 -9.88651 -9.60363 -9.11071 -8.94351 -8.64881 -8.46317 -8.18255 -6.12381 -4.19131 1.03172 3.24091 3.24668 3.29644 3.32875 3.78622 3.95850 4.32355 4.60235 4.77575 4.79447 4.94289 4.99531 5.09110 5.15567 5.16946 5.30401 5.34144 5.45397 5.59076 5.61324 5.70985 5.74383 5.82460 5.84525 5.89016 6.00568 6.01935 6.07898 6.20816 6.24325 6.28989 6.35605 6.36356 6.45214 6.56173 6.74032 6.77191 7.03858 7.06018 7.38144 7.51060 7.77004 7.80863 8.33662 8.81810 9.47175 10.95624 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004678 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.189158 B = 5984.167652 C = 6410.971976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.130 3.870 4 N -1.002 6.002 5 C 0.156 3.844 6 C -0.163 4.163 7 C -0.180 4.180 8 C -0.176 4.176 9 S 2.782 3.218 10 O -0.984 6.984 11 O -0.990 6.990 12 N -1.107 6.107 13 C 0.163 3.837 14 C 0.036 3.964 15 C -0.496 4.496 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.877 5.877 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.209 4.209 24 C -0.152 4.152 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.418 0.582 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.261 0.739 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -12.161 4.580 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.004 3.996 4 N -0.839 5.839 5 C 0.030 3.970 6 C -0.183 4.183 7 C -0.217 4.217 8 C -0.213 4.213 9 S 2.790 3.210 10 O -0.967 6.967 11 O -0.974 6.974 12 N -0.870 5.870 13 C 0.037 3.963 14 C 0.034 3.966 15 C -0.534 4.534 16 H 0.078 0.922 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.247 4.247 24 C -0.191 4.191 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.733 -12.827 4.381 14.059 hybrid contribution -0.992 1.263 -0.111 1.609 sum -4.724 -11.564 4.270 13.201 Atomic orbital electron populations 1.21693 0.95484 1.01580 1.01912 1.22028 0.95926 0.97698 1.02891 1.21253 0.78339 0.96761 1.03250 1.57921 1.14902 1.88428 1.22607 1.20824 0.96749 0.93478 0.85913 1.22806 1.04903 0.98257 0.92350 1.23032 0.95308 1.02361 1.01031 1.22938 0.93583 1.03350 1.01472 1.01903 0.73198 0.73525 0.72406 1.93583 1.40457 1.77070 1.85590 1.93569 1.66816 1.80414 1.56638 1.55568 1.63110 1.28936 1.39399 1.20854 0.91413 0.91924 0.92091 1.18921 0.88659 0.92613 0.96430 1.20325 1.16053 1.18128 0.98887 0.92208 1.24958 0.96082 0.96760 0.95112 1.69953 1.41307 1.39892 1.00188 0.86718 0.81771 0.82097 0.77738 1.20240 1.21331 1.20200 1.23017 1.07199 1.00663 0.93781 1.22540 1.01445 0.99405 0.95687 0.92791 0.92727 0.92476 0.91554 0.91143 0.90185 0.90548 0.89501 0.90141 0.87750 0.88741 0.89186 0.88868 0.88495 0.74740 0.91344 0.93738 0.92872 0.91434 0.90377 0.89923 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.15 -1.69 6.04 -26.73 -0.16 -1.85 16 3 C 0.13 1.66 5.37 -4.04 -0.02 1.64 16 4 N -1.00 -14.52 2.87 -114.38 -0.33 -14.85 16 5 C 0.16 2.07 5.65 -4.04 -0.02 2.04 16 6 C -0.16 -1.95 4.80 -90.62 -0.44 -2.38 16 7 C -0.18 -1.74 9.60 -26.73 -0.26 -1.99 16 8 C -0.18 -1.81 10.25 -26.73 -0.27 -2.09 16 9 S 2.78 48.82 6.05 -107.50 -0.65 48.17 16 10 O -0.98 -19.35 16.57 -57.17 -0.95 -20.30 16 11 O -0.99 -18.94 17.11 -57.17 -0.98 -19.92 16 12 N -1.11 -20.83 6.01 -10.61 -0.06 -20.90 16 13 C 0.16 3.39 6.08 -4.04 -0.02 3.37 16 14 C 0.04 0.82 1.43 -155.66 -0.22 0.60 16 15 C -0.50 -12.48 8.47 -34.44 -0.29 -12.77 16 16 H 0.06 1.50 7.83 -52.49 -0.41 1.09 16 17 C 0.07 1.91 5.38 -17.82 -0.10 1.81 16 18 N -0.88 -23.05 12.97 55.43 0.72 -22.33 16 19 Si 0.89 20.02 29.55 -169.99 -5.02 15.00 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.21 -4.43 9.96 -26.70 -0.27 -4.69 16 24 C -0.15 -3.40 9.48 -26.70 -0.25 -3.66 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.75 6.50 -51.93 -0.34 0.42 16 30 H 0.08 1.07 7.61 -51.93 -0.40 0.68 16 31 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 32 H 0.09 1.24 7.61 -51.93 -0.40 0.84 16 33 H 0.08 0.94 7.74 -51.93 -0.40 0.54 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.42 7.84 8.38 -34.47 -0.29 7.55 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.04 0.90 7.69 -51.93 -0.40 0.50 16 42 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 46 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -29.12 388.42 -11.47 -40.58 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.09 Total: 9.73 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.96 Total: -21.04 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.33 Total: -58.07 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.93 Total: -40.22 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 48.82 SS G_CDS: -0.65 Total: 48.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.12 -11.47 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429977914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.335 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds