Wall clock time and date at job start Tue Mar 31 2020 11:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 N 1.46498 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.46500 * 120.00066 * 274.99930 * 4 3 2 6 6 C 1.53005 * 109.47082 * 85.00088 * 5 4 3 7 7 C 1.53002 * 117.49810 * 243.62566 * 6 5 4 8 8 C 1.52998 * 117.49926 * 175.00195 * 6 5 4 9 9 S 1.65599 * 119.99829 * 95.00064 * 4 3 2 10 10 O 1.42101 * 106.40293 * 203.53629 * 9 4 3 11 11 O 1.42093 * 106.40502 * 336.46069 * 9 4 3 12 12 N 1.65603 * 107.21666 * 90.00308 * 9 4 3 13 13 C 1.46498 * 120.00182 * 64.99580 * 12 9 4 14 14 C 1.53008 * 109.46901 * 164.42017 * 13 12 9 15 15 C 1.50701 * 115.55095 * 65.12272 * 14 13 12 16 16 H 1.08002 * 119.99788 * 264.73881 * 15 14 13 17 17 C 1.37877 * 119.99817 * 84.73078 * 15 14 13 18 18 N 1.31515 * 120.00407 * 352.55467 * 17 15 14 19 19 Si 1.86800 * 119.99804 * 172.55680 * 17 15 14 20 20 H 1.48506 * 109.47232 * 59.99735 * 19 17 15 21 21 H 1.48500 * 109.47414 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47114 * 300.00595 * 19 17 15 23 23 C 1.52990 * 117.49964 * 279.45044 * 14 13 12 24 24 C 1.52995 * 117.49705 * 210.78725 * 14 13 12 25 25 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46637 * 299.99314 * 1 2 3 27 27 H 1.08999 * 109.47695 * 59.99743 * 1 2 3 28 28 H 1.08999 * 109.46637 * 240.00686 * 2 1 3 29 29 H 1.08999 * 109.47209 * 120.00469 * 2 1 3 30 30 H 1.08999 * 109.47114 * 300.00612 * 3 2 1 31 31 H 1.09001 * 109.46717 * 60.00069 * 3 2 1 32 32 H 1.08999 * 109.47164 * 205.00117 * 5 4 3 33 33 H 1.09000 * 109.46925 * 325.00377 * 5 4 3 34 34 H 1.09004 * 115.54553 * 29.33081 * 6 5 4 35 35 H 1.08992 * 117.49886 * 359.97438 * 7 6 5 36 36 H 1.09003 * 117.49887 * 145.02240 * 7 6 5 37 37 H 1.09003 * 117.49822 * 214.98150 * 8 6 5 38 38 H 1.08995 * 117.49873 * 359.97438 * 8 6 5 39 39 H 0.96998 * 119.99741 * 244.99974 * 12 9 4 40 40 H 1.09003 * 109.47400 * 284.41515 * 13 12 9 41 41 H 1.09002 * 109.47120 * 44.42329 * 13 12 9 42 42 H 0.96994 * 119.99823 * 185.02278 * 18 17 15 43 43 H 1.09006 * 117.49755 * 359.97438 * 23 14 13 44 44 H 1.08999 * 117.50153 * 145.02201 * 23 14 13 45 45 H 1.08997 * 117.50048 * 214.97651 * 24 14 13 46 46 H 1.09007 * 117.49868 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.3318 1.2629 6 6 4.3844 -0.1438 1.6400 7 6 3.7028 -0.6152 2.9262 8 6 5.2257 -0.4777 2.8735 9 16 4.3323 1.5678 -1.4296 10 8 5.6154 1.0013 -1.2015 11 8 3.4503 1.1104 -2.4454 12 7 4.5774 3.1806 -1.7145 13 6 5.4258 3.9632 -0.8123 14 6 5.8033 5.2844 -1.4854 15 6 4.6592 6.2283 -1.7519 16 1 4.1770 6.2331 -2.7183 17 6 4.2278 7.0856 -0.7619 18 7 4.7127 6.9808 0.4561 19 14 2.9545 8.3959 -1.1507 20 1 1.7081 7.7476 -1.6322 21 1 2.6617 9.1809 0.0753 22 1 3.4807 9.3003 -2.2044 23 6 6.9488 5.2588 -2.4992 24 6 7.1570 5.8994 -1.1247 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 5.2262 1.7777 1.1500 33 1 3.6910 1.8547 2.0474 34 1 4.4188 -0.8416 0.8033 35 1 3.1505 0.1259 3.5039 36 1 3.2885 -1.6234 2.9359 37 1 5.8134 -1.3954 2.8486 38 1 5.6753 0.3538 3.4161 39 1 4.1590 3.6072 -2.4786 40 1 4.8833 4.1677 0.1107 41 1 6.3308 3.3998 -0.5847 42 1 4.3573 7.5344 1.1688 43 1 7.4338 4.3007 -2.6865 44 1 6.8750 5.9249 -3.3589 45 1 7.2202 6.9867 -1.0807 46 1 7.7785 5.3630 -0.4076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429977914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:23 Heat of formation + Delta-G solvation = -57.907199 kcal Electronic energy + Delta-G solvation = -26086.839715 eV Core-core repulsion = 22524.738469 eV Total energy + Delta-G solvation = -3562.101246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.17278 -38.81772 -38.32568 -36.93677 -36.76096 -34.83713 -33.91494 -33.63565 -28.49919 -27.80330 -26.63027 -25.86242 -23.20145 -22.90484 -22.51717 -21.62075 -21.23500 -20.28314 -18.76498 -18.52160 -17.97958 -17.47239 -16.66441 -16.57900 -15.92524 -15.76202 -15.51366 -15.35467 -15.06309 -14.58434 -14.33700 -14.26620 -13.95338 -13.76816 -13.41847 -13.24139 -13.20431 -13.01055 -12.94741 -12.91054 -12.79845 -12.63802 -12.41134 -12.32451 -12.28319 -12.03978 -12.01624 -11.53449 -11.38222 -11.26428 -10.86747 -10.75334 -10.47399 -10.26976 -10.02712 -9.94869 -8.06511 -6.17323 -0.37324 1.44814 1.47873 1.52989 1.92007 2.45221 2.53865 2.95287 3.20894 3.33740 3.54076 3.67103 3.86960 4.05811 4.10452 4.17581 4.20727 4.26568 4.42929 4.50270 4.55267 4.62872 4.66482 4.69043 4.77501 4.79016 4.81488 4.85715 4.99498 5.02118 5.05179 5.08989 5.21545 5.26855 5.28484 5.32723 5.33348 5.38195 5.48510 5.63249 5.67427 5.74884 5.81595 6.24842 6.43629 6.87165 7.50627 9.00789 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004678 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.189158 B = 5984.167652 C = 6410.971976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.122 3.878 4 N -0.996 5.996 5 C 0.152 3.848 6 C -0.183 4.183 7 C -0.160 4.160 8 C -0.176 4.176 9 S 2.797 3.203 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.110 6.110 13 C 0.177 3.823 14 C 0.013 3.987 15 C -0.506 4.506 16 H 0.054 0.946 17 C 0.036 3.964 18 N -0.899 5.899 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.193 4.193 24 C -0.156 4.156 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.261 0.739 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -12.798 5.518 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.003 4.003 4 N -0.835 5.835 5 C 0.027 3.973 6 C -0.204 4.204 7 C -0.197 4.197 8 C -0.214 4.214 9 S 2.805 3.195 10 O -0.989 6.989 11 O -0.991 6.991 12 N -0.871 5.871 13 C 0.050 3.950 14 C 0.011 3.989 15 C -0.544 4.544 16 H 0.072 0.928 17 C -0.166 4.166 18 N -0.536 5.536 19 Si 0.768 3.232 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.230 4.230 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.251 0.749 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.725 -13.465 5.301 15.223 hybrid contribution -0.674 1.434 -0.397 1.634 sum -5.400 -12.031 4.904 14.070 Atomic orbital electron populations 1.21686 0.93900 1.02496 1.02336 1.21991 0.97248 0.96485 1.02427 1.21491 0.77093 0.97969 1.03780 1.57691 1.15654 1.88107 1.22067 1.20963 0.96098 0.94742 0.85491 1.22671 1.07755 0.96977 0.92947 1.23106 0.94820 1.03160 0.98580 1.23044 0.94459 1.03764 1.00119 1.01316 0.72626 0.72877 0.72673 1.93545 1.41971 1.77363 1.86054 1.93541 1.67075 1.80503 1.57965 1.55552 1.63161 1.29068 1.39304 1.20569 0.91617 0.91202 0.91589 1.19072 0.88553 0.93389 0.97919 1.20540 1.16582 1.18637 0.98601 0.92776 1.25519 0.97746 0.98233 0.95073 1.70039 1.42318 1.40608 1.00684 0.85881 0.80016 0.79960 0.77295 1.19766 1.21268 1.20403 1.23010 1.05711 1.01133 0.93131 1.22480 1.01556 0.98436 0.96980 0.91667 0.91338 0.93031 0.93565 0.90064 0.91123 0.88536 0.91033 0.88387 0.89241 0.87620 0.87962 0.88240 0.88085 0.74865 0.92602 0.93246 0.93000 0.89860 0.90240 0.91813 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 71.98 0.71 -1.83 16 2 C -0.14 -3.09 6.04 30.60 0.18 -2.90 16 3 C 0.12 2.98 5.37 86.38 0.46 3.45 16 4 N -1.00 -28.31 2.87 -515.78 -1.48 -29.79 16 5 C 0.15 3.89 5.65 86.38 0.49 4.38 16 6 C -0.18 -4.15 4.80 -10.79 -0.05 -4.20 16 7 C -0.16 -2.65 9.60 30.60 0.29 -2.36 16 8 C -0.18 -3.32 10.25 30.59 0.31 -3.01 16 9 S 2.80 98.27 6.05 -56.49 -0.34 97.93 16 10 O -1.01 -39.70 16.57 -128.00 -2.12 -41.82 16 11 O -1.01 -38.65 17.11 -128.00 -2.19 -40.84 16 12 N -1.11 -41.73 6.01 -187.48 -1.13 -42.86 16 13 C 0.18 7.33 6.08 86.38 0.53 7.85 16 14 C 0.01 0.57 1.43 -52.93 -0.08 0.50 16 15 C -0.51 -25.37 8.47 25.60 0.22 -25.16 16 16 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 17 C 0.04 1.81 5.38 84.65 0.46 2.27 16 18 N -0.90 -47.19 12.97 21.45 0.28 -46.91 16 19 Si 0.94 40.82 29.55 68.60 2.03 42.85 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 C -0.19 -7.99 9.96 30.62 0.30 -7.68 16 24 C -0.16 -6.94 9.48 30.62 0.29 -6.65 16 25 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.57 6.50 -2.39 -0.02 1.56 16 30 H 0.07 1.86 7.61 -2.39 -0.02 1.84 16 31 H 0.10 1.98 8.00 -2.39 -0.02 1.96 16 32 H 0.07 2.03 7.61 -2.39 -0.02 2.01 16 33 H 0.10 2.12 7.74 -2.39 -0.02 2.10 16 34 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.11 1.54 8.03 -2.39 -0.02 1.53 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.42 15.71 8.38 -96.75 -0.81 14.90 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 1.98 7.69 -2.39 -0.02 1.96 16 42 H 0.26 13.21 8.32 -92.71 -0.77 12.44 16 43 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 44 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -60.62 388.42 -0.69 -61.31 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.14 Total: 35.48 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.12 Total: -35.34 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -2.33 Total: -119.56 kcal Atomic # 8 Polarization: -78.35 SS G_CDS: -4.31 Total: -82.66 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 98.27 SS G_CDS: -0.34 Total: 97.93 kcal Total: -60.62 -0.69 -61.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429977914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.402 kcal (2) G-P(sol) polarization free energy of solvation -60.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds