Wall clock time and date at job start Tue Mar 31 2020 10:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46837 * 111.00071 * 2 1 4 4 C 1.50142 * 110.27562 * 287.53874 * 3 2 1 5 5 C 1.29824 * 123.28541 * 342.94709 * 4 3 2 6 6 C 1.50694 * 118.55630 * 180.65842 * 5 4 3 7 7 N 1.46498 * 109.47424 * 94.72956 * 6 5 4 8 8 S 1.65598 * 120.00045 * 165.00086 * 7 6 5 9 9 O 1.42102 * 104.27730 * 181.07065 * 8 7 6 10 10 O 1.42096 * 104.27911 * 308.92784 * 8 7 6 11 11 C 1.81399 * 104.44999 * 65.00045 * 8 7 6 12 12 C 1.53001 * 109.47230 * 180.02562 * 11 8 7 13 13 C 1.53008 * 109.46872 * 299.99787 * 12 11 8 14 14 C 1.52995 * 109.47360 * 59.99817 * 12 11 8 15 15 C 1.50703 * 109.47150 * 180.02562 * 12 11 8 16 16 H 1.08000 * 120.00309 * 0.83412 * 15 12 11 17 17 C 1.37879 * 119.99966 * 180.83541 * 15 12 11 18 18 N 1.31511 * 119.99947 * 194.57862 * 17 15 12 19 19 Si 1.86798 * 119.99907 * 14.57442 * 17 15 12 20 20 H 1.48498 * 109.47127 * 84.45667 * 19 17 15 21 21 H 1.48501 * 109.47110 * 204.45301 * 19 17 15 22 22 H 1.48498 * 109.47182 * 324.45676 * 19 17 15 23 23 C 1.50306 * 122.89111 * 0.37440 * 5 4 3 24 24 C 1.47239 * 110.99701 * 237.06787 * 2 1 3 25 25 H 1.08998 * 109.47230 * 182.93107 * 1 2 3 26 26 H 1.08999 * 109.47426 * 302.92960 * 1 2 3 27 27 H 1.09002 * 109.47333 * 62.93140 * 1 2 3 28 28 H 1.09005 * 109.33385 * 47.78518 * 3 2 1 29 29 H 1.09000 * 109.33776 * 167.45263 * 3 2 1 30 30 H 1.08002 * 118.35521 * 162.97132 * 4 3 2 31 31 H 1.08999 * 109.47241 * 214.73118 * 6 5 4 32 32 H 1.09008 * 109.47208 * 334.73010 * 6 5 4 33 33 H 0.96997 * 120.00054 * 344.99973 * 7 6 5 34 34 H 1.08998 * 109.47304 * 300.00151 * 11 8 7 35 35 H 1.09003 * 109.47120 * 59.99973 * 11 8 7 36 36 H 1.09000 * 109.46833 * 70.23449 * 13 12 11 37 37 H 1.08994 * 109.46786 * 190.23160 * 13 12 11 38 38 H 1.09003 * 109.47078 * 310.23433 * 13 12 11 39 39 H 1.09000 * 109.47159 * 59.99939 * 14 12 11 40 40 H 1.08998 * 109.47354 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.46799 * 300.00440 * 14 12 11 42 42 H 0.96997 * 120.00179 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.43097 * 103.57705 * 23 5 4 44 44 H 1.08998 * 109.43300 * 223.48026 * 23 5 4 45 45 H 1.09001 * 109.63916 * 294.88683 * 24 2 1 46 46 H 1.09006 * 109.79973 * 174.38052 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 1.7855 2.0087 -1.3429 5 6 1.5193 1.3328 -2.4189 6 6 1.3434 2.0816 -3.7148 7 7 2.6140 2.1012 -4.4438 8 16 2.6430 2.5193 -6.0459 9 8 4.0108 2.4037 -6.4135 10 8 1.6520 1.6934 -6.6417 11 6 2.1221 4.2567 -6.0698 12 6 2.1079 4.7651 -7.5128 13 6 3.5117 4.6453 -8.1096 14 6 1.1294 3.9279 -8.3389 15 6 1.6757 6.2087 -7.5326 16 1 1.4483 6.7171 -6.6073 17 6 1.5707 6.8805 -8.7321 18 7 1.4779 8.1922 -8.7451 19 14 1.5604 5.9274 -10.3386 20 1 0.1807 5.4612 -10.6288 21 1 2.0271 6.8079 -11.4396 22 1 2.4652 4.7554 -10.2247 23 6 1.3849 -0.1642 -2.4302 24 6 1.9966 -0.7473 -1.1537 25 1 -0.3633 -1.0263 0.0525 26 1 -0.3634 0.5586 0.8625 27 1 -0.3634 0.4676 -0.9151 28 1 1.4794 1.9554 0.7618 29 1 3.0618 1.3480 0.2234 30 1 1.8601 3.0835 -1.4175 31 1 0.5846 1.5862 -4.3206 32 1 1.0296 3.1040 -3.5041 33 1 3.4382 1.8693 -3.9881 34 1 1.1219 4.3421 -5.6451 35 1 2.8190 4.8531 -5.4810 36 1 3.7524 3.5934 -8.2635 37 1 3.5464 5.1694 -9.0646 38 1 4.2362 5.0875 -7.4258 39 1 0.1293 4.0132 -7.9138 40 1 1.1196 4.2898 -9.3670 41 1 1.4424 2.8839 -8.3245 42 1 1.4036 8.6649 -9.5889 43 1 0.3298 -0.4332 -2.4823 44 1 1.9055 -0.5685 -3.2983 45 1 1.7245 -1.7990 -1.0644 46 1 3.0818 -0.6516 -1.1907 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451367294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:54 Heat of formation + Delta-G solvation = -34.250506 kcal Electronic energy + Delta-G solvation = -25645.467953 eV Core-core repulsion = 22084.392539 eV Total energy + Delta-G solvation = -3561.075415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02218 -36.77009 -36.75365 -35.98974 -35.48426 -32.40696 -31.97148 -31.26272 -28.10894 -27.44969 -26.40289 -25.51346 -25.02395 -23.87036 -22.04033 -19.99559 -18.90197 -18.07966 -17.43658 -16.76150 -16.16386 -15.95982 -15.70054 -15.45298 -15.20547 -14.87303 -14.77214 -14.33893 -13.85784 -13.39798 -13.29696 -13.13501 -12.93043 -12.85793 -12.54176 -12.48346 -12.34422 -12.16125 -11.98743 -11.63687 -11.59678 -11.54557 -11.40037 -11.12043 -11.03449 -11.02463 -10.78973 -10.19758 -10.08384 -10.05838 -9.48524 -9.26823 -9.02784 -8.76809 -8.65659 -8.49624 -6.21845 -4.19358 0.64389 1.75959 3.12738 3.23518 3.32773 3.37087 3.64755 4.11178 4.31960 4.37841 4.41743 4.61229 4.68600 4.80549 4.93304 5.06607 5.08194 5.18608 5.21010 5.27641 5.34407 5.36825 5.43273 5.49767 5.52503 5.55786 5.64485 5.69891 5.79707 5.96337 6.14933 6.17873 6.29351 6.41392 6.46637 6.52961 6.63374 6.67497 6.73292 6.84499 6.99929 7.10850 7.28862 7.60020 8.36109 8.80637 9.42124 10.90710 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.003233 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.172792 B = 8658.572437 C = 8998.919140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.079 3.921 4 C -0.173 4.173 5 C -0.125 4.125 6 C 0.149 3.851 7 N -1.123 6.123 8 S 2.591 3.409 9 O -0.963 6.963 10 O -0.964 6.964 11 C -0.574 4.574 12 C 0.054 3.946 13 C -0.171 4.171 14 C -0.181 4.181 15 C -0.509 4.509 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.874 3.126 20 H -0.281 1.281 21 H -0.301 1.301 22 H -0.246 1.246 23 C -0.124 4.124 24 C 0.051 3.949 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.266 0.734 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -15.113 16.458 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.256 5.256 3 C -0.049 4.049 4 C -0.194 4.194 5 C -0.127 4.127 6 C 0.023 3.977 7 N -0.880 5.880 8 S 2.688 3.312 9 O -0.953 6.953 10 O -0.954 6.954 11 C -0.707 4.707 12 C 0.052 3.948 13 C -0.228 4.228 14 C -0.238 4.238 15 C -0.548 4.548 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.706 3.294 20 H -0.208 1.208 21 H -0.229 1.229 22 H -0.172 1.172 23 C -0.162 4.162 24 C -0.077 4.077 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.208 -15.753 16.011 22.462 hybrid contribution -0.321 0.725 -1.189 1.429 sum -0.529 -15.028 14.822 21.114 Atomic orbital electron populations 1.22467 0.87445 1.02172 1.01188 1.62744 1.08414 1.13287 1.41135 1.21151 1.01367 0.88276 0.94142 1.22941 1.00087 1.00787 0.95586 1.20919 1.01873 0.95560 0.94372 1.20320 0.85961 0.99697 0.91711 1.55806 1.14383 1.86425 1.31432 1.05651 0.74703 0.78712 0.72117 1.93571 1.33954 1.87227 1.80581 1.93540 1.62061 1.65475 1.74336 1.30371 1.11620 1.20415 1.08338 1.18231 0.92943 0.97790 0.85871 1.22681 0.97787 0.99739 1.02588 1.22817 1.01436 0.98634 1.00936 1.20650 1.47254 0.91892 0.94957 0.90423 1.24966 0.94073 0.94533 0.99029 1.69932 1.48745 1.06712 1.27107 0.87436 0.79026 0.79764 0.83206 1.20795 1.22891 1.17180 1.21081 1.02457 0.92406 1.00272 1.22291 1.00072 0.98054 0.87330 0.91453 0.91477 0.94435 0.89636 0.89274 0.86706 0.89731 0.91187 0.75395 0.85840 0.85447 0.94448 0.91426 0.92331 0.91807 0.92995 0.93179 0.92390 0.90210 0.89873 0.90117 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 8.91 60.06 0.53 0.65 16 2 N -0.53 -4.28 5.29 -244.41 -1.29 -5.57 16 3 C 0.08 0.58 5.94 -5.28 -0.03 0.55 16 4 C -0.17 -1.45 9.06 -35.96 -0.33 -1.77 16 5 C -0.13 -1.17 4.65 -100.93 -0.47 -1.64 16 6 C 0.15 1.62 6.18 -5.20 -0.03 1.59 16 7 N -1.12 -13.89 5.88 -11.66 -0.07 -13.96 16 8 S 2.59 43.58 4.50 -107.50 -0.48 43.10 16 9 O -0.96 -18.59 15.93 -57.54 -0.92 -19.51 16 10 O -0.96 -18.38 15.12 -57.54 -0.87 -19.25 16 11 C -0.57 -10.32 4.99 37.16 0.19 -10.13 16 12 C 0.05 1.24 0.52 -155.66 -0.08 1.16 16 13 C -0.17 -3.84 6.95 37.16 0.26 -3.58 16 14 C -0.18 -4.04 7.22 37.16 0.27 -3.78 16 15 C -0.51 -13.62 8.62 -34.44 -0.30 -13.91 16 16 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 18 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 19 Si 0.87 21.48 22.79 -169.99 -3.87 17.61 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.25 -5.67 4.67 56.52 0.26 -5.40 16 23 C -0.12 -1.06 5.24 -28.03 -0.15 -1.21 16 24 C 0.05 0.39 6.06 -3.59 -0.02 0.37 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 27 H 0.04 0.29 5.68 -51.93 -0.29 0.00 16 28 H 0.09 0.56 7.98 -51.93 -0.41 0.14 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.12 0.91 7.81 -52.49 -0.41 0.50 16 31 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 32 H 0.07 0.68 7.85 -51.92 -0.41 0.27 16 33 H 0.41 4.46 8.61 -34.47 -0.30 4.17 16 34 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 35 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 36 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 37 H 0.07 1.57 4.32 -51.93 -0.22 1.34 16 38 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 41 H 0.05 1.05 5.46 -51.93 -0.28 0.76 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.08 0.66 6.94 -51.92 -0.36 0.30 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -32.90 350.33 -9.15 -42.05 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.44 Total: 5.49 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: -0.25 Total: -29.64 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.59 Total: -45.12 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.79 Total: -38.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -3.87 Total: 17.61 kcal Atomic # 16 Polarization: 43.58 SS G_CDS: -0.48 Total: 43.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.90 -9.15 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451367294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds