Wall clock time and date at job start Tue Mar 31 2020 10:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46837 * 111.00071 * 2 1 4 4 C 1.50142 * 110.27562 * 287.53874 * 3 2 1 5 5 C 1.29824 * 123.28541 * 342.94709 * 4 3 2 6 6 C 1.50694 * 118.55630 * 180.65842 * 5 4 3 7 7 N 1.46498 * 109.47424 * 94.72956 * 6 5 4 8 8 S 1.65598 * 120.00045 * 165.00086 * 7 6 5 9 9 O 1.42102 * 104.27730 * 181.07065 * 8 7 6 10 10 O 1.42096 * 104.27911 * 308.92784 * 8 7 6 11 11 C 1.81399 * 104.44999 * 65.00045 * 8 7 6 12 12 C 1.53001 * 109.47230 * 180.02562 * 11 8 7 13 13 C 1.53008 * 109.46872 * 299.99787 * 12 11 8 14 14 C 1.52995 * 109.47360 * 59.99817 * 12 11 8 15 15 C 1.50703 * 109.47150 * 180.02562 * 12 11 8 16 16 H 1.08000 * 120.00309 * 0.83412 * 15 12 11 17 17 C 1.37879 * 119.99966 * 180.83541 * 15 12 11 18 18 N 1.31511 * 119.99947 * 194.57862 * 17 15 12 19 19 Si 1.86798 * 119.99907 * 14.57442 * 17 15 12 20 20 H 1.48498 * 109.47127 * 84.45667 * 19 17 15 21 21 H 1.48501 * 109.47110 * 204.45301 * 19 17 15 22 22 H 1.48498 * 109.47182 * 324.45676 * 19 17 15 23 23 C 1.50306 * 122.89111 * 0.37440 * 5 4 3 24 24 C 1.47239 * 110.99701 * 237.06787 * 2 1 3 25 25 H 1.08998 * 109.47230 * 182.93107 * 1 2 3 26 26 H 1.08999 * 109.47426 * 302.92960 * 1 2 3 27 27 H 1.09002 * 109.47333 * 62.93140 * 1 2 3 28 28 H 1.09005 * 109.33385 * 47.78518 * 3 2 1 29 29 H 1.09000 * 109.33776 * 167.45263 * 3 2 1 30 30 H 1.08002 * 118.35521 * 162.97132 * 4 3 2 31 31 H 1.08999 * 109.47241 * 214.73118 * 6 5 4 32 32 H 1.09008 * 109.47208 * 334.73010 * 6 5 4 33 33 H 0.96997 * 120.00054 * 344.99973 * 7 6 5 34 34 H 1.08998 * 109.47304 * 300.00151 * 11 8 7 35 35 H 1.09003 * 109.47120 * 59.99973 * 11 8 7 36 36 H 1.09000 * 109.46833 * 70.23449 * 13 12 11 37 37 H 1.08994 * 109.46786 * 190.23160 * 13 12 11 38 38 H 1.09003 * 109.47078 * 310.23433 * 13 12 11 39 39 H 1.09000 * 109.47159 * 59.99939 * 14 12 11 40 40 H 1.08998 * 109.47354 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.46799 * 300.00440 * 14 12 11 42 42 H 0.96997 * 120.00179 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.43097 * 103.57705 * 23 5 4 44 44 H 1.08998 * 109.43300 * 223.48026 * 23 5 4 45 45 H 1.09001 * 109.63916 * 294.88683 * 24 2 1 46 46 H 1.09006 * 109.79973 * 174.38052 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 1.7855 2.0087 -1.3429 5 6 1.5193 1.3328 -2.4189 6 6 1.3434 2.0816 -3.7148 7 7 2.6140 2.1012 -4.4438 8 16 2.6430 2.5193 -6.0459 9 8 4.0108 2.4037 -6.4135 10 8 1.6520 1.6934 -6.6417 11 6 2.1221 4.2567 -6.0698 12 6 2.1079 4.7651 -7.5128 13 6 3.5117 4.6453 -8.1096 14 6 1.1294 3.9279 -8.3389 15 6 1.6757 6.2087 -7.5326 16 1 1.4483 6.7171 -6.6073 17 6 1.5707 6.8805 -8.7321 18 7 1.4779 8.1922 -8.7451 19 14 1.5604 5.9274 -10.3386 20 1 0.1807 5.4612 -10.6288 21 1 2.0271 6.8079 -11.4396 22 1 2.4652 4.7554 -10.2247 23 6 1.3849 -0.1642 -2.4302 24 6 1.9966 -0.7473 -1.1537 25 1 -0.3633 -1.0263 0.0525 26 1 -0.3634 0.5586 0.8625 27 1 -0.3634 0.4676 -0.9151 28 1 1.4794 1.9554 0.7618 29 1 3.0618 1.3480 0.2234 30 1 1.8601 3.0835 -1.4175 31 1 0.5846 1.5862 -4.3206 32 1 1.0296 3.1040 -3.5041 33 1 3.4382 1.8693 -3.9881 34 1 1.1219 4.3421 -5.6451 35 1 2.8190 4.8531 -5.4810 36 1 3.7524 3.5934 -8.2635 37 1 3.5464 5.1694 -9.0646 38 1 4.2362 5.0875 -7.4258 39 1 0.1293 4.0132 -7.9138 40 1 1.1196 4.2898 -9.3670 41 1 1.4424 2.8839 -8.3245 42 1 1.4036 8.6649 -9.5889 43 1 0.3298 -0.4332 -2.4823 44 1 1.9055 -0.5685 -3.2983 45 1 1.7245 -1.7990 -1.0644 46 1 3.0818 -0.6516 -1.1907 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451367294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:53 Heat of formation + Delta-G solvation = -60.185082 kcal Electronic energy + Delta-G solvation = -25646.592561 eV Core-core repulsion = 22084.392539 eV Total energy + Delta-G solvation = -3562.200022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65068 -38.51833 -38.17983 -37.02305 -36.78810 -34.06277 -33.20250 -31.86969 -29.01935 -28.73255 -28.16581 -27.11312 -26.24657 -24.50373 -22.68510 -21.68100 -20.28963 -19.09940 -18.45860 -18.13372 -17.77703 -17.13039 -16.93156 -16.67736 -16.31375 -15.92158 -15.43546 -15.15297 -15.10622 -15.01172 -14.80273 -14.46741 -14.28514 -14.17688 -13.84179 -13.61469 -13.28680 -13.19584 -13.07243 -13.00419 -12.75446 -12.69633 -12.68828 -12.59104 -12.32878 -12.12325 -12.01939 -11.87205 -11.81939 -11.64223 -11.00997 -10.70126 -10.58226 -10.35175 -9.92270 -9.25414 -8.36552 -6.36058 -0.70066 1.02854 1.28987 1.34116 1.41919 1.95374 2.28176 2.76132 2.97943 3.07097 3.26024 3.67201 3.74250 3.75988 4.03929 4.08886 4.19438 4.22602 4.30550 4.37393 4.48772 4.53706 4.57492 4.59295 4.62839 4.67676 4.69567 4.76023 4.84409 4.87131 4.93449 4.95074 4.99117 5.07327 5.12170 5.13700 5.36566 5.48692 5.51263 5.61516 5.85919 6.05963 6.06739 6.16197 6.24618 6.66990 7.28473 8.79322 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.003233 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.172792 B = 8658.572437 C = 8998.919140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.542 5.542 3 C 0.076 3.924 4 C -0.161 4.161 5 C -0.138 4.138 6 C 0.141 3.859 7 N -1.107 6.107 8 S 2.617 3.383 9 O -0.987 6.987 10 O -0.985 6.985 11 C -0.583 4.583 12 C 0.045 3.955 13 C -0.176 4.176 14 C -0.187 4.187 15 C -0.504 4.504 16 H 0.050 0.950 17 C 0.026 3.974 18 N -0.936 5.936 19 Si 0.917 3.083 20 H -0.275 1.275 21 H -0.306 1.306 22 H -0.222 1.222 23 C -0.123 4.123 24 C 0.052 3.948 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.423 0.577 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.266 0.734 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -16.946 17.709 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.263 5.263 3 C -0.052 4.052 4 C -0.182 4.182 5 C -0.140 4.140 6 C 0.015 3.985 7 N -0.868 5.868 8 S 2.713 3.287 9 O -0.977 6.977 10 O -0.974 6.974 11 C -0.715 4.715 12 C 0.042 3.958 13 C -0.233 4.233 14 C -0.243 4.243 15 C -0.543 4.543 16 H 0.068 0.932 17 C -0.173 4.173 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.202 1.202 21 H -0.235 1.235 22 H -0.146 1.146 23 C -0.161 4.161 24 C -0.076 4.076 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.259 0.741 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.058 -17.599 17.267 24.656 hybrid contribution -0.381 1.298 -1.397 1.944 sum -0.438 -16.301 15.870 22.755 Atomic orbital electron populations 1.22489 0.87031 1.02613 1.01119 1.62764 1.08856 1.13568 1.41150 1.21248 1.01935 0.88147 0.93826 1.23112 0.98277 1.01120 0.95732 1.20835 1.03498 0.95825 0.93814 1.20539 0.84834 1.00868 0.92228 1.55395 1.15697 1.85648 1.30034 1.04641 0.73536 0.77610 0.72914 1.93535 1.35141 1.87236 1.81807 1.93513 1.62677 1.65552 1.75690 1.30387 1.13393 1.22121 1.05598 1.18212 0.92972 0.95545 0.89064 1.22699 0.97859 1.00522 1.02230 1.22845 1.01857 0.99327 1.00320 1.20937 1.45680 0.94027 0.93649 0.93167 1.25671 0.94255 0.95082 1.02252 1.70050 1.51224 1.08349 1.27833 0.86712 0.79774 0.79398 0.79477 1.20196 1.23467 1.14616 1.21069 1.02521 0.92076 1.00432 1.22297 1.00010 0.98440 0.86822 0.90929 0.90847 0.95086 0.88535 0.88621 0.86122 0.90270 0.89791 0.74150 0.84144 0.84212 0.93098 0.92508 0.91706 0.91037 0.93839 0.91710 0.92464 0.90141 0.90632 0.89358 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.91 127.69 1.14 1.33 16 2 N -0.54 -7.48 5.29 -927.19 -4.90 -12.38 16 3 C 0.08 0.94 5.94 85.39 0.51 1.45 16 4 C -0.16 -2.30 9.06 26.68 0.24 -2.05 16 5 C -0.14 -2.26 4.65 -15.40 -0.07 -2.34 16 6 C 0.14 2.74 6.18 85.63 0.53 3.27 16 7 N -1.11 -24.82 5.88 -190.79 -1.12 -25.94 16 8 S 2.62 82.42 4.50 -56.49 -0.25 82.16 16 9 O -0.99 -36.05 15.93 -127.65 -2.03 -38.08 16 10 O -0.98 -35.43 15.12 -127.65 -1.93 -37.36 16 11 C -0.58 -19.90 4.99 71.98 0.36 -19.55 16 12 C 0.04 1.96 0.52 -52.93 -0.03 1.93 16 13 C -0.18 -7.63 6.95 71.98 0.50 -7.13 16 14 C -0.19 -7.97 7.22 71.98 0.52 -7.45 16 15 C -0.50 -27.01 8.62 25.60 0.22 -26.79 16 16 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 17 C 0.03 1.47 5.31 84.66 0.45 1.92 16 18 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 19 Si 0.92 43.85 22.79 68.60 1.56 45.41 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.22 -9.68 4.67 99.48 0.46 -9.21 16 23 C -0.12 -1.89 5.24 29.75 0.16 -1.73 16 24 C 0.05 0.71 6.06 86.27 0.52 1.23 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.80 8.05 -2.39 -0.02 0.78 16 27 H 0.03 0.42 5.68 -2.39 -0.01 0.41 16 28 H 0.10 1.00 7.98 -2.38 -0.02 0.98 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.58 7.81 -2.91 -0.02 1.56 16 31 H 0.08 1.66 7.68 -2.39 -0.02 1.64 16 32 H 0.08 1.41 7.85 -2.38 -0.02 1.39 16 33 H 0.42 8.10 8.61 -96.75 -0.83 7.27 16 34 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 35 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 36 H 0.05 2.05 6.21 -2.39 -0.01 2.03 16 37 H 0.06 2.55 4.32 -2.39 -0.01 2.54 16 38 H 0.06 2.67 8.11 -2.39 -0.02 2.65 16 39 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.04 1.91 2.28 -2.39 -0.01 1.91 16 41 H 0.06 2.56 5.46 -2.39 -0.01 2.55 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.08 1.21 6.94 -2.38 -0.02 1.19 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 Total: -1.00 -69.61 350.33 -3.43 -73.04 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.09 Total: 25.48 kcal Atomic # 6 Polarization: -60.94 SS G_CDS: 5.04 Total: -55.90 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -5.72 Total: -94.75 kcal Atomic # 8 Polarization: -71.48 SS G_CDS: -3.96 Total: -75.44 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.56 Total: 45.41 kcal Atomic # 16 Polarization: 82.42 SS G_CDS: -0.25 Total: 82.16 kcal Total: -69.61 -3.43 -73.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451367294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.859 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds