Wall clock time and date at job start Tue Mar 31 2020 10:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46868 * 2 1 4 4 H 1.08996 * 110.91399 * 308.90072 * 3 2 1 5 5 C 1.55154 * 111.00246 * 184.99741 * 3 2 1 6 6 C 1.54324 * 102.94150 * 206.42396 * 5 3 2 7 7 N 1.47018 * 107.27166 * 22.19318 * 6 5 3 8 8 C 1.34776 * 125.64658 * 181.01699 * 7 6 5 9 9 O 1.21364 * 119.99457 * 180.02562 * 8 7 6 10 10 C 1.49352 * 120.00285 * 359.75640 * 8 7 6 11 11 O 1.21376 * 119.99626 * 0.27059 * 10 8 7 12 12 N 1.34772 * 120.00183 * 180.27017 * 10 8 7 13 13 C 1.39747 * 119.99932 * 174.89137 * 12 10 8 14 14 C 1.39338 * 119.95249 * 325.53011 * 13 12 10 15 15 C 1.38483 * 120.42140 * 179.71978 * 14 13 12 16 16 C 1.37688 * 120.32466 * 0.55450 * 15 14 13 17 17 C 1.40748 * 119.90158 * 359.72306 * 16 15 14 18 18 C 1.41404 * 120.21360 * 180.02562 * 17 16 15 19 19 H 1.08010 * 119.99625 * 25.14076 * 18 17 16 20 20 C 1.39934 * 120.00649 * 205.14217 * 18 17 16 21 21 N 1.30831 * 119.99502 * 16.78718 * 20 18 17 22 22 Si 1.86798 * 120.00325 * 196.78820 * 20 18 17 23 23 H 1.48497 * 109.46959 * 59.99498 * 22 20 18 24 24 H 1.48491 * 109.47013 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46720 * 299.99785 * 22 20 18 26 26 C 1.38301 * 119.95103 * 145.80271 * 13 12 10 27 27 C 1.47425 * 108.70223 * 1.29066 * 7 6 5 28 28 H 1.08999 * 109.46961 * 60.00200 * 1 2 3 29 29 H 1.09005 * 109.46470 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46881 * 299.99530 * 1 2 3 31 31 H 1.09000 * 109.46698 * 239.99995 * 2 1 3 32 32 H 1.08999 * 109.46961 * 119.99800 * 2 1 3 33 33 H 1.09000 * 110.71813 * 88.05921 * 5 3 2 34 34 H 1.08997 * 110.72352 * 324.79323 * 5 3 2 35 35 H 1.08998 * 109.87968 * 262.77619 * 6 5 3 36 36 H 1.09000 * 110.00541 * 141.68778 * 6 5 3 37 37 H 0.97000 * 120.00320 * 354.89311 * 12 10 8 38 38 H 1.07998 * 119.79250 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.83434 * 180.25948 * 15 14 13 40 40 H 1.07995 * 120.05207 * 179.69999 * 16 15 14 41 41 H 0.97004 * 119.99562 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.16536 * 359.97438 * 26 13 12 43 43 H 1.08994 * 110.37002 * 94.47680 * 27 7 6 44 44 H 1.08999 * 110.36477 * 216.80405 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0225 -0.7924 5 6 3.5858 1.4859 -0.1262 6 6 3.9508 2.8220 0.5545 7 7 2.8409 3.1716 1.4530 8 6 2.7675 4.2799 2.2163 9 8 1.7992 4.4664 2.9239 10 6 3.8805 5.2757 2.1961 11 8 4.8488 5.0892 1.4884 12 7 3.8096 6.3813 2.9635 13 6 4.8953 7.2589 3.0266 14 6 6.1956 6.7628 2.9585 15 6 7.2785 7.6242 3.0142 16 6 7.0820 8.9803 3.1492 17 6 5.7744 9.4956 3.2251 18 6 5.5649 10.8872 3.3632 19 1 6.3142 11.5832 3.0157 20 6 4.3869 11.3627 3.9500 21 7 3.6379 10.5574 4.6587 22 14 3.8837 13.1470 3.7214 23 1 3.7031 13.4289 2.2747 24 1 2.6069 13.3968 4.4372 25 1 4.9411 14.0336 4.2703 26 6 4.6777 8.6179 3.1622 27 6 1.8245 2.1058 1.3857 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8872 1.4918 -1.1737 34 1 4.0396 0.6473 0.4020 35 1 4.0769 3.5995 -0.1989 36 1 4.8708 2.7091 1.1281 37 1 3.0050 6.5680 3.4721 38 1 6.3600 5.7002 2.8574 39 1 8.2823 7.2298 2.9564 40 1 7.9298 9.6475 3.1971 41 1 2.8211 10.8869 5.0652 42 1 3.6704 9.0032 3.2192 43 1 1.9814 1.3809 2.1843 44 1 0.8233 2.5319 1.4502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453671750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:53 Heat of formation + Delta-G solvation = -69.965425 kcal Electronic energy + Delta-G solvation = -25745.376484 eV Core-core repulsion = 22047.308403 eV Total energy + Delta-G solvation = -3698.068081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11018 -40.53703 -39.08471 -38.81312 -36.24319 -35.25419 -34.86037 -31.63489 -31.51642 -30.53524 -29.44136 -27.25356 -26.71986 -24.50728 -23.16975 -23.15871 -22.10798 -21.18240 -20.92077 -19.33983 -19.03723 -18.04570 -17.71542 -17.30626 -16.69191 -16.63022 -16.49412 -15.95363 -15.58580 -15.06954 -14.79925 -14.66611 -14.45344 -14.36540 -14.21434 -14.04476 -13.62243 -13.54332 -13.48188 -13.17142 -12.85327 -12.81594 -12.76507 -12.58098 -12.27690 -12.06484 -11.83381 -11.63050 -11.58694 -11.55861 -11.44874 -11.22940 -10.96792 -10.58120 -9.95153 -9.37193 -8.94815 -8.59323 -6.37873 0.07861 0.92655 1.03599 1.18408 1.39386 1.50209 1.54342 2.03980 2.20984 2.40317 2.73126 3.17222 3.51575 3.58505 3.68356 3.82290 4.23865 4.31314 4.36449 4.42531 4.48524 4.54986 4.65134 4.67645 4.78870 4.81947 4.90837 4.95667 4.99979 5.01426 5.09486 5.10415 5.13184 5.22384 5.24232 5.30276 5.38887 5.52020 5.65158 5.72461 5.94296 5.98672 6.05398 6.16762 6.36737 6.57130 6.61908 6.85254 6.91642 6.98593 8.32053 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.002717 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.113472 B =10303.566963 C =11144.061464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.087 0.913 5 C -0.118 4.118 6 C 0.099 3.901 7 N -0.587 5.587 8 C 0.524 3.476 9 O -0.547 6.547 10 C 0.500 3.500 11 O -0.515 6.515 12 N -0.634 5.634 13 C 0.143 3.857 14 C -0.235 4.235 15 C -0.080 4.080 16 C -0.241 4.241 17 C 0.092 3.908 18 C -0.495 4.495 19 H 0.081 0.919 20 C 0.035 3.965 21 N -0.823 5.823 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.200 4.200 27 C 0.102 3.898 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.418 0.582 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.289 0.711 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -18.780 -8.658 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.156 4.156 6 C -0.023 4.023 7 N -0.320 5.320 8 C 0.306 3.694 9 O -0.425 6.425 10 C 0.282 3.718 11 O -0.390 6.390 12 N -0.279 5.279 13 C 0.051 3.949 14 C -0.256 4.256 15 C -0.099 4.099 16 C -0.261 4.261 17 C 0.089 3.911 18 C -0.524 4.524 19 H 0.099 0.901 20 C -0.180 4.180 21 N -0.449 5.449 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.182 1.182 26 C -0.221 4.221 27 C -0.019 4.019 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.425 -18.818 -8.587 21.384 hybrid contribution -0.622 1.221 0.573 1.485 sum -6.047 -17.597 -8.014 20.260 Atomic orbital electron populations 1.21836 0.95713 1.02216 1.01764 1.21444 0.95918 0.93369 1.03570 1.22492 0.96037 0.97847 0.94836 0.89432 1.22812 0.95158 0.95085 1.02561 1.22375 0.88697 0.98556 0.92647 1.48387 1.23271 1.19219 1.41090 1.19550 0.86434 0.82386 0.81027 1.90745 1.33656 1.76759 1.41361 1.20290 0.87746 0.82993 0.80737 1.90725 1.33467 1.75726 1.39110 1.43170 1.17987 1.21517 1.45225 1.17685 0.86607 0.88828 1.01816 1.20469 0.90886 0.98797 1.15435 1.20757 0.97876 0.93014 0.98221 1.21262 0.96136 0.95061 1.13626 1.17764 0.91182 0.93880 0.88298 1.19791 1.03933 0.92271 1.36448 0.90129 1.26760 0.94972 1.04608 0.91642 1.69854 1.12777 1.39509 1.22750 0.85246 0.78378 0.76539 0.79538 1.18666 1.19315 1.18187 1.21044 0.99765 0.90217 1.11121 1.22778 0.91413 0.88160 0.99568 0.92635 0.91775 0.93321 0.89735 0.90959 0.87752 0.88751 0.91383 0.91087 0.74486 0.87327 0.85529 0.87572 0.90080 0.87168 0.89741 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.82 71.98 0.71 -0.78 16 2 C -0.11 -0.90 5.44 30.60 0.17 -0.73 16 3 C -0.09 -1.17 3.02 -9.32 -0.03 -1.20 16 4 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 5 C -0.12 -1.47 6.42 31.78 0.20 -1.27 16 6 C 0.10 2.16 5.49 86.73 0.48 2.64 16 7 N -0.59 -15.34 3.32 -813.06 -2.70 -18.04 16 8 C 0.52 17.74 7.91 87.24 0.69 18.43 16 9 O -0.55 -20.49 16.74 -3.29 -0.06 -20.54 16 10 C 0.50 19.35 7.58 87.24 0.66 20.01 16 11 O -0.51 -20.84 11.86 -3.33 -0.04 -20.88 16 12 N -0.63 -26.72 5.32 -304.99 -1.62 -28.34 16 13 C 0.14 6.95 6.24 38.16 0.24 7.18 16 14 C -0.23 -11.02 8.66 22.59 0.20 -10.83 16 15 C -0.08 -3.64 10.02 22.20 0.22 -3.41 16 16 C -0.24 -11.94 9.79 22.75 0.22 -11.72 16 17 C 0.09 5.00 5.57 -21.31 -0.12 4.88 16 18 C -0.50 -26.59 9.05 23.46 0.21 -26.37 16 19 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 20 C 0.04 1.77 5.16 85.25 0.44 2.21 16 21 N -0.82 -42.76 10.94 21.82 0.24 -42.52 16 22 Si 0.98 38.12 29.59 68.60 2.03 40.15 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.20 -10.66 8.60 22.86 0.20 -10.46 16 27 C 0.10 1.94 5.86 86.93 0.51 2.45 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.05 0.54 7.75 -2.39 -0.02 0.52 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.57 7.96 -2.39 -0.02 0.55 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.93 8.04 -2.39 -0.02 0.91 16 35 H 0.07 1.67 7.59 -2.39 -0.02 1.65 16 36 H 0.07 1.69 7.68 -2.39 -0.02 1.67 16 37 H 0.42 16.73 8.30 -92.71 -0.77 15.96 16 38 H 0.11 4.88 6.48 -2.91 -0.02 4.86 16 39 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.85 16 42 H 0.11 6.08 6.17 -2.91 -0.02 6.06 16 43 H 0.08 1.45 7.91 -2.39 -0.02 1.44 16 44 H 0.07 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -64.39 362.64 3.09 -61.30 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.25 Total: 37.85 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.00 Total: -8.97 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -4.09 Total: -88.90 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.09 Total: -41.42 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -64.39 3.09 -61.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453671750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.669 kcal (2) G-P(sol) polarization free energy of solvation -64.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds