Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 H 1.08996 * 109.47463 * 54.99928 * 3 2 1 5 5 C 1.50699 * 109.47410 * 174.99942 * 3 2 1 6 6 H 1.07994 * 120.00293 * 119.99592 * 5 3 2 7 7 C 1.37881 * 119.99931 * 300.00227 * 5 3 2 8 8 N 1.31511 * 120.00254 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99942 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47124 * 90.00170 * 9 7 5 11 11 H 1.48503 * 109.47350 * 210.00337 * 9 7 5 12 12 H 1.48508 * 109.47079 * 330.00009 * 9 7 5 13 13 N 1.46506 * 109.47287 * 294.99964 * 3 2 1 14 14 C 1.34768 * 120.00057 * 84.99841 * 13 3 2 15 15 O 1.21578 * 120.00122 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00200 * 180.02562 * 14 13 3 17 17 C 1.39295 * 120.00069 * 185.32721 * 16 14 13 18 18 C 1.39244 * 119.83615 * 213.66626 * 17 16 14 19 19 C 1.36606 * 119.88613 * 180.08981 * 18 17 16 20 20 C 1.40026 * 119.87231 * 0.02562 * 19 18 17 21 21 C 1.39812 * 120.26307 * 359.85140 * 20 19 18 22 22 C 1.37020 * 119.33927 * 0.20916 * 21 20 19 23 23 C 1.50434 * 121.59571 * 180.26737 * 21 20 19 24 24 C 1.52633 * 111.23594 * 337.36739 * 23 21 20 25 25 C 1.53434 * 109.35755 * 54.55379 * 24 23 21 26 26 C 1.47272 * 119.64142 * 179.52971 * 20 19 18 27 27 O 1.21296 * 121.15616 * 348.82288 * 26 20 19 28 28 H 1.08997 * 109.47195 * 300.00231 * 1 2 3 29 29 H 1.09000 * 109.46939 * 60.00169 * 1 2 3 30 30 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47651 * 239.99864 * 2 1 3 32 32 H 1.09001 * 109.47460 * 119.99855 * 2 1 3 33 33 H 0.97002 * 120.00176 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99773 * 264.99738 * 13 3 2 35 35 H 0.96994 * 119.99780 * 5.31974 * 16 14 13 36 36 H 1.07997 * 120.05649 * 0.10389 * 18 17 16 37 37 H 1.07992 * 120.06480 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.84566 * 179.89223 * 22 21 20 39 39 H 1.08998 * 109.13138 * 97.82112 * 23 21 20 40 40 H 1.09000 * 109.12632 * 216.91808 * 23 21 20 41 41 H 1.09001 * 109.48646 * 174.51266 * 24 23 21 42 42 H 1.08996 * 109.49424 * 294.58260 * 24 23 21 43 43 H 1.08996 * 109.87301 * 176.52173 * 25 24 23 44 44 H 1.08997 * 109.87305 * 55.46402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8796 1.3359 9 14 3.0963 0.1101 2.5707 10 1 2.8745 -1.3260 2.2646 11 1 3.7940 0.2360 3.8756 12 1 1.7880 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3412 2.6326 -0.4319 16 7 0.0784 3.2666 -2.5188 17 6 -1.1335 3.9481 -2.6021 18 6 -1.8412 3.9591 -3.8012 19 6 -3.0290 4.6287 -3.8846 20 6 -3.5301 5.3021 -2.7638 21 6 -2.8211 5.2893 -1.5588 22 6 -1.6303 4.6153 -1.4876 23 6 -3.3344 5.9974 -0.3348 24 6 -4.3148 7.1062 -0.7079 25 6 -5.4370 6.5220 -1.5758 26 6 -4.8059 6.0311 -2.8622 27 8 -5.3331 6.2312 -3.9361 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8770 0.4818 2.1129 34 1 2.2720 2.1232 -1.9978 35 1 0.6656 3.2254 -3.2897 36 1 -1.4519 3.4389 -4.6639 37 1 -3.5804 4.6388 -4.8130 38 1 -1.0750 4.6015 -0.5614 39 1 -3.8383 5.2771 0.3096 40 1 -2.4932 6.4315 0.2058 41 1 -4.7418 7.5343 0.1990 42 1 -3.7908 7.8827 -1.2651 43 1 -6.1749 7.2934 -1.7960 44 1 -5.9128 5.6905 -1.0559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455720052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -45.767428 kcal Electronic energy + Delta-G solvation = -26221.014441 eV Core-core repulsion = 22523.995664 eV Total energy + Delta-G solvation = -3697.018777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90017 -39.91173 -38.21647 -36.31672 -35.39919 -34.13134 -32.49348 -31.62159 -31.35698 -29.39564 -28.12423 -27.39273 -23.88488 -23.28249 -22.63191 -21.63390 -21.15588 -19.94562 -19.32282 -18.51487 -17.34174 -16.71760 -16.45668 -16.11527 -15.58715 -15.21803 -14.97606 -14.65059 -14.44400 -14.21293 -13.96855 -13.61278 -13.47016 -13.28650 -13.24266 -12.97849 -12.69276 -12.26288 -12.24304 -12.01565 -11.85154 -11.42703 -11.27999 -11.16834 -11.10095 -10.95400 -10.69427 -10.26233 -9.97306 -9.82229 -9.67325 -9.47676 -9.29870 -8.88809 -8.83461 -8.31164 -7.99238 -6.27687 -4.30973 0.58124 1.34622 2.26335 2.90767 3.18756 3.31144 3.35240 3.42176 3.80748 3.93297 4.25315 4.37556 4.49840 4.66450 4.68861 4.81977 4.93779 5.05933 5.08448 5.17772 5.28823 5.39521 5.44998 5.54155 5.63791 5.77799 5.86121 5.91145 5.92637 5.97532 6.11007 6.19077 6.23142 6.31267 6.48531 6.56527 6.64276 6.74417 6.86268 6.97634 7.02796 7.19964 7.36953 7.40400 7.42943 8.17096 8.48140 8.70112 8.93394 9.32503 10.84242 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.002979 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.313718 B = 9397.770164 C = 9814.046570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.260 3.740 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.693 3.307 15 O -0.573 6.573 16 N -0.693 5.693 17 C 0.224 3.776 18 C -0.176 4.176 19 C -0.035 4.035 20 C -0.207 4.207 21 C -0.006 4.006 22 C -0.142 4.142 23 C -0.090 4.090 24 C -0.112 4.112 25 C -0.165 4.165 26 C 0.405 3.595 27 O -0.467 6.467 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.407 0.593 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 8.831 -7.070 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.359 5.359 14 C 0.394 3.606 15 O -0.450 6.450 16 N -0.340 5.340 17 C 0.126 3.874 18 C -0.197 4.197 19 C -0.054 4.054 20 C -0.209 4.209 21 C -0.007 4.007 22 C -0.162 4.162 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.203 4.203 26 C 0.284 3.716 27 O -0.344 6.344 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.242 0.758 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.142 8.783 -6.567 20.350 hybrid contribution 0.416 -0.762 -0.002 0.868 sum -16.726 8.021 -6.569 19.679 Atomic orbital electron populations 1.21852 0.96827 0.98993 1.02270 1.22320 0.94448 0.99987 1.01168 1.19097 0.95512 0.88224 0.81569 0.93128 1.21017 0.88482 1.40071 1.07968 0.90174 1.24818 0.94875 0.95073 0.97657 1.69858 1.08706 1.44313 1.29843 0.86906 0.80950 0.79998 0.80909 1.20197 1.22100 1.18391 1.45489 1.13115 1.58459 1.18870 1.16075 0.83506 0.78725 0.82309 1.90913 1.51679 1.64329 1.38116 1.42838 1.20244 1.55609 1.15283 1.17747 0.85465 0.89793 0.94395 1.20608 0.96216 1.05055 0.97857 1.20828 0.94058 0.93071 0.97456 1.20116 0.98975 1.06936 0.94894 1.19637 0.93190 0.94385 0.93473 1.20960 0.97560 0.97945 0.99758 1.20526 0.99739 0.97429 0.94936 1.21494 0.95540 0.97955 0.99970 1.22313 0.99268 1.02805 0.95898 1.22599 0.84068 0.74977 0.89954 1.90515 1.62764 1.49049 1.32036 0.92820 0.93022 0.95043 0.92306 0.92668 0.92183 0.77342 0.75774 0.85222 0.84954 0.83653 0.89415 0.89639 0.90177 0.91194 0.89056 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.51 37.16 0.32 -2.46 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.13 16 3 C 0.26 5.81 1.83 -69.08 -0.13 5.68 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 5 C -0.54 -13.89 9.31 -34.44 -0.32 -14.21 16 6 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 9 Si 0.88 21.04 24.41 -169.99 -4.15 16.89 16 10 H -0.28 -6.38 6.83 56.52 0.39 -6.00 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -6.09 6.53 56.52 0.37 -5.73 16 13 N -0.71 -12.90 5.03 -59.81 -0.30 -13.21 16 14 C 0.69 12.00 6.85 -86.92 -0.60 11.41 16 15 O -0.57 -11.56 11.16 5.30 0.06 -11.50 16 16 N -0.69 -9.15 5.32 -14.25 -0.08 -9.23 16 17 C 0.22 2.97 6.27 -83.79 -0.52 2.44 16 18 C -0.18 -1.99 9.91 -39.80 -0.39 -2.38 16 19 C -0.04 -0.41 9.55 -39.50 -0.38 -0.79 16 20 C -0.21 -2.49 5.82 -104.97 -0.61 -3.10 16 21 C -0.01 -0.07 5.75 -104.60 -0.60 -0.67 16 22 C -0.14 -1.96 8.19 -39.72 -0.33 -2.28 16 23 C -0.09 -0.81 5.69 -28.20 -0.16 -0.97 16 24 C -0.11 -0.81 5.90 -26.69 -0.16 -0.97 16 25 C -0.17 -1.34 6.18 -27.28 -0.17 -1.51 16 26 C 0.40 4.67 6.88 -30.26 -0.21 4.46 16 27 O -0.47 -6.64 17.25 5.54 0.10 -6.54 16 28 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 29 H 0.05 1.00 5.65 -51.93 -0.29 0.70 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.24 3.22 -51.93 -0.17 1.08 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.39 6.22 8.56 -40.82 -0.35 5.87 16 35 H 0.41 4.03 8.83 -40.82 -0.36 3.67 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.41 7.71 -52.49 -0.40 1.00 16 38 H 0.15 2.27 6.40 -52.49 -0.34 1.94 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -31.63 349.05 -8.89 -40.52 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.07 Total: 9.12 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.49 Total: -6.40 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.40 Total: -47.35 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.15 Total: -18.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.15 Total: 16.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.63 -8.89 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455720052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.248 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds