Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 H 1.08996 * 109.47463 * 54.99928 * 3 2 1 5 5 C 1.50699 * 109.47410 * 174.99942 * 3 2 1 6 6 H 1.07994 * 120.00293 * 119.99592 * 5 3 2 7 7 C 1.37881 * 119.99931 * 300.00227 * 5 3 2 8 8 N 1.31511 * 120.00254 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99942 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47124 * 90.00170 * 9 7 5 11 11 H 1.48503 * 109.47350 * 210.00337 * 9 7 5 12 12 H 1.48508 * 109.47079 * 330.00009 * 9 7 5 13 13 N 1.46506 * 109.47287 * 294.99964 * 3 2 1 14 14 C 1.34768 * 120.00057 * 84.99841 * 13 3 2 15 15 O 1.21578 * 120.00122 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00200 * 180.02562 * 14 13 3 17 17 C 1.39295 * 120.00069 * 185.32721 * 16 14 13 18 18 C 1.39244 * 119.83615 * 213.66626 * 17 16 14 19 19 C 1.36606 * 119.88613 * 180.08981 * 18 17 16 20 20 C 1.40026 * 119.87231 * 0.02562 * 19 18 17 21 21 C 1.39812 * 120.26307 * 359.85140 * 20 19 18 22 22 C 1.37020 * 119.33927 * 0.20916 * 21 20 19 23 23 C 1.50434 * 121.59571 * 180.26737 * 21 20 19 24 24 C 1.52633 * 111.23594 * 337.36739 * 23 21 20 25 25 C 1.53434 * 109.35755 * 54.55379 * 24 23 21 26 26 C 1.47272 * 119.64142 * 179.52971 * 20 19 18 27 27 O 1.21296 * 121.15616 * 348.82288 * 26 20 19 28 28 H 1.08997 * 109.47195 * 300.00231 * 1 2 3 29 29 H 1.09000 * 109.46939 * 60.00169 * 1 2 3 30 30 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47651 * 239.99864 * 2 1 3 32 32 H 1.09001 * 109.47460 * 119.99855 * 2 1 3 33 33 H 0.97002 * 120.00176 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99773 * 264.99738 * 13 3 2 35 35 H 0.96994 * 119.99780 * 5.31974 * 16 14 13 36 36 H 1.07997 * 120.05649 * 0.10389 * 18 17 16 37 37 H 1.07992 * 120.06480 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.84566 * 179.89223 * 22 21 20 39 39 H 1.08998 * 109.13138 * 97.82112 * 23 21 20 40 40 H 1.09000 * 109.12632 * 216.91808 * 23 21 20 41 41 H 1.09001 * 109.48646 * 174.51266 * 24 23 21 42 42 H 1.08996 * 109.49424 * 294.58260 * 24 23 21 43 43 H 1.08996 * 109.87301 * 176.52173 * 25 24 23 44 44 H 1.08997 * 109.87305 * 55.46402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8796 1.3359 9 14 3.0963 0.1101 2.5707 10 1 2.8745 -1.3260 2.2646 11 1 3.7940 0.2360 3.8756 12 1 1.7880 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3412 2.6326 -0.4319 16 7 0.0784 3.2666 -2.5188 17 6 -1.1335 3.9481 -2.6021 18 6 -1.8412 3.9591 -3.8012 19 6 -3.0290 4.6287 -3.8846 20 6 -3.5301 5.3021 -2.7638 21 6 -2.8211 5.2893 -1.5588 22 6 -1.6303 4.6153 -1.4876 23 6 -3.3344 5.9974 -0.3348 24 6 -4.3148 7.1062 -0.7079 25 6 -5.4370 6.5220 -1.5758 26 6 -4.8059 6.0311 -2.8622 27 8 -5.3331 6.2312 -3.9361 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8770 0.4818 2.1129 34 1 2.2720 2.1232 -1.9978 35 1 0.6656 3.2254 -3.2897 36 1 -1.4519 3.4389 -4.6639 37 1 -3.5804 4.6388 -4.8130 38 1 -1.0750 4.6015 -0.5614 39 1 -3.8383 5.2771 0.3096 40 1 -2.4932 6.4315 0.2058 41 1 -4.7418 7.5343 0.1990 42 1 -3.7908 7.8827 -1.2651 43 1 -6.1749 7.2934 -1.7960 44 1 -5.9128 5.6905 -1.0559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455720052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -66.372738 kcal Electronic energy + Delta-G solvation = -26221.907954 eV Core-core repulsion = 22523.995664 eV Total energy + Delta-G solvation = -3697.912290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98502 -41.05239 -39.30748 -37.55721 -36.64555 -35.27266 -34.40428 -33.15836 -32.28363 -30.47547 -29.32993 -28.75643 -25.11629 -24.41460 -23.97848 -22.55066 -22.52195 -21.51211 -20.20660 -19.97978 -18.51760 -18.16109 -17.69677 -17.32775 -16.97330 -16.42592 -16.05548 -15.97132 -15.50639 -15.28894 -15.09617 -15.07338 -14.80250 -14.40406 -14.25229 -14.07297 -13.90814 -13.80466 -13.66566 -13.18604 -13.03486 -12.95413 -12.76180 -12.42083 -12.17362 -11.99514 -11.86866 -11.82601 -11.49583 -11.24839 -11.23745 -11.06384 -10.85664 -10.56306 -9.85624 -9.82249 -9.10518 -8.37646 -6.43432 -0.38071 0.40529 1.28823 1.31041 1.37162 1.46402 1.67237 2.14218 2.26764 2.79412 2.98682 3.12589 3.29016 3.63308 3.78975 3.93078 4.05651 4.17570 4.21720 4.24703 4.32877 4.35695 4.45585 4.53485 4.56218 4.74934 4.80547 4.84811 4.91982 5.01377 5.05514 5.10012 5.11924 5.18621 5.22741 5.27851 5.31819 5.39993 5.41061 5.48680 5.55139 5.63673 5.94430 5.96124 6.26843 6.52156 6.59641 7.09005 7.22559 7.57323 8.77466 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.002979 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.313718 B = 9397.770164 C = 9814.046570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 C 0.269 3.731 4 H 0.027 0.973 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.257 1.257 13 N -0.709 5.709 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.676 5.676 17 C 0.205 3.795 18 C -0.165 4.165 19 C -0.042 4.042 20 C -0.217 4.217 21 C -0.003 4.003 22 C -0.161 4.161 23 C -0.092 4.092 24 C -0.105 4.105 25 C -0.160 4.160 26 C 0.404 3.596 27 O -0.499 6.499 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.270 0.730 34 H 0.405 0.595 35 H 0.423 0.577 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 8.889 -7.477 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.177 4.177 3 C 0.164 3.836 4 H 0.045 0.955 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.181 1.181 13 N -0.361 5.361 14 C 0.397 3.603 15 O -0.481 6.481 16 N -0.324 5.324 17 C 0.108 3.892 18 C -0.186 4.186 19 C -0.061 4.061 20 C -0.219 4.219 21 C -0.004 4.004 22 C -0.181 4.181 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.197 4.197 26 C 0.285 3.715 27 O -0.378 6.378 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.262 0.738 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.355 8.862 -7.026 22.417 hybrid contribution 1.080 -0.683 0.032 1.278 sum -18.275 8.179 -6.994 21.208 Atomic orbital electron populations 1.21720 0.95210 1.00301 1.01556 1.22238 0.95789 0.98635 1.01064 1.18679 0.92978 0.89282 0.82636 0.95541 1.21266 0.90301 1.38582 1.06968 0.92488 1.25525 0.95691 0.95867 0.99852 1.69970 1.10329 1.46128 1.30866 0.86054 0.79433 0.79945 0.78312 1.18686 1.22222 1.18126 1.45159 1.14031 1.58861 1.18039 1.16060 0.82744 0.78508 0.82965 1.90898 1.52359 1.65272 1.39525 1.42508 1.20643 1.54764 1.14529 1.17936 0.85661 0.90441 0.95156 1.20801 0.95611 1.04383 0.97806 1.21074 0.94253 0.92886 0.97863 1.20385 0.99469 1.06975 0.95056 1.19872 0.92320 0.93751 0.94467 1.20928 0.98506 0.99456 0.99257 1.20628 1.00385 0.98040 0.93823 1.21492 0.94767 0.97049 1.00916 1.22358 0.99607 1.03689 0.94080 1.23062 0.83610 0.74026 0.90780 1.90506 1.63455 1.50342 1.33448 0.94292 0.92981 0.92636 0.91343 0.93760 0.92073 0.75977 0.73801 0.82548 0.83990 0.85900 0.88661 0.89428 0.87448 0.91470 0.87724 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 8.51 71.98 0.61 -4.24 16 2 C -0.14 -5.71 5.11 30.59 0.16 -5.55 16 3 C 0.27 12.02 1.83 44.24 0.08 12.10 16 4 H 0.03 1.33 6.63 -2.39 -0.02 1.31 16 5 C -0.53 -27.89 9.31 25.60 0.24 -27.65 16 6 H 0.06 3.18 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.67 5.45 84.66 0.46 2.13 16 8 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 9 Si 0.94 43.41 24.41 68.60 1.67 45.09 16 10 H -0.26 -11.45 6.83 99.48 0.68 -10.77 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.26 -11.72 6.53 99.48 0.65 -11.07 16 13 N -0.71 -25.49 5.03 -461.43 -2.32 -27.81 16 14 C 0.70 23.70 6.85 179.06 1.23 24.93 16 15 O -0.60 -24.18 11.16 -3.96 -0.04 -24.22 16 16 N -0.68 -17.08 5.32 -317.25 -1.69 -18.77 16 17 C 0.21 5.22 6.27 38.40 0.24 5.46 16 18 C -0.17 -3.42 9.91 22.13 0.22 -3.20 16 19 C -0.04 -0.91 9.55 22.32 0.21 -0.70 16 20 C -0.22 -4.93 5.82 -20.09 -0.12 -5.04 16 21 C 0.00 -0.07 5.75 -19.85 -0.11 -0.18 16 22 C -0.16 -4.40 8.19 22.18 0.18 -4.22 16 23 C -0.09 -1.51 5.69 29.64 0.17 -1.34 16 24 C -0.10 -1.25 5.90 30.62 0.18 -1.07 16 25 C -0.16 -2.18 6.18 30.24 0.19 -1.99 16 26 C 0.40 8.69 6.88 28.31 0.19 8.88 16 27 O -0.50 -13.64 17.25 -3.08 -0.05 -13.69 16 28 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 29 H 0.05 1.92 5.65 -2.39 -0.01 1.90 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.04 1.92 3.22 -2.39 -0.01 1.92 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.41 12.55 8.56 -92.71 -0.79 11.76 16 35 H 0.42 7.65 8.83 -92.71 -0.82 6.83 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.14 2.80 7.71 -2.91 -0.02 2.77 16 38 H 0.12 3.93 6.40 -2.91 -0.02 3.92 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.99 349.05 1.36 -67.64 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.65 Total: 28.01 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 4.13 Total: -1.69 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -3.71 Total: -101.14 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.10 Total: -37.91 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.67 Total: 45.09 kcal Total: -68.99 1.36 -67.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455720052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds