Wall clock time and date at job start Tue Mar 31 2020 10:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 H 1.08992 * 109.30139 * 305.41239 * 3 2 1 5 5 C 1.52914 * 109.13967 * 185.94828 * 3 2 1 6 6 C 1.53349 * 108.68531 * 189.06305 * 5 3 2 7 7 H 1.08995 * 109.69976 * 187.26997 * 6 5 3 8 8 C 1.50701 * 109.67193 * 307.78553 * 6 5 3 9 9 O 1.21284 * 119.99752 * 95.28114 * 8 6 5 10 10 N 1.34781 * 119.99819 * 275.27571 * 8 6 5 11 11 C 1.39938 * 119.99665 * 174.85938 * 10 8 6 12 12 C 1.39288 * 119.94459 * 146.21728 * 11 10 8 13 13 C 1.38487 * 120.42875 * 179.97438 * 12 11 10 14 14 C 1.37680 * 120.31963 * 359.76559 * 13 12 11 15 15 C 1.40740 * 119.88827 * 0.52996 * 14 13 12 16 16 C 1.41400 * 120.21227 * 179.72072 * 15 14 13 17 17 H 1.08000 * 119.99915 * 151.91843 * 16 15 14 18 18 C 1.39933 * 120.00069 * 331.91452 * 16 15 14 19 19 N 1.30826 * 119.99910 * 348.92990 * 18 16 15 20 20 Si 1.86801 * 119.99989 * 168.93092 * 18 16 15 21 21 H 1.48495 * 109.47081 * 270.00122 * 20 18 16 22 22 H 1.48496 * 109.47102 * 30.00050 * 20 18 16 23 23 H 1.48500 * 109.47129 * 150.00366 * 20 18 16 24 24 C 1.38242 * 119.94855 * 326.24135 * 11 10 8 25 25 C 1.53070 * 108.42306 * 67.51855 * 6 5 3 26 26 C 1.50175 * 109.89193 * 311.09777 * 25 6 5 27 27 O 1.21278 * 118.24191 * 197.60608 * 26 25 6 28 28 N 1.33352 * 123.50700 * 17.58614 * 26 25 6 29 29 H 1.08994 * 109.47627 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46898 * 299.99763 * 1 2 3 31 31 H 1.09000 * 109.47044 * 59.99324 * 1 2 3 32 32 H 1.09000 * 109.46898 * 240.00237 * 2 1 3 33 33 H 1.09000 * 109.47044 * 120.00676 * 2 1 3 34 34 H 1.09002 * 109.60696 * 69.29809 * 5 3 2 35 35 H 1.09003 * 109.58534 * 308.81682 * 5 3 2 36 36 H 0.96997 * 120.00098 * 354.86579 * 10 8 6 37 37 H 1.08008 * 119.78688 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.84063 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.05513 * 180.27983 * 14 13 12 40 40 H 0.97006 * 120.00006 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.16171 * 0.02562 * 24 11 10 42 42 H 1.09001 * 109.39951 * 71.22874 * 25 6 5 43 43 H 1.09002 * 109.39645 * 190.96936 * 25 6 5 44 44 H 0.96997 * 117.94253 * 177.77550 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9808 -0.8384 5 6 3.5618 1.4362 -0.1497 6 6 4.0837 2.8599 0.0785 7 1 5.1486 2.9019 -0.1501 8 6 3.3362 3.8225 -0.8079 9 8 2.3753 4.4234 -0.3759 10 7 3.7355 4.0156 -2.0806 11 6 2.9799 4.8257 -2.9356 12 6 3.6161 5.5943 -3.9076 13 6 2.8781 6.3991 -4.7594 14 6 1.5058 6.4444 -4.6576 15 6 0.8496 5.6781 -3.6763 16 6 -0.5590 5.7240 -3.5619 17 1 -1.0974 4.8713 -3.1754 18 6 -1.2554 6.8742 -3.9495 19 7 -0.6023 7.9773 -4.2107 20 14 -3.1174 6.8346 -4.0938 21 1 -3.4985 6.4399 -5.4737 22 1 -3.6679 5.8505 -3.1276 23 1 -3.6658 8.1819 -3.7950 24 6 1.6033 4.8622 -2.8140 25 6 3.8568 3.2288 1.5467 26 6 2.4436 2.9090 1.9413 27 8 1.9978 3.4230 2.9453 28 7 1.6526 2.0904 1.2467 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8292 1.1051 -1.1532 35 1 3.9988 0.7637 0.5885 36 1 4.5465 3.5930 -2.4039 37 1 4.6919 5.5624 -3.9975 38 1 3.3811 6.9908 -5.5098 39 1 0.9341 7.0701 -5.3271 40 1 -1.0850 8.7746 -4.4797 41 1 1.1092 4.2672 -2.0602 42 1 4.5450 2.6612 2.1731 43 1 4.0389 4.2946 1.6845 44 1 0.7637 1.9149 1.5932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456759922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:22 Heat of formation + Delta-G solvation = -65.835814 kcal Electronic energy + Delta-G solvation = -26979.247595 eV Core-core repulsion = 23281.358587 eV Total energy + Delta-G solvation = -3697.889008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00926 -39.14979 -37.34409 -36.75876 -34.48754 -33.93769 -32.99777 -32.00273 -29.83362 -29.16811 -28.32556 -25.44968 -25.20904 -23.50247 -21.83220 -21.48675 -20.85811 -20.13080 -18.81904 -17.71951 -17.22508 -16.49252 -16.21764 -15.64131 -15.36827 -15.01900 -14.90542 -14.58716 -14.27958 -13.96394 -13.82284 -13.63941 -13.46614 -12.93893 -12.92486 -12.64755 -12.27076 -12.09217 -11.85330 -11.67136 -11.51908 -11.37368 -11.31146 -11.14038 -11.10287 -10.93539 -10.64443 -10.49749 -10.13974 -9.76906 -9.61771 -9.45596 -9.14672 -8.93277 -8.86860 -7.43626 -6.91840 -6.66917 -4.35587 2.53536 2.82177 2.88161 3.10247 3.14075 3.18342 3.30038 3.39001 3.54283 3.97928 4.35178 4.36000 4.45313 4.66054 4.67102 4.93197 4.94065 5.02637 5.17661 5.25283 5.34597 5.48866 5.55246 5.56189 5.69753 5.73594 5.75624 5.81220 5.97762 6.11535 6.21900 6.35839 6.73084 6.92438 6.99020 7.01821 7.06532 7.26360 7.51473 7.53179 7.70309 7.95665 8.07468 8.14345 8.25124 8.41383 8.61410 8.70769 8.93891 8.97347 10.26439 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004337 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.066106 B = 6454.259233 C = 7450.141521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.132 4.132 3 C 0.134 3.866 4 H 0.081 0.919 5 C -0.118 4.118 6 C -0.114 4.114 7 H 0.104 0.896 8 C 0.501 3.499 9 O -0.501 6.501 10 N -0.666 5.666 11 C 0.148 3.852 12 C -0.259 4.259 13 C -0.094 4.094 14 C -0.167 4.167 15 C 0.118 3.882 16 C -0.457 4.457 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.800 5.800 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.263 1.263 23 H -0.278 1.278 24 C -0.206 4.206 25 C -0.117 4.117 26 C 0.538 3.462 27 O -0.564 6.564 28 N -0.706 5.706 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.279 0.721 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.875 -14.887 4.190 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.170 4.170 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.157 4.157 6 C -0.136 4.136 7 H 0.122 0.878 8 C 0.286 3.714 9 O -0.374 6.374 10 N -0.310 5.310 11 C 0.057 3.943 12 C -0.280 4.280 13 C -0.113 4.113 14 C -0.187 4.187 15 C 0.115 3.885 16 C -0.487 4.487 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.426 5.426 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.187 1.187 23 H -0.203 1.203 24 C -0.227 4.227 25 C -0.157 4.157 26 C 0.325 3.675 27 O -0.443 6.443 28 N -0.358 5.358 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.120 -13.908 4.910 16.837 hybrid contribution -0.622 -0.056 -0.273 0.681 sum 7.499 -13.964 4.637 16.514 Atomic orbital electron populations 1.21809 0.95220 1.01978 1.02513 1.21898 0.96870 0.95331 1.02927 1.21039 0.94856 0.93552 0.87644 0.90094 1.21894 0.94813 0.94871 1.04079 1.21491 1.01673 0.95271 0.95123 0.87752 1.20426 0.85567 0.83147 0.82251 1.90839 1.26794 1.46592 1.73159 1.43476 1.27500 1.49224 1.10823 1.17428 0.90648 0.94203 0.92038 1.20052 0.96996 1.06540 1.04439 1.20484 0.94653 0.98011 0.98184 1.21415 0.92746 1.04095 1.00438 1.17509 0.93260 0.89308 0.88415 1.19532 0.91719 1.00076 1.37361 0.90655 1.25877 1.01017 0.94754 0.92655 1.69799 1.37987 1.00879 1.33941 0.86268 0.82211 0.78473 0.79497 1.19351 1.18684 1.20283 1.20930 0.90785 1.08308 1.02716 1.21493 0.94537 1.05032 0.94635 1.19736 0.88025 0.77182 0.82515 1.90729 1.74960 1.51293 1.27361 1.45399 1.18148 1.47712 1.24573 0.92313 0.92703 0.91886 0.90358 0.91310 0.89135 0.89644 0.76900 0.89335 0.89061 0.86102 0.90994 0.87719 0.87751 0.87679 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.76 37.16 0.36 -1.08 16 2 C -0.13 -1.10 5.56 -26.73 -0.15 -1.25 16 3 C 0.13 1.49 2.37 -68.38 -0.16 1.33 16 4 H 0.08 1.15 7.26 -51.93 -0.38 0.78 16 5 C -0.12 -1.00 4.92 -26.59 -0.13 -1.13 16 6 C -0.11 -1.20 3.07 -91.55 -0.28 -1.48 16 7 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 8 C 0.50 8.12 5.38 -10.98 -0.06 8.06 16 9 O -0.50 -10.82 12.29 5.55 0.07 -10.76 16 10 N -0.67 -10.79 5.34 -9.91 -0.05 -10.85 16 11 C 0.15 3.21 6.27 -83.76 -0.52 2.69 16 12 C -0.26 -5.53 9.97 -39.10 -0.39 -5.92 16 13 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 14 C -0.17 -4.35 8.66 -38.84 -0.34 -4.69 16 15 C 0.12 3.21 5.56 -106.85 -0.59 2.62 16 16 C -0.46 -12.49 9.06 -37.74 -0.34 -12.84 16 17 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 18 C 0.07 1.91 5.25 -17.35 -0.09 1.81 16 19 N -0.80 -21.30 10.81 55.55 0.60 -20.70 16 20 Si 0.91 19.37 29.57 -169.99 -5.03 14.34 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.21 -5.18 8.39 -38.68 -0.32 -5.50 16 25 C -0.12 -1.42 5.21 -28.10 -0.15 -1.57 16 26 C 0.54 8.51 6.38 -11.87 -0.08 8.43 16 27 O -0.56 -11.32 17.78 5.56 0.10 -11.22 16 28 N -0.71 -9.58 4.91 -54.87 -0.27 -9.85 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.52 6.67 -51.93 -0.35 0.17 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.55 8.10 -51.93 -0.42 0.12 16 36 H 0.40 4.72 8.82 -40.82 -0.36 4.36 16 37 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.25 6.17 -52.48 -0.32 2.93 16 40 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 41 H 0.10 2.70 6.43 -52.49 -0.34 2.36 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 44 H 0.40 5.32 7.04 -40.82 -0.29 5.03 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -34.47 355.73 -9.09 -43.56 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.23 Total: 13.20 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.64 Total: -13.09 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.28 Total: -41.39 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.47 -9.09 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456759922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.279 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds