Wall clock time and date at job start Tue Mar 31 2020 10:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 H 1.08992 * 109.30139 * 305.41239 * 3 2 1 5 5 C 1.52914 * 109.13967 * 185.94828 * 3 2 1 6 6 C 1.53349 * 108.68531 * 189.06305 * 5 3 2 7 7 H 1.08995 * 109.69976 * 187.26997 * 6 5 3 8 8 C 1.50701 * 109.67193 * 307.78553 * 6 5 3 9 9 O 1.21284 * 119.99752 * 95.28114 * 8 6 5 10 10 N 1.34781 * 119.99819 * 275.27571 * 8 6 5 11 11 C 1.39938 * 119.99665 * 174.85938 * 10 8 6 12 12 C 1.39288 * 119.94459 * 146.21728 * 11 10 8 13 13 C 1.38487 * 120.42875 * 179.97438 * 12 11 10 14 14 C 1.37680 * 120.31963 * 359.76559 * 13 12 11 15 15 C 1.40740 * 119.88827 * 0.52996 * 14 13 12 16 16 C 1.41400 * 120.21227 * 179.72072 * 15 14 13 17 17 H 1.08000 * 119.99915 * 151.91843 * 16 15 14 18 18 C 1.39933 * 120.00069 * 331.91452 * 16 15 14 19 19 N 1.30826 * 119.99910 * 348.92990 * 18 16 15 20 20 Si 1.86801 * 119.99989 * 168.93092 * 18 16 15 21 21 H 1.48495 * 109.47081 * 270.00122 * 20 18 16 22 22 H 1.48496 * 109.47102 * 30.00050 * 20 18 16 23 23 H 1.48500 * 109.47129 * 150.00366 * 20 18 16 24 24 C 1.38242 * 119.94855 * 326.24135 * 11 10 8 25 25 C 1.53070 * 108.42306 * 67.51855 * 6 5 3 26 26 C 1.50175 * 109.89193 * 311.09777 * 25 6 5 27 27 O 1.21278 * 118.24191 * 197.60608 * 26 25 6 28 28 N 1.33352 * 123.50700 * 17.58614 * 26 25 6 29 29 H 1.08994 * 109.47627 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46898 * 299.99763 * 1 2 3 31 31 H 1.09000 * 109.47044 * 59.99324 * 1 2 3 32 32 H 1.09000 * 109.46898 * 240.00237 * 2 1 3 33 33 H 1.09000 * 109.47044 * 120.00676 * 2 1 3 34 34 H 1.09002 * 109.60696 * 69.29809 * 5 3 2 35 35 H 1.09003 * 109.58534 * 308.81682 * 5 3 2 36 36 H 0.96997 * 120.00098 * 354.86579 * 10 8 6 37 37 H 1.08008 * 119.78688 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.84063 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.05513 * 180.27983 * 14 13 12 40 40 H 0.97006 * 120.00006 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.16171 * 0.02562 * 24 11 10 42 42 H 1.09001 * 109.39951 * 71.22874 * 25 6 5 43 43 H 1.09002 * 109.39645 * 190.96936 * 25 6 5 44 44 H 0.96997 * 117.94253 * 177.77550 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9808 -0.8384 5 6 3.5618 1.4362 -0.1497 6 6 4.0837 2.8599 0.0785 7 1 5.1486 2.9019 -0.1501 8 6 3.3362 3.8225 -0.8079 9 8 2.3753 4.4234 -0.3759 10 7 3.7355 4.0156 -2.0806 11 6 2.9799 4.8257 -2.9356 12 6 3.6161 5.5943 -3.9076 13 6 2.8781 6.3991 -4.7594 14 6 1.5058 6.4444 -4.6576 15 6 0.8496 5.6781 -3.6763 16 6 -0.5590 5.7240 -3.5619 17 1 -1.0974 4.8713 -3.1754 18 6 -1.2554 6.8742 -3.9495 19 7 -0.6023 7.9773 -4.2107 20 14 -3.1174 6.8346 -4.0938 21 1 -3.4985 6.4399 -5.4737 22 1 -3.6679 5.8505 -3.1276 23 1 -3.6658 8.1819 -3.7950 24 6 1.6033 4.8622 -2.8140 25 6 3.8568 3.2288 1.5467 26 6 2.4436 2.9090 1.9413 27 8 1.9978 3.4230 2.9453 28 7 1.6526 2.0904 1.2467 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8292 1.1051 -1.1532 35 1 3.9988 0.7637 0.5885 36 1 4.5465 3.5930 -2.4039 37 1 4.6919 5.5624 -3.9975 38 1 3.3811 6.9908 -5.5098 39 1 0.9341 7.0701 -5.3271 40 1 -1.0850 8.7746 -4.4797 41 1 1.1092 4.2672 -2.0602 42 1 4.5450 2.6612 2.1731 43 1 4.0389 4.2946 1.6845 44 1 0.7637 1.9149 1.5932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456759922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:22 Heat of formation + Delta-G solvation = -90.538198 kcal Electronic energy + Delta-G solvation = -26980.318770 eV Core-core repulsion = 23281.358587 eV Total energy + Delta-G solvation = -3698.960183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16058 -40.55646 -38.99681 -37.92786 -36.18862 -35.00097 -34.66677 -33.00812 -31.75137 -30.12757 -29.93947 -27.28578 -26.37960 -24.52199 -23.15140 -22.77436 -22.40687 -21.55293 -20.05495 -19.46249 -18.34447 -17.70643 -17.44963 -17.26971 -16.74933 -16.54971 -16.35825 -16.08438 -15.40682 -15.27666 -14.90560 -14.76252 -14.63674 -14.44986 -14.24651 -14.02911 -13.63970 -13.49426 -13.13630 -12.93586 -12.88890 -12.86277 -12.56066 -12.37382 -12.24132 -12.14605 -11.96422 -11.88185 -11.74608 -11.58182 -11.21262 -10.87299 -10.79312 -10.50970 -10.04504 -9.36391 -8.70639 -8.58732 -6.40300 0.87661 0.99312 1.32072 1.44553 1.46329 1.68890 1.82768 2.17122 2.23820 2.40833 2.74305 3.48634 3.55094 3.57633 3.73062 3.75639 3.99274 4.17034 4.19952 4.41096 4.47179 4.51446 4.59765 4.63363 4.74100 4.76394 4.84340 4.91815 5.03686 5.06586 5.07646 5.11732 5.13551 5.22936 5.26124 5.33717 5.36625 5.76660 5.81335 5.86159 6.07947 6.11999 6.35791 6.43543 6.68539 6.70145 6.93494 7.00955 7.24420 7.40380 8.34948 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004337 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.066106 B = 6454.259233 C = 7450.141521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C 0.126 3.874 4 H 0.039 0.961 5 C -0.113 4.113 6 C -0.098 4.098 7 H 0.161 0.839 8 C 0.496 3.504 9 O -0.563 6.563 10 N -0.652 5.652 11 C 0.158 3.842 12 C -0.245 4.245 13 C -0.096 4.096 14 C -0.194 4.194 15 C 0.084 3.916 16 C -0.501 4.501 17 H 0.062 0.938 18 C 0.032 3.968 19 N -0.833 5.833 20 Si 0.982 3.018 21 H -0.253 1.253 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.227 4.227 25 C -0.115 4.115 26 C 0.524 3.476 27 O -0.623 6.623 28 N -0.704 5.704 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.424 0.576 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.286 0.714 41 H 0.083 0.917 42 H 0.152 0.848 43 H 0.085 0.915 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 -17.193 3.774 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.057 0.943 5 C -0.151 4.151 6 C -0.119 4.119 7 H 0.178 0.822 8 C 0.284 3.716 9 O -0.440 6.440 10 N -0.298 5.298 11 C 0.064 3.936 12 C -0.266 4.266 13 C -0.114 4.114 14 C -0.214 4.214 15 C 0.082 3.918 16 C -0.531 4.531 17 H 0.080 0.920 18 C -0.181 4.181 19 N -0.460 5.460 20 Si 0.803 3.197 21 H -0.178 1.178 22 H -0.191 1.191 23 H -0.191 1.191 24 C -0.249 4.249 25 C -0.154 4.154 26 C 0.313 3.687 27 O -0.507 6.507 28 N -0.353 5.353 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.638 -16.272 4.444 20.493 hybrid contribution -1.583 0.614 -0.123 1.703 sum 10.054 -15.658 4.322 19.103 Atomic orbital electron populations 1.21843 0.96592 1.02603 1.00890 1.21864 0.95655 0.93565 1.04871 1.21240 0.97433 0.94311 0.84827 0.94290 1.22058 0.91972 0.93928 1.07109 1.21584 1.03807 0.94367 0.92116 0.82169 1.21612 0.84786 0.82833 0.82321 1.90839 1.29702 1.49104 1.74315 1.43359 1.27794 1.48362 1.10330 1.17481 0.89817 0.93977 0.92309 1.20526 0.99152 1.04301 1.02575 1.20863 0.93564 0.98102 0.98914 1.21352 0.94310 1.04945 1.00791 1.17856 0.93819 0.90635 0.89534 1.19719 0.92685 1.00790 1.39950 0.91994 1.26697 1.05837 0.93829 0.91748 1.69857 1.39892 1.01455 1.34786 0.85216 0.75976 0.78644 0.79907 1.17755 1.19131 1.19119 1.20878 0.92763 1.08785 1.02462 1.21580 0.92639 1.04618 0.96599 1.20587 0.89786 0.76494 0.81837 1.90689 1.76487 1.53488 1.30036 1.45567 1.17739 1.47073 1.24922 0.90484 0.93810 0.94143 0.88100 0.89351 0.86295 0.85714 0.73705 0.84697 0.86075 0.87911 0.90316 0.89897 0.83084 0.89689 0.77437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.76 71.98 0.70 -2.26 16 2 C -0.12 -1.76 5.56 30.59 0.17 -1.59 16 3 C 0.13 2.64 2.37 45.10 0.11 2.75 16 4 H 0.04 1.16 7.26 -2.39 -0.02 1.14 16 5 C -0.11 -1.36 4.92 30.68 0.15 -1.21 16 6 C -0.10 -1.64 3.07 -11.40 -0.03 -1.68 16 7 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 8 C 0.50 15.31 5.38 87.66 0.47 15.78 16 9 O -0.56 -25.16 12.29 -3.04 -0.04 -25.20 16 10 N -0.65 -19.32 5.34 -303.65 -1.62 -20.94 16 11 C 0.16 6.68 6.27 38.10 0.24 6.92 16 12 C -0.24 -9.79 9.97 22.58 0.23 -9.56 16 13 C -0.10 -4.31 10.02 22.20 0.22 -4.08 16 14 C -0.19 -10.47 8.66 22.75 0.20 -10.27 16 15 C 0.08 4.85 5.56 -21.31 -0.12 4.73 16 16 C -0.50 -29.46 9.06 23.46 0.21 -29.25 16 17 H 0.06 3.61 7.87 -2.91 -0.02 3.59 16 18 C 0.03 1.74 5.25 85.25 0.45 2.19 16 19 N -0.83 -46.44 10.81 21.82 0.24 -46.21 16 20 Si 0.98 41.52 29.57 68.60 2.03 43.55 16 21 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C -0.23 -11.96 8.39 22.85 0.19 -11.77 16 25 C -0.11 -2.49 5.21 29.71 0.15 -2.33 16 26 C 0.52 16.64 6.38 87.71 0.56 17.20 16 27 O -0.62 -26.18 17.78 -3.02 -0.05 -26.23 16 28 N -0.70 -19.38 4.91 -446.68 -2.19 -21.58 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 0.88 6.67 -2.39 -0.02 0.86 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.71 8.10 -2.39 -0.02 0.69 16 36 H 0.42 7.89 8.82 -92.71 -0.82 7.07 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 38 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 39 H 0.10 5.82 6.17 -2.91 -0.02 5.80 16 40 H 0.29 14.42 8.30 -92.70 -0.77 13.65 16 41 H 0.08 4.64 6.43 -2.91 -0.02 4.62 16 42 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 44 H 0.39 11.21 7.04 -92.71 -0.65 10.56 16 Total: -1.00 -86.07 355.73 1.82 -84.25 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.43 Total: 36.81 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 3.90 Total: -24.45 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.58 Total: -88.73 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -86.07 1.82 -84.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456759922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.288 kcal (2) G-P(sol) polarization free energy of solvation -86.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds