Wall clock time and date at job start Tue Mar 31 2020 10:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47105 * 2 1 4 4 H 1.09004 * 109.30051 * 54.58230 * 3 2 1 5 5 C 1.52928 * 109.29891 * 173.93612 * 3 2 1 6 6 C 1.53348 * 108.66709 * 171.04312 * 5 3 2 7 7 H 1.09006 * 109.66950 * 52.26803 * 6 5 3 8 8 C 1.50695 * 109.67274 * 172.75749 * 6 5 3 9 9 O 1.21286 * 120.00347 * 359.50998 * 8 6 5 10 10 N 1.34783 * 120.00205 * 179.22602 * 8 6 5 11 11 C 1.39933 * 119.99971 * 175.17267 * 10 8 6 12 12 C 1.39288 * 119.95344 * 325.54522 * 11 10 8 13 13 C 1.38490 * 120.43234 * 179.76067 * 12 11 10 14 14 C 1.37683 * 120.31877 * 0.51806 * 13 12 11 15 15 C 1.40739 * 119.88517 * 359.74124 * 14 13 12 16 16 C 1.41404 * 120.20981 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00280 * 205.18658 * 16 15 14 18 18 C 1.39941 * 120.00042 * 25.19046 * 16 15 14 19 19 N 1.30831 * 119.99548 * 16.78095 * 18 16 15 20 20 Si 1.86796 * 120.00196 * 196.78220 * 18 16 15 21 21 H 1.48502 * 109.47026 * 89.99869 * 20 18 16 22 22 H 1.48502 * 109.47211 * 209.99642 * 20 18 16 23 23 H 1.48494 * 109.47150 * 330.00126 * 20 18 16 24 24 C 1.38248 * 119.94268 * 145.82118 * 11 10 8 25 25 C 1.53067 * 108.45732 * 292.51468 * 6 5 3 26 26 C 1.50172 * 109.89159 * 48.88135 * 25 6 5 27 27 O 1.21284 * 118.24209 * 162.43612 * 26 25 6 28 28 N 1.33357 * 123.51123 * 342.41922 * 26 25 6 29 29 H 1.08995 * 109.47496 * 300.00399 * 1 2 3 30 30 H 1.09007 * 109.46861 * 60.00241 * 1 2 3 31 31 H 1.08997 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47496 * 239.99601 * 2 1 3 33 33 H 1.09007 * 109.46861 * 119.99759 * 2 1 3 34 34 H 1.09002 * 109.58527 * 51.30821 * 5 3 2 35 35 H 1.08997 * 109.62738 * 290.81552 * 5 3 2 36 36 H 0.96995 * 119.99647 * 355.18070 * 10 8 6 37 37 H 1.08011 * 119.78144 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.83867 * 180.27682 * 13 12 11 39 39 H 1.07994 * 120.05359 * 179.71789 * 14 13 12 40 40 H 0.97001 * 119.99727 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.16021 * 359.95930 * 24 11 10 42 42 H 1.09010 * 109.39925 * 169.01314 * 25 6 5 43 43 H 1.08999 * 109.39733 * 288.74802 * 25 6 5 44 44 H 0.96992 * 117.94682 * 182.22076 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 0.8384 5 6 3.5616 1.4406 0.1525 6 6 4.0793 2.8662 -0.0736 7 1 3.5359 3.5600 0.5679 8 6 5.5510 2.9279 0.2446 9 8 6.1315 1.9332 0.6249 10 7 6.2235 4.0871 0.1011 11 6 7.5646 4.1710 0.4918 12 6 8.0140 3.4491 1.5949 13 6 9.3402 3.5209 1.9873 14 6 10.2273 4.3158 1.2968 15 6 9.7865 5.0551 0.1833 16 6 10.6915 5.8741 -0.5305 17 1 10.3261 6.7220 -1.0908 18 6 12.0608 5.5859 -0.5112 19 7 12.4756 4.4067 -0.1249 20 14 13.2962 6.8847 -1.0367 21 1 13.7016 7.6888 0.1441 22 1 14.4915 6.2238 -1.6196 23 1 12.6776 7.7740 -2.0523 24 6 8.4401 4.9747 -0.2145 25 6 3.8534 3.2367 -1.5415 26 6 2.4419 2.9128 -1.9388 27 8 1.9961 3.4264 -2.9430 28 7 1.6525 2.0904 -1.2467 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0020 0.7703 -0.5858 35 1 3.8286 1.1093 1.1560 36 1 5.7779 4.8632 -0.2729 37 1 7.3246 2.8259 2.1454 38 1 9.6794 2.9536 2.8415 39 1 11.2595 4.3721 1.6093 40 1 13.4247 4.2068 -0.1118 41 1 8.0918 5.5377 -1.0676 42 1 4.0321 4.3035 -1.6773 43 1 4.5445 2.6726 -2.1678 44 1 0.7648 1.9125 -1.5947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456759933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:26 Heat of formation + Delta-G solvation = -71.479612 kcal Electronic energy + Delta-G solvation = -25731.393248 eV Core-core repulsion = 22033.259507 eV Total energy + Delta-G solvation = -3698.133741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97556 -39.55572 -37.53671 -37.03093 -34.49968 -34.18571 -33.02110 -32.33402 -29.85925 -29.40457 -28.26824 -25.73227 -25.24578 -23.64294 -22.14541 -21.28706 -20.86679 -19.71148 -19.43180 -17.75123 -17.56507 -16.90352 -16.50510 -15.64191 -15.52062 -15.15082 -15.01641 -14.70188 -14.51099 -14.15073 -14.02107 -13.83547 -13.60333 -13.16281 -12.92788 -12.85729 -12.32538 -12.24886 -11.79065 -11.71820 -11.60107 -11.38601 -11.31623 -11.23535 -11.18400 -11.09101 -10.92760 -10.55228 -10.31987 -10.07124 -9.64129 -9.41170 -9.36455 -9.22125 -8.94962 -7.49509 -6.97086 -6.74439 -4.38435 2.41464 2.49227 2.79460 2.99020 3.07020 3.10132 3.13568 3.27669 3.46359 3.92867 4.15687 4.33351 4.34566 4.47732 4.63594 4.68035 4.71368 4.83031 5.00114 5.15552 5.17332 5.26058 5.45238 5.47086 5.56101 5.63926 5.66279 5.74919 5.80505 5.95507 6.26315 6.49780 6.51383 6.69691 6.89897 6.97684 7.02228 7.06813 7.23138 7.56165 7.62716 7.93376 7.97129 8.01063 8.10062 8.27830 8.52316 8.65371 8.87338 8.94375 10.19052 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002576 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.323301 B =10866.044028 C =11643.575026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.139 3.861 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.110 4.110 7 H 0.105 0.895 8 C 0.511 3.489 9 O -0.517 6.517 10 N -0.665 5.665 11 C 0.151 3.849 12 C -0.227 4.227 13 C -0.096 4.096 14 C -0.167 4.167 15 C 0.122 3.878 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.243 4.243 25 C -0.129 4.129 26 C 0.526 3.474 27 O -0.557 6.557 28 N -0.715 5.715 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.280 0.720 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 -5.072 1.880 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.132 4.132 7 H 0.123 0.877 8 C 0.297 3.703 9 O -0.392 6.392 10 N -0.308 5.308 11 C 0.060 3.940 12 C -0.248 4.248 13 C -0.115 4.115 14 C -0.187 4.187 15 C 0.119 3.881 16 C -0.494 4.494 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.265 4.265 25 C -0.169 4.169 26 C 0.313 3.687 27 O -0.435 6.435 28 N -0.368 5.368 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.234 0.766 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.888 -5.631 1.749 18.834 hybrid contribution 0.125 0.753 -0.546 0.938 sum -17.762 -4.878 1.204 18.459 Atomic orbital electron populations 1.21812 0.95406 1.02256 1.01852 1.21921 0.96365 0.95417 1.03761 1.21100 0.95601 0.93676 0.86225 0.90369 1.21789 0.92580 0.95378 1.05282 1.21468 0.94511 0.99915 0.97327 0.87720 1.20291 0.88257 0.83379 0.78369 1.90738 1.69152 1.34321 1.44989 1.43508 1.11730 1.12918 1.62646 1.17422 0.81431 1.00136 0.95028 1.20269 0.96381 1.07987 1.00123 1.20584 0.93151 0.98845 0.98880 1.21381 0.99451 1.01172 0.96665 1.17380 0.90367 0.90218 0.90171 1.19527 0.90930 1.11481 1.27451 0.90439 1.25901 0.99639 0.95347 0.93319 1.69833 1.17139 1.19429 1.35489 0.86301 0.79467 0.81227 0.79641 1.19287 1.20350 1.18661 1.20718 0.94654 1.08698 1.02430 1.21685 0.94216 1.05066 0.95960 1.20014 0.87879 0.77904 0.82879 1.90777 1.74526 1.51897 1.26326 1.45697 1.18409 1.47418 1.25322 0.92282 0.92838 0.92143 0.90954 0.89936 0.89967 0.88463 0.76595 0.88237 0.89053 0.86308 0.90866 0.88651 0.87401 0.87335 0.76573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.76 37.16 0.36 -0.38 16 2 C -0.14 -0.77 5.57 -26.73 -0.15 -0.92 16 3 C 0.14 0.95 3.06 -68.37 -0.21 0.74 16 4 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 5 C -0.11 -1.02 3.99 -26.59 -0.11 -1.13 16 6 C -0.11 -1.14 2.61 -91.56 -0.24 -1.38 16 7 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 8 C 0.51 7.92 6.86 -10.99 -0.08 7.84 16 9 O -0.52 -10.10 13.64 5.55 0.08 -10.03 16 10 N -0.66 -11.00 5.26 -9.91 -0.05 -11.06 16 11 C 0.15 3.30 6.25 -83.77 -0.52 2.78 16 12 C -0.23 -5.23 8.66 -39.10 -0.34 -5.57 16 13 C -0.10 -2.29 10.02 -39.69 -0.40 -2.68 16 14 C -0.17 -4.34 8.69 -38.84 -0.34 -4.67 16 15 C 0.12 3.20 5.57 -106.85 -0.59 2.60 16 16 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 17 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 18 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 19 N -0.79 -20.51 10.94 55.55 0.61 -19.90 16 20 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.24 -5.77 9.70 -38.68 -0.38 -6.14 16 25 C -0.13 -1.34 5.17 -28.10 -0.15 -1.49 16 26 C 0.53 5.97 7.71 -11.87 -0.09 5.88 16 27 O -0.56 -8.54 17.78 5.55 0.10 -8.44 16 28 N -0.72 -6.02 5.12 -54.85 -0.28 -6.30 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.25 6.67 -51.93 -0.35 -0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 36 H 0.40 5.23 8.39 -40.82 -0.34 4.89 16 37 H 0.10 2.24 6.48 -52.48 -0.34 1.90 16 38 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 39 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 41 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.11 1.02 7.84 -51.92 -0.41 0.61 16 43 H 0.11 1.21 8.09 -51.93 -0.42 0.79 16 44 H 0.40 3.03 7.04 -40.82 -0.29 2.74 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -32.20 359.32 -9.05 -41.25 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.23 Total: 10.77 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.65 Total: -15.19 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.27 Total: -37.26 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.20 -9.05 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456759933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.230 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds