Wall clock time and date at job start Tue Mar 31 2020 10:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47105 * 2 1 4 4 H 1.09004 * 109.30051 * 54.58230 * 3 2 1 5 5 C 1.52928 * 109.29891 * 173.93612 * 3 2 1 6 6 C 1.53348 * 108.66709 * 171.04312 * 5 3 2 7 7 H 1.09006 * 109.66950 * 52.26803 * 6 5 3 8 8 C 1.50695 * 109.67274 * 172.75749 * 6 5 3 9 9 O 1.21286 * 120.00347 * 359.50998 * 8 6 5 10 10 N 1.34783 * 120.00205 * 179.22602 * 8 6 5 11 11 C 1.39933 * 119.99971 * 175.17267 * 10 8 6 12 12 C 1.39288 * 119.95344 * 325.54522 * 11 10 8 13 13 C 1.38490 * 120.43234 * 179.76067 * 12 11 10 14 14 C 1.37683 * 120.31877 * 0.51806 * 13 12 11 15 15 C 1.40739 * 119.88517 * 359.74124 * 14 13 12 16 16 C 1.41404 * 120.20981 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00280 * 205.18658 * 16 15 14 18 18 C 1.39941 * 120.00042 * 25.19046 * 16 15 14 19 19 N 1.30831 * 119.99548 * 16.78095 * 18 16 15 20 20 Si 1.86796 * 120.00196 * 196.78220 * 18 16 15 21 21 H 1.48502 * 109.47026 * 89.99869 * 20 18 16 22 22 H 1.48502 * 109.47211 * 209.99642 * 20 18 16 23 23 H 1.48494 * 109.47150 * 330.00126 * 20 18 16 24 24 C 1.38248 * 119.94268 * 145.82118 * 11 10 8 25 25 C 1.53067 * 108.45732 * 292.51468 * 6 5 3 26 26 C 1.50172 * 109.89159 * 48.88135 * 25 6 5 27 27 O 1.21284 * 118.24209 * 162.43612 * 26 25 6 28 28 N 1.33357 * 123.51123 * 342.41922 * 26 25 6 29 29 H 1.08995 * 109.47496 * 300.00399 * 1 2 3 30 30 H 1.09007 * 109.46861 * 60.00241 * 1 2 3 31 31 H 1.08997 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47496 * 239.99601 * 2 1 3 33 33 H 1.09007 * 109.46861 * 119.99759 * 2 1 3 34 34 H 1.09002 * 109.58527 * 51.30821 * 5 3 2 35 35 H 1.08997 * 109.62738 * 290.81552 * 5 3 2 36 36 H 0.96995 * 119.99647 * 355.18070 * 10 8 6 37 37 H 1.08011 * 119.78144 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.83867 * 180.27682 * 13 12 11 39 39 H 1.07994 * 120.05359 * 179.71789 * 14 13 12 40 40 H 0.97001 * 119.99727 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.16021 * 359.95930 * 24 11 10 42 42 H 1.09010 * 109.39925 * 169.01314 * 25 6 5 43 43 H 1.08999 * 109.39733 * 288.74802 * 25 6 5 44 44 H 0.96992 * 117.94682 * 182.22076 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 0.8384 5 6 3.5616 1.4406 0.1525 6 6 4.0793 2.8662 -0.0736 7 1 3.5359 3.5600 0.5679 8 6 5.5510 2.9279 0.2446 9 8 6.1315 1.9332 0.6249 10 7 6.2235 4.0871 0.1011 11 6 7.5646 4.1710 0.4918 12 6 8.0140 3.4491 1.5949 13 6 9.3402 3.5209 1.9873 14 6 10.2273 4.3158 1.2968 15 6 9.7865 5.0551 0.1833 16 6 10.6915 5.8741 -0.5305 17 1 10.3261 6.7220 -1.0908 18 6 12.0608 5.5859 -0.5112 19 7 12.4756 4.4067 -0.1249 20 14 13.2962 6.8847 -1.0367 21 1 13.7016 7.6888 0.1441 22 1 14.4915 6.2238 -1.6196 23 1 12.6776 7.7740 -2.0523 24 6 8.4401 4.9747 -0.2145 25 6 3.8534 3.2367 -1.5415 26 6 2.4419 2.9128 -1.9388 27 8 1.9961 3.4264 -2.9430 28 7 1.6525 2.0904 -1.2467 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0020 0.7703 -0.5858 35 1 3.8286 1.1093 1.1560 36 1 5.7779 4.8632 -0.2729 37 1 7.3246 2.8259 2.1454 38 1 9.6794 2.9536 2.8415 39 1 11.2595 4.3721 1.6093 40 1 13.4247 4.2068 -0.1118 41 1 8.0918 5.5377 -1.0676 42 1 4.0321 4.3035 -1.6773 43 1 4.5445 2.6726 -2.1678 44 1 0.7648 1.9125 -1.5947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456759933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:25 Heat of formation + Delta-G solvation = -92.120405 kcal Electronic energy + Delta-G solvation = -25732.288300 eV Core-core repulsion = 22033.259507 eV Total energy + Delta-G solvation = -3699.028793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96729 -40.82819 -39.08055 -38.04432 -36.15206 -35.21341 -34.59049 -33.03813 -31.76168 -30.31296 -29.75762 -27.20242 -26.57906 -24.55592 -23.03669 -22.77163 -22.43557 -21.06035 -20.29359 -19.41227 -18.52387 -18.02123 -17.53095 -17.27291 -16.77992 -16.51744 -16.41635 -15.95411 -15.48879 -15.33128 -15.08272 -14.74860 -14.64298 -14.35387 -14.34712 -14.07128 -13.82542 -13.50980 -13.03738 -12.94490 -12.90070 -12.71729 -12.39991 -12.32209 -12.24888 -12.11979 -11.95098 -11.84660 -11.75792 -11.44319 -11.28532 -11.10502 -10.87543 -10.49623 -10.11052 -9.41044 -8.76441 -8.59650 -6.35440 0.86170 0.97942 1.40039 1.50489 1.53384 1.53728 1.75210 2.15334 2.23785 2.24904 2.76029 3.34240 3.51023 3.57823 3.68034 3.73938 3.99648 4.07101 4.19286 4.28806 4.44356 4.50026 4.54267 4.65412 4.68041 4.73972 4.86439 4.97152 5.02729 5.05108 5.12337 5.17202 5.18536 5.23107 5.28411 5.35042 5.44050 5.75263 5.80663 5.84887 6.09153 6.12476 6.28165 6.29796 6.61561 6.72378 6.93559 6.99349 7.14561 7.27695 8.34943 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002576 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.323301 B =10866.044028 C =11643.575026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.145 3.855 4 H 0.103 0.897 5 C -0.112 4.112 6 C -0.093 4.093 7 H 0.137 0.863 8 C 0.513 3.487 9 O -0.557 6.557 10 N -0.659 5.659 11 C 0.164 3.836 12 C -0.235 4.235 13 C -0.099 4.099 14 C -0.196 4.196 15 C 0.093 3.907 16 C -0.496 4.496 17 H 0.080 0.920 18 C 0.033 3.967 19 N -0.827 5.827 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.255 4.255 25 C -0.126 4.126 26 C 0.528 3.472 27 O -0.601 6.601 28 N -0.702 5.702 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.419 0.581 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.287 0.713 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.286 -4.738 2.108 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.041 3.959 4 H 0.121 0.879 5 C -0.150 4.150 6 C -0.114 4.114 7 H 0.155 0.845 8 C 0.301 3.699 9 O -0.434 6.434 10 N -0.304 5.304 11 C 0.070 3.930 12 C -0.256 4.256 13 C -0.117 4.117 14 C -0.216 4.216 15 C 0.090 3.910 16 C -0.526 4.526 17 H 0.098 0.902 18 C -0.182 4.182 19 N -0.453 5.453 20 Si 0.805 3.195 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.277 4.277 25 C -0.166 4.166 26 C 0.316 3.684 27 O -0.483 6.483 28 N -0.354 5.354 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.256 0.744 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -19.738 -5.315 1.997 20.539 hybrid contribution 0.579 0.523 -0.571 0.967 sum -19.160 -4.792 1.426 19.801 Atomic orbital electron populations 1.21810 0.94474 1.02678 1.02264 1.21899 0.97090 0.94369 1.03807 1.21209 0.94004 0.94746 0.85992 0.87940 1.21801 0.94090 0.94160 1.04947 1.21436 0.90546 1.01656 0.97798 0.84529 1.21164 0.89998 0.82053 0.76656 1.90725 1.70470 1.35621 1.46593 1.43481 1.09837 1.14439 1.62631 1.17434 0.83585 0.98167 0.93778 1.20449 0.96170 1.08287 1.00713 1.20821 0.93469 0.98318 0.99133 1.21313 0.99173 1.03208 0.97903 1.17765 0.91829 0.90792 0.90597 1.19813 0.92147 1.12092 1.28533 0.90209 1.26797 1.01166 0.97263 0.92939 1.69900 1.17976 1.21193 1.36248 0.85170 0.76743 0.78204 0.79381 1.18628 1.19545 1.18041 1.20894 0.94232 1.09439 1.03146 1.21655 0.93642 1.05760 0.95590 1.20052 0.88076 0.77851 0.82415 1.90766 1.75327 1.53929 1.28314 1.45678 1.18297 1.46093 1.25342 0.91435 0.92843 0.91819 0.91858 0.89067 0.91390 0.88338 0.74370 0.87483 0.87311 0.87959 0.90194 0.87303 0.86222 0.88279 0.75829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.76 71.98 0.70 -0.35 16 2 C -0.13 -1.17 5.57 30.59 0.17 -1.00 16 3 C 0.14 1.53 3.06 45.11 0.14 1.67 16 4 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 5 C -0.11 -1.78 3.99 30.69 0.12 -1.66 16 6 C -0.09 -1.67 2.61 -11.40 -0.03 -1.70 16 7 H 0.14 1.70 8.13 -2.38 -0.02 1.68 16 8 C 0.51 14.99 6.86 87.65 0.60 15.60 16 9 O -0.56 -21.24 13.64 -3.05 -0.04 -21.28 16 10 N -0.66 -20.73 5.26 -303.65 -1.60 -22.33 16 11 C 0.16 7.06 6.25 38.10 0.24 7.30 16 12 C -0.24 -10.82 8.66 22.58 0.20 -10.63 16 13 C -0.10 -4.79 10.02 22.20 0.22 -4.57 16 14 C -0.20 -10.53 8.69 22.75 0.20 -10.33 16 15 C 0.09 5.02 5.57 -21.31 -0.12 4.90 16 16 C -0.50 -26.52 9.05 23.46 0.21 -26.30 16 17 H 0.08 4.06 7.90 -2.91 -0.02 4.03 16 18 C 0.03 1.67 5.16 85.25 0.44 2.11 16 19 N -0.83 -43.84 10.94 21.83 0.24 -43.60 16 20 Si 0.98 38.10 29.59 68.60 2.03 40.13 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 C -0.26 -12.18 9.70 22.85 0.22 -11.96 16 25 C -0.13 -2.38 5.17 29.71 0.15 -2.23 16 26 C 0.53 11.04 7.71 87.71 0.68 11.72 16 27 O -0.60 -17.87 17.78 -3.04 -0.05 -17.92 16 28 N -0.70 -10.10 5.12 -446.64 -2.29 -12.39 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.37 6.67 -2.38 -0.02 0.35 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.10 1.61 7.89 -2.39 -0.02 1.59 16 36 H 0.42 9.99 8.39 -92.71 -0.78 9.21 16 37 H 0.11 4.74 6.48 -2.90 -0.02 4.72 16 38 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 39 H 0.10 5.73 6.17 -2.91 -0.02 5.71 16 40 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 41 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.12 1.98 7.84 -2.38 -0.02 1.96 16 43 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 44 H 0.40 5.20 7.04 -92.71 -0.65 4.55 16 Total: -1.00 -71.77 359.32 2.04 -69.73 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.39 Total: 35.10 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.14 Total: -27.43 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.65 Total: -78.33 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.10 Total: -39.20 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -71.77 2.04 -69.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456759933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.393 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds