Wall clock time and date at job start Tue Mar 31 2020 11:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00418 * 2 1 4 4 N 1.46502 * 109.47005 * 124.99921 * 3 2 1 5 5 C 1.46499 * 119.99936 * 275.00355 * 4 3 2 6 6 C 1.50701 * 109.46892 * 274.99996 * 5 4 3 7 7 H 1.08001 * 120.00365 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00124 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00383 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99895 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47505 * 89.99600 * 10 8 6 12 12 H 1.48500 * 109.47084 * 210.00062 * 10 8 6 13 13 H 1.48509 * 109.46996 * 329.99710 * 10 8 6 14 14 S 1.65599 * 119.99727 * 95.00367 * 4 3 2 15 15 O 1.42100 * 106.40241 * 156.45875 * 14 4 3 16 16 O 1.42096 * 106.40379 * 23.53497 * 14 4 3 17 17 N 1.65608 * 107.21718 * 269.99659 * 14 4 3 18 18 C 1.46493 * 119.99916 * 269.72928 * 17 14 4 19 19 C 1.52997 * 109.47398 * 95.00006 * 18 17 14 20 20 C 1.53003 * 109.47241 * 179.97438 * 19 18 17 21 21 C 1.46494 * 119.99583 * 90.00246 * 17 14 4 22 22 C 1.53001 * 109.47275 * 95.00419 * 21 17 14 23 23 C 1.53001 * 117.49565 * 243.61899 * 22 21 17 24 24 C 1.52995 * 60.00131 * 252.50740 * 23 22 21 25 25 H 1.08000 * 120.00074 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99498 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99128 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46986 * 5.00094 * 3 2 1 29 29 H 1.08998 * 109.47288 * 244.99951 * 3 2 1 30 30 H 1.08997 * 109.47561 * 34.99712 * 5 4 3 31 31 H 1.09003 * 109.47156 * 155.00554 * 5 4 3 32 32 H 0.96998 * 120.00155 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46868 * 214.99641 * 18 17 14 34 34 H 1.09004 * 109.47439 * 334.99764 * 18 17 14 35 35 H 1.08995 * 109.47096 * 299.99700 * 19 18 17 36 36 H 1.08997 * 109.47293 * 59.99772 * 19 18 17 37 37 H 1.09000 * 109.47191 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47044 * 299.99646 * 20 19 18 39 39 H 1.08997 * 109.47066 * 59.99753 * 20 19 18 40 40 H 1.09005 * 109.47101 * 215.00381 * 21 17 14 41 41 H 1.09001 * 109.47746 * 334.99625 * 21 17 14 42 42 H 1.08999 * 115.54940 * 29.31961 * 22 21 17 43 43 H 1.09001 * 117.50258 * 359.97438 * 23 22 21 44 44 H 1.08998 * 117.49968 * 145.01767 * 23 22 21 45 45 H 1.08997 * 117.50419 * 252.51345 * 24 23 22 46 46 H 1.09001 * 117.50050 * 107.48819 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2644 2.5450 7 1 2.9556 3.8412 1.7043 8 6 2.2101 3.9027 3.7035 9 7 2.2722 5.2138 3.7846 10 14 1.5957 2.9051 5.1584 11 1 2.7413 2.5493 6.0338 12 1 0.6137 3.7084 5.9301 13 1 0.9437 1.6643 4.6677 14 16 4.5714 0.8757 0.9173 15 8 5.3149 1.5043 1.9523 16 8 4.8568 1.0541 -0.4632 17 7 4.6541 -0.7531 1.2051 18 6 4.9292 -1.2449 2.5573 19 6 3.6090 -1.5570 3.2649 20 6 3.8963 -2.0712 4.6770 21 6 4.4583 -1.7019 0.1062 22 6 5.8179 -2.1044 -0.4685 23 6 6.1113 -1.7241 -1.9212 24 6 5.8349 -3.1832 -1.5534 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9313 30 1 1.4984 1.4370 2.5982 31 1 3.1614 1.3202 3.2221 32 1 1.9981 5.6629 4.5995 33 1 5.5329 -2.1506 2.4987 34 1 5.4706 -0.4829 3.1180 35 1 3.0053 -0.6514 3.3235 36 1 3.0676 -2.3189 2.7043 37 1 2.9558 -2.2940 5.1809 38 1 4.4999 -2.9770 4.6180 39 1 4.4380 -1.3096 5.2378 40 1 3.9444 -2.5882 0.4787 41 1 3.8576 -1.2350 -0.6743 42 1 6.6501 -2.0850 0.2351 43 1 5.3356 -1.1874 -2.4675 44 1 7.1368 -1.4542 -2.1734 45 1 6.6785 -3.8734 -1.5636 46 1 4.8775 -3.6063 -1.8575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490079465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:27 Heat of formation + Delta-G solvation = -53.195297 kcal Electronic energy + Delta-G solvation = -26772.688845 eV Core-core repulsion = 23210.791923 eV Total energy + Delta-G solvation = -3561.896922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.08828 -38.42502 -38.00432 -36.88171 -36.85567 -34.98122 -33.74389 -33.47643 -29.92530 -28.43785 -26.55267 -25.88502 -23.80438 -23.13699 -22.65822 -21.51090 -20.97670 -19.69988 -19.17745 -18.74054 -18.28886 -17.63093 -16.85280 -16.13841 -16.04005 -15.68921 -15.61980 -15.53083 -15.15701 -14.64326 -14.51033 -14.32688 -13.93942 -13.72589 -13.54705 -13.46080 -13.28327 -13.13315 -13.02513 -12.91264 -12.63008 -12.51709 -12.42360 -12.34327 -12.23037 -12.19662 -11.99859 -11.89011 -11.73987 -11.43641 -11.26012 -10.79190 -10.77759 -10.30115 -10.02533 -9.80078 -8.30029 -6.35474 -0.40132 1.33773 1.37379 1.40052 1.46647 2.05633 2.33729 2.53124 2.97516 3.03888 3.34982 3.75555 3.83162 3.92237 4.03838 4.13498 4.15912 4.18773 4.26909 4.31569 4.44597 4.49158 4.65731 4.69333 4.76078 4.80620 4.81027 4.87714 4.94052 4.98656 5.03022 5.09076 5.12109 5.22512 5.29126 5.32224 5.33871 5.37534 5.46225 5.52383 5.58588 5.73105 5.82767 5.98964 6.30479 6.67132 7.27350 8.87704 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.005549 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.630489 B = 5044.555273 C = 5422.133138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.182 4.182 3 C 0.139 3.861 4 N -0.988 5.988 5 C 0.244 3.756 6 C -0.542 4.542 7 H 0.026 0.974 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.937 3.063 11 H -0.267 1.267 12 H -0.278 1.278 13 H -0.229 1.229 14 S 2.783 3.217 15 O -1.012 7.012 16 O -1.000 7.000 17 N -0.994 5.994 18 C 0.112 3.888 19 C -0.150 4.150 20 C -0.149 4.149 21 C 0.152 3.848 22 C -0.188 4.188 23 C -0.195 4.195 24 C -0.147 4.147 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -23.708 -5.833 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.014 3.986 4 N -0.826 5.826 5 C 0.119 3.881 6 C -0.581 4.581 7 H 0.044 0.956 8 C -0.188 4.188 9 N -0.588 5.588 10 Si 0.759 3.241 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.151 1.151 14 S 2.793 3.207 15 O -0.996 6.996 16 O -0.984 6.984 17 N -0.833 5.833 18 C -0.013 4.013 19 C -0.189 4.189 20 C -0.207 4.207 21 C 0.027 3.973 22 C -0.208 4.208 23 C -0.232 4.232 24 C -0.184 4.184 25 H 0.142 0.858 26 H 0.111 0.889 27 H 0.143 0.857 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.893 -22.966 -5.972 23.746 hybrid contribution -0.215 0.832 0.750 1.141 sum 0.678 -22.134 -5.221 22.752 Atomic orbital electron populations 1.24038 0.95383 1.02846 0.98139 1.23357 0.96921 0.97858 1.01983 1.20476 0.92977 0.97181 0.87952 1.57480 1.28464 1.80022 1.16680 1.19094 0.96322 0.92746 0.79900 1.21703 1.43544 0.92554 1.00303 0.95589 1.25889 0.95269 0.95936 1.01716 1.70067 1.49569 1.10078 1.29108 0.85875 0.79115 0.80237 0.78899 1.19215 1.20342 1.15117 1.01701 0.73220 0.73680 0.72102 1.93545 1.70823 1.75141 1.60059 1.93498 1.84165 1.86079 1.34678 1.57816 1.86275 1.23596 1.15662 1.21594 0.97967 1.01603 0.80128 1.22063 0.97507 1.01864 0.97441 1.21704 1.02332 1.01485 0.95190 1.21069 0.95196 0.93665 0.87322 1.22830 0.99658 1.05931 0.92426 1.23057 1.02592 0.99490 0.98042 1.23027 1.04362 0.90812 1.00245 0.85845 0.88948 0.85689 0.90803 0.89480 0.93251 0.95004 0.92359 0.86936 0.91618 0.93730 0.89269 0.91860 0.90449 0.93757 0.86781 0.90430 0.87921 0.89315 0.89453 0.87468 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 14.32 67.77 0.97 -2.69 16 2 C -0.18 -4.59 9.84 25.64 0.25 -4.34 16 3 C 0.14 4.78 6.12 85.63 0.52 5.30 16 4 N -0.99 -40.06 2.81 -523.92 -1.47 -41.53 16 5 C 0.24 11.38 3.50 85.63 0.30 11.68 16 6 C -0.54 -32.02 9.94 25.60 0.25 -31.76 16 7 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 8 C 0.01 0.57 5.47 84.66 0.46 1.04 16 9 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 10 Si 0.94 43.08 27.47 68.60 1.88 44.96 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.23 -9.14 6.54 99.48 0.65 -8.48 16 14 S 2.78 111.30 6.02 -56.49 -0.34 110.96 16 15 O -1.01 -50.15 15.66 -128.00 -2.00 -52.16 16 16 O -1.00 -41.68 15.66 -128.00 -2.00 -43.68 16 17 N -0.99 -27.33 2.84 -515.81 -1.47 -28.80 16 18 C 0.11 2.71 5.68 86.38 0.49 3.20 16 19 C -0.15 -3.32 6.26 30.59 0.19 -3.13 16 20 C -0.15 -2.84 9.91 71.98 0.71 -2.13 16 21 C 0.15 3.11 5.13 86.38 0.44 3.56 16 22 C -0.19 -3.78 6.01 -10.79 -0.06 -3.85 16 23 C -0.19 -4.17 10.18 30.59 0.31 -3.86 16 24 C -0.15 -2.14 10.25 30.59 0.31 -1.83 16 25 H 0.12 2.01 8.06 -2.91 -0.02 1.98 16 26 H 0.09 2.17 7.84 -2.91 -0.02 2.15 16 27 H 0.13 2.58 6.70 -2.91 -0.02 2.56 16 28 H 0.07 2.74 7.76 -2.39 -0.02 2.72 16 29 H 0.09 2.92 6.91 -2.39 -0.02 2.91 16 30 H 0.05 2.14 7.17 -2.39 -0.02 2.12 16 31 H 0.03 1.48 5.77 -2.39 -0.01 1.47 16 32 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.11 1.93 8.11 -2.39 -0.02 1.91 16 34 H 0.07 1.96 6.91 -2.39 -0.02 1.95 16 35 H 0.04 1.26 6.09 -2.39 -0.01 1.24 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 1.56 8.11 -2.38 -0.02 1.54 16 41 H 0.08 1.66 6.53 -2.39 -0.02 1.65 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.09 2.08 8.03 -2.39 -0.02 2.07 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -77.76 383.27 0.94 -76.82 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.88 Total: 22.61 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 5.16 Total: -28.80 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -2.64 Total: -130.71 kcal Atomic # 8 Polarization: -91.83 SS G_CDS: -4.01 Total: -95.84 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 16 Polarization: 111.30 SS G_CDS: -0.34 Total: 110.96 kcal Total: -77.76 0.94 -76.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490079465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.626 kcal (2) G-P(sol) polarization free energy of solvation -77.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds