Wall clock time and date at job start Tue Mar 31 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46834 * 2 1 4 4 N 1.46497 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.36588 * 119.99751 * 264.35396 * 4 3 2 6 6 H 1.07996 * 120.00375 * 142.58518 * 5 4 3 7 7 C 1.39234 * 119.99861 * 322.58556 * 5 4 3 8 8 N 1.31254 * 119.99767 * 338.86803 * 7 5 4 9 9 Si 1.86798 * 119.99758 * 158.86401 * 7 5 4 10 10 H 1.48501 * 109.47016 * 60.00486 * 9 7 5 11 11 H 1.48500 * 109.46877 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47563 * 300.00023 * 9 7 5 13 13 C 1.34772 * 120.00538 * 84.35270 * 4 3 2 14 14 O 1.21746 * 120.00023 * 180.02562 * 13 4 3 15 15 C 1.46358 * 119.99878 * 0.27510 * 13 4 3 16 16 C 1.34960 * 120.00237 * 172.61555 * 15 13 4 17 17 C 1.47145 * 119.99446 * 348.67236 * 16 15 13 18 18 C 1.39952 * 120.03070 * 316.50595 * 17 16 15 19 19 C 1.37603 * 119.96945 * 179.78572 * 18 17 16 20 20 C 1.39721 * 120.03058 * 0.47472 * 19 18 17 21 21 C 1.47819 * 119.97328 * 179.76470 * 20 19 18 22 22 O 1.21563 * 119.99653 * 180.02562 * 21 20 19 23 23 N 1.34775 * 120.00256 * 0.02562 * 21 20 19 24 24 C 1.46494 * 119.99884 * 180.02562 * 23 21 20 25 25 C 1.39723 * 120.05350 * 359.78101 * 20 19 18 26 26 C 1.37603 * 120.02890 * 359.97438 * 25 20 19 27 27 H 1.08995 * 109.47331 * 60.00316 * 1 2 3 28 28 H 1.09002 * 109.46727 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46953 * 299.99903 * 1 2 3 30 30 H 1.08997 * 109.46882 * 239.99882 * 2 1 3 31 31 H 1.08995 * 109.47331 * 119.99684 * 2 1 3 32 32 H 1.08995 * 109.47168 * 59.99817 * 3 2 1 33 33 H 1.09012 * 109.46710 * 299.99934 * 3 2 1 34 34 H 0.97000 * 119.99530 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.00031 * 352.61371 * 15 13 4 36 36 H 1.07993 * 119.99990 * 168.68252 * 16 15 13 37 37 H 1.07994 * 120.01185 * 0.02562 * 18 17 16 38 38 H 1.08003 * 119.98701 * 180.22818 * 19 18 17 39 39 H 0.97003 * 119.99629 * 0.02562 * 23 21 20 40 40 H 1.08999 * 109.47174 * 300.00014 * 24 23 21 41 41 H 1.08997 * 109.47357 * 60.00776 * 24 23 21 42 42 H 1.09005 * 109.46794 * 180.02562 * 24 23 21 43 43 H 1.08001 * 119.98365 * 179.97438 * 25 20 19 44 44 H 1.08002 * 120.01351 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1883 1.5588 1.1763 6 1 5.1017 1.0028 1.3276 7 6 3.7073 2.3941 2.1810 8 7 2.8722 3.3626 1.8854 9 14 4.2505 2.1364 3.9496 10 1 5.7259 2.2792 4.0401 11 1 3.6014 3.1499 4.8194 12 1 3.8567 0.7758 4.3952 13 6 4.1784 1.3279 -1.1624 14 8 5.3959 1.3275 -1.1627 15 6 3.4462 1.2094 -2.4240 16 6 4.1128 1.2446 -3.5970 17 6 5.5275 1.6482 -3.6273 18 6 5.9584 2.7479 -2.8764 19 6 7.2825 3.1215 -2.9023 20 6 8.1947 2.4097 -3.6854 21 6 9.6158 2.8154 -3.7163 22 8 10.4098 2.1967 -4.3979 23 7 10.0312 3.8711 -2.9888 24 6 11.4395 4.2734 -3.0199 25 6 7.7648 1.3150 -4.4397 26 6 6.4422 0.9362 -4.4117 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 2.5368 3.9443 2.5854 35 1 2.3724 1.0938 -2.4164 36 1 3.6078 0.9768 -4.5133 37 1 5.2527 3.3005 -2.2740 38 1 7.6160 3.9678 -2.3200 39 1 9.3977 4.3645 -2.4446 40 1 12.0605 3.4500 -2.6673 41 1 11.7217 4.5300 -4.0410 42 1 11.5842 5.1396 -2.3741 43 1 8.4708 0.7659 -5.0450 44 1 6.1102 0.0898 -4.9945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491213485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:43 Heat of formation + Delta-G solvation = -35.160807 kcal Electronic energy + Delta-G solvation = -26146.040469 eV Core-core repulsion = 22449.481630 eV Total energy + Delta-G solvation = -3696.558840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24528 -40.57297 -39.16248 -37.07852 -35.76169 -34.87876 -34.27015 -32.99140 -31.91025 -31.00818 -28.14551 -27.52843 -26.47952 -24.83177 -23.55973 -22.87879 -22.29137 -21.45121 -19.68661 -19.20137 -18.76868 -18.16839 -17.19212 -16.92101 -16.35645 -16.27863 -15.98627 -15.75711 -15.45764 -15.33252 -15.29494 -14.76496 -14.41828 -14.32345 -14.02865 -13.88600 -13.84336 -13.39435 -13.29655 -13.13890 -13.07015 -12.95455 -12.65855 -12.48069 -12.23097 -12.07157 -12.01319 -11.95822 -11.52961 -11.13438 -10.90427 -10.79585 -10.28846 -10.23288 -9.78682 -9.33156 -8.96171 -8.34923 -6.00846 -0.41115 0.57806 0.75322 1.39962 1.40880 1.49404 1.91612 2.22330 2.28271 2.60699 3.00513 3.12775 3.21449 3.71182 3.90476 3.92550 4.05642 4.11435 4.22935 4.37474 4.41101 4.45886 4.54596 4.58219 4.60899 4.68544 4.78338 4.86977 4.92948 4.99588 5.10672 5.15906 5.18671 5.30660 5.31455 5.36353 5.41532 5.42047 5.48108 5.52967 5.62461 5.77269 6.02692 6.24361 6.42216 6.60074 7.10824 7.23637 7.52114 8.17244 8.66407 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.003875 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.687551 B = 7224.069990 C = 8905.263289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.105 3.895 4 N -0.441 5.441 5 C -0.337 4.337 6 H 0.060 0.940 7 C 0.011 3.989 8 N -0.880 5.880 9 Si 0.972 3.028 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.267 1.267 13 C 0.459 3.541 14 O -0.606 6.606 15 C -0.186 4.186 16 C -0.060 4.060 17 C -0.033 4.033 18 C -0.052 4.052 19 C -0.102 4.102 20 C -0.154 4.154 21 C 0.558 3.442 22 O -0.580 6.580 23 N -0.725 5.725 24 C 0.084 3.916 25 C -0.083 4.083 26 C -0.116 4.116 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.274 0.726 35 H 0.151 0.849 36 H 0.178 0.822 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.413 0.587 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.111 0.889 43 H 0.135 0.865 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 0.705 -8.941 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.018 4.018 4 N -0.157 5.157 5 C -0.466 4.466 6 H 0.078 0.922 7 C -0.193 4.193 8 N -0.517 5.517 9 Si 0.796 3.204 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.192 1.192 13 C 0.251 3.749 14 O -0.494 6.494 15 C -0.207 4.207 16 C -0.080 4.080 17 C -0.034 4.034 18 C -0.071 4.071 19 C -0.120 4.120 20 C -0.157 4.157 21 C 0.348 3.652 22 O -0.462 6.462 23 N -0.376 5.376 24 C -0.059 4.059 25 C -0.102 4.102 26 C -0.134 4.134 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.195 0.805 37 H 0.116 0.884 38 H 0.151 0.849 39 H 0.250 0.750 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.153 0.847 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.751 0.485 -9.227 9.270 hybrid contribution 0.050 0.272 1.661 1.683 sum 0.801 0.756 -7.567 7.646 Atomic orbital electron populations 1.21639 0.93308 1.02367 1.02241 1.21901 0.97398 0.96595 1.01198 1.21702 0.80353 0.96532 1.03231 1.43622 1.05886 1.61295 1.04910 1.19215 1.09341 1.25593 0.92439 0.92212 1.26001 0.96982 0.92883 1.03395 1.69918 1.32453 1.14434 1.34901 0.85329 0.78369 0.78567 0.78134 1.20433 1.19559 1.19215 1.19117 0.87812 0.82643 0.85347 1.90677 1.14959 1.56677 1.87041 1.23400 1.00897 1.04416 0.91964 1.22636 0.91757 0.95048 0.98510 1.19373 0.94698 0.94368 0.94912 1.20993 0.95757 0.96274 0.94077 1.21113 0.92960 0.99945 0.98019 1.19906 0.92521 1.00132 1.03137 1.18502 0.87881 0.80049 0.78817 1.90693 1.56509 1.55374 1.43656 1.45768 1.12514 1.31502 1.47827 1.21740 0.79927 1.01235 1.03029 1.21153 0.96245 0.95136 0.97700 1.21393 0.92150 1.00221 0.99604 0.91270 0.91303 0.93292 0.92036 0.94043 0.89942 0.91584 0.91606 0.83187 0.80483 0.88413 0.84854 0.75010 0.93036 0.92270 0.87021 0.84741 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.74 16 2 C -0.13 -4.42 6.06 30.60 0.19 -4.23 16 3 C 0.11 4.29 4.55 86.38 0.39 4.68 16 4 N -0.44 -21.61 2.52 -640.45 -1.61 -23.23 16 5 C -0.34 -18.52 8.89 84.19 0.75 -17.77 16 6 H 0.06 3.56 7.76 -2.91 -0.02 3.54 16 7 C 0.01 0.58 4.91 85.02 0.42 1.00 16 8 N -0.88 -45.63 11.52 21.71 0.25 -45.38 16 9 Si 0.97 41.31 29.60 68.60 2.03 43.34 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 13 C 0.46 21.45 6.53 86.36 0.56 22.01 16 14 O -0.61 -32.04 12.06 -4.49 -0.05 -32.10 16 15 C -0.19 -6.41 8.61 23.63 0.20 -6.20 16 16 C -0.06 -1.73 9.80 23.86 0.23 -1.50 16 17 C -0.03 -1.12 4.54 -20.11 -0.09 -1.21 16 18 C -0.05 -1.99 6.59 22.54 0.15 -1.84 16 19 C -0.10 -3.48 9.52 22.48 0.21 -3.26 16 20 C -0.15 -5.21 5.88 -20.02 -0.12 -5.32 16 21 C 0.56 18.39 7.77 86.78 0.67 19.06 16 22 O -0.58 -22.26 16.33 -3.91 -0.06 -22.32 16 23 N -0.72 -18.17 5.66 -487.51 -2.76 -20.93 16 24 C 0.08 1.62 10.70 127.77 1.37 2.99 16 25 C -0.08 -2.70 9.57 22.48 0.22 -2.48 16 26 C -0.12 -3.48 9.77 22.54 0.22 -3.26 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.93 7.40 -2.39 -0.02 1.91 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 3.79 5.57 -2.39 -0.01 3.78 16 33 H 0.07 2.41 6.53 -2.38 -0.02 2.40 16 34 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 35 H 0.15 4.24 6.02 -2.91 -0.02 4.22 16 36 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.10 4.14 7.01 -2.91 -0.02 4.12 16 38 H 0.13 3.88 6.38 -2.91 -0.02 3.86 16 39 H 0.41 8.71 6.84 -92.71 -0.63 8.08 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.13 4.09 7.63 -2.91 -0.02 4.06 16 44 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -72.31 365.21 4.26 -68.05 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.39 Total: 32.66 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.09 Total: -0.09 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -4.12 Total: -89.54 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -0.12 Total: -54.42 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -72.31 4.26 -68.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491213485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.888 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds