Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 N 1.46502 * 109.47567 * 120.00319 * 2 1 3 5 5 C 1.46495 * 119.99865 * 124.56700 * 4 2 1 6 6 C 1.50702 * 109.47304 * 270.00199 * 5 4 2 7 7 H 1.08002 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00125 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99731 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00059 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47309 * 59.99390 * 10 8 6 12 12 H 1.48494 * 109.47241 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47181 * 299.99680 * 10 8 6 14 14 C 1.34772 * 119.99608 * 304.57279 * 4 2 1 15 15 O 1.21668 * 120.00361 * 354.53850 * 14 4 2 16 16 C 1.46620 * 119.99674 * 174.54444 * 14 4 2 17 17 C 1.34731 * 119.99836 * 184.97417 * 16 14 4 18 18 C 1.47261 * 119.99996 * 179.97438 * 17 16 14 19 19 C 1.39887 * 120.02287 * 359.72889 * 18 17 16 20 20 C 1.37651 * 119.97282 * 179.73672 * 19 18 17 21 21 C 1.39681 * 120.02685 * 0.51454 * 20 19 18 22 22 C 1.47870 * 119.97898 * 179.73766 * 21 20 19 23 23 N 1.34775 * 119.99950 * 0.02562 * 22 21 20 24 24 O 1.21545 * 120.00399 * 180.02562 * 22 21 20 25 25 C 1.39685 * 120.04566 * 359.75891 * 21 20 19 26 26 C 1.37647 * 120.02346 * 359.97438 * 25 21 20 27 27 H 1.09002 * 109.46653 * 295.13746 * 1 2 3 28 28 H 1.08999 * 109.47333 * 55.13913 * 1 2 3 29 29 H 1.08996 * 109.47193 * 175.14304 * 1 2 3 30 30 H 1.09005 * 109.46981 * 240.00313 * 2 1 3 31 31 H 1.09002 * 109.47090 * 184.94593 * 3 2 1 32 32 H 1.08998 * 109.46831 * 304.94697 * 3 2 1 33 33 H 1.09001 * 109.46689 * 64.94623 * 3 2 1 34 34 H 1.08999 * 109.47606 * 30.00510 * 5 4 2 35 35 H 1.09005 * 109.47307 * 150.00487 * 5 4 2 36 36 H 0.96996 * 119.99663 * 180.02562 * 9 8 6 37 37 H 1.07995 * 119.99874 * 4.97719 * 16 14 4 38 38 H 1.07996 * 120.00078 * 359.97438 * 17 16 14 39 39 H 1.07998 * 120.01666 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.98743 * 180.22948 * 20 19 18 41 41 H 0.97001 * 119.99946 * 359.97438 * 23 22 21 42 42 H 0.97004 * 120.00525 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.98385 * 179.97438 * 25 21 20 44 44 H 1.08008 * 120.00967 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9413 -1.8207 1.0639 6 6 2.1547 -3.1014 0.9532 7 1 1.0753 -3.0761 0.9792 8 6 2.8131 -4.3055 0.8197 9 7 4.1275 -4.3363 0.7886 10 14 1.8381 -5.8928 0.6818 11 1 0.9578 -5.8309 -0.5126 12 1 2.7735 -7.0383 0.5479 13 1 1.0077 -6.0711 1.9000 14 6 1.6186 -0.2864 2.4180 15 8 0.9326 0.7116 2.5345 16 6 2.0106 -1.0494 3.6072 17 6 1.5296 -0.7046 4.8175 18 6 1.9227 -1.4712 6.0118 19 6 2.7911 -2.5611 5.8893 20 6 3.1622 -3.2736 7.0071 21 6 2.6636 -2.9155 8.2617 22 6 3.0584 -3.6853 9.4610 23 7 3.8995 -4.7318 9.3432 24 8 2.6244 -3.3743 10.5529 25 6 1.7919 -1.8309 8.3844 26 6 1.4238 -1.1136 7.2687 27 1 -0.3633 0.4366 0.9304 28 1 -0.3634 0.5874 -0.8432 29 1 -0.3633 -1.0239 -0.0870 30 1 1.8933 -0.5138 -0.8901 31 1 3.1264 1.4438 -0.0886 32 1 1.6061 1.9813 -0.8424 33 1 1.7508 1.9301 0.9310 34 1 3.5502 -1.6898 0.1694 35 1 3.5880 -1.8662 1.9402 36 1 4.5907 -5.1833 0.6943 37 1 2.6848 -1.8877 3.5128 38 1 0.8557 0.1340 4.9119 39 1 3.1733 -2.8410 4.9188 40 1 3.8355 -4.1128 6.9133 41 1 4.2456 -4.9802 8.4718 42 1 4.1588 -5.2366 10.1299 43 1 1.4067 -1.5552 9.3548 44 1 0.7501 -0.2748 7.3638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492073929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = -39.050660 kcal Electronic energy + Delta-G solvation = -25711.997369 eV Core-core repulsion = 22015.269853 eV Total energy + Delta-G solvation = -3696.727516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17458 -39.46505 -38.33015 -35.55297 -34.23531 -33.76033 -33.03308 -31.59019 -31.00336 -29.45021 -27.06279 -26.67175 -25.02098 -23.10113 -22.72680 -22.38092 -20.92261 -19.73586 -18.38702 -17.87800 -16.94499 -16.69636 -16.44282 -15.73244 -15.14352 -15.08373 -14.87697 -14.57867 -14.49234 -14.19604 -13.94005 -13.38040 -13.34480 -13.08117 -12.88951 -12.72220 -12.39035 -12.11835 -11.80861 -11.70367 -11.49752 -11.43312 -11.03906 -10.94787 -10.89261 -10.76636 -10.41422 -10.22704 -10.13951 -10.10216 -9.91745 -9.80000 -9.06728 -8.95750 -8.62631 -8.18869 -7.72355 -6.26005 -4.33704 0.38947 1.35465 1.92309 2.90011 3.18355 3.23554 3.26984 3.33169 3.74470 3.85443 4.09549 4.26719 4.62562 4.69156 4.88011 4.89596 5.06917 5.25869 5.30375 5.40786 5.55977 5.65011 5.66565 5.73041 5.85937 6.01089 6.08002 6.15359 6.18689 6.24736 6.28461 6.31475 6.40474 6.55818 6.59959 6.72133 6.75743 6.78318 6.81473 6.88718 7.10878 7.12433 7.53517 7.69277 7.97102 8.05737 8.28493 8.72510 8.94925 9.34567 10.80110 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.003847 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.692107 B = 7276.101696 C = 9267.746385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.583 5.583 5 C 0.236 3.764 6 C -0.537 4.537 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.543 3.457 15 O -0.570 6.570 16 C -0.151 4.151 17 C -0.078 4.078 18 C -0.021 4.021 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.149 4.149 22 C 0.566 3.434 23 N -0.852 5.852 24 O -0.547 6.547 25 C -0.061 4.061 26 C -0.116 4.116 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.403 0.597 42 H 0.403 0.597 43 H 0.135 0.865 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 2.368 8.548 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 C -0.224 4.224 4 N -0.312 5.312 5 C 0.116 3.884 6 C -0.576 4.576 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.334 3.666 15 O -0.453 6.453 16 C -0.171 4.171 17 C -0.098 4.098 18 C -0.022 4.022 19 C -0.132 4.132 20 C -0.101 4.101 21 C -0.152 4.152 22 C 0.353 3.647 23 N -0.416 5.416 24 O -0.425 6.425 25 C -0.079 4.079 26 C -0.134 4.134 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.233 0.767 42 H 0.234 0.766 43 H 0.153 0.847 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.452 3.058 9.139 9.648 hybrid contribution -0.019 -1.643 -0.448 1.703 sum -0.470 1.416 8.691 8.818 Atomic orbital electron populations 1.22173 0.95627 1.01859 1.02848 1.20851 0.94234 0.92353 0.88154 1.22205 1.00512 0.96819 1.02867 1.48230 1.45867 1.32776 1.04364 1.19505 0.88104 0.82372 0.98449 1.21487 0.93678 0.90950 1.51439 0.92049 1.24923 0.94866 0.99120 0.94751 1.69914 1.06795 1.26901 1.49351 0.86613 0.79830 0.82428 0.78994 1.20102 1.21125 1.20028 1.18224 0.80135 0.84204 0.84063 1.90635 1.40732 1.26961 1.87013 1.23555 1.00827 1.00336 0.92421 1.22192 0.98710 0.98245 0.90685 1.19324 0.95153 0.94403 0.93306 1.21564 0.97316 0.94732 0.99541 1.21196 0.98401 0.98964 0.91506 1.19892 1.02949 0.99441 0.92935 1.18349 0.77850 0.79853 0.88628 1.43781 1.50252 1.33682 1.13900 1.90792 1.55099 1.68545 1.28051 1.21126 0.94658 0.92929 0.99235 1.21316 1.00456 1.00358 0.91284 0.90495 0.92847 0.92671 0.89761 0.93186 0.92642 0.90756 0.94467 0.94425 0.92433 0.83889 0.84923 0.83938 0.85473 0.76725 0.76592 0.84681 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.13 37.16 0.34 -2.53 16 2 C 0.15 2.67 3.27 -67.93 -0.22 2.45 16 3 C -0.17 -2.66 9.24 37.16 0.34 -2.32 16 4 N -0.58 -11.79 2.41 -169.03 -0.41 -12.19 16 5 C 0.24 5.29 4.74 -5.20 -0.02 5.27 16 6 C -0.54 -13.21 9.37 -34.44 -0.32 -13.53 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -23.16 13.29 55.43 0.74 -22.42 16 10 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.54 10.83 6.98 -12.88 -0.09 10.74 16 15 O -0.57 -11.87 12.43 5.22 0.06 -11.81 16 16 C -0.15 -2.70 8.59 -37.44 -0.32 -3.02 16 17 C -0.08 -1.21 9.45 -37.16 -0.35 -1.56 16 18 C -0.02 -0.30 5.87 -105.00 -0.62 -0.91 16 19 C -0.11 -1.53 9.39 -39.18 -0.37 -1.90 16 20 C -0.08 -0.95 9.52 -39.26 -0.37 -1.32 16 21 C -0.15 -1.84 5.88 -104.88 -0.62 -2.45 16 22 C 0.57 6.98 8.04 -12.32 -0.10 6.88 16 23 N -0.85 -7.00 8.82 30.53 0.27 -6.73 16 24 O -0.55 -8.61 17.17 5.33 0.09 -8.52 16 25 C -0.06 -0.75 9.57 -39.26 -0.38 -1.12 16 26 C -0.12 -1.42 9.77 -39.18 -0.38 -1.80 16 27 H 0.08 1.44 5.89 -51.93 -0.31 1.13 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.51 7.83 -51.93 -0.41 1.11 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.31 6.22 -51.93 -0.32 0.99 16 34 H 0.04 0.88 7.96 -51.93 -0.41 0.47 16 35 H 0.04 0.86 6.28 -51.93 -0.33 0.53 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.14 2.62 4.30 -52.49 -0.23 2.39 16 38 H 0.13 1.99 7.53 -52.49 -0.40 1.60 16 39 H 0.14 2.01 6.15 -52.49 -0.32 1.68 16 40 H 0.13 1.09 6.38 -52.49 -0.34 0.76 16 41 H 0.40 2.41 6.85 -40.82 -0.28 2.13 16 42 H 0.40 2.67 8.93 -40.82 -0.36 2.31 16 43 H 0.14 1.57 7.63 -52.49 -0.40 1.17 16 44 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -29.92 367.96 -8.06 -37.98 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.76 Total: 9.04 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.58 Total: -5.56 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.60 Total: -41.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.16 Total: -20.32 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.92 -8.06 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492073929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.072 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds