Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 N 1.46502 * 109.47567 * 120.00319 * 2 1 3 5 5 C 1.46495 * 119.99865 * 124.56700 * 4 2 1 6 6 C 1.50702 * 109.47304 * 270.00199 * 5 4 2 7 7 H 1.08002 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00125 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99731 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00059 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47309 * 59.99390 * 10 8 6 12 12 H 1.48494 * 109.47241 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47181 * 299.99680 * 10 8 6 14 14 C 1.34772 * 119.99608 * 304.57279 * 4 2 1 15 15 O 1.21668 * 120.00361 * 354.53850 * 14 4 2 16 16 C 1.46620 * 119.99674 * 174.54444 * 14 4 2 17 17 C 1.34731 * 119.99836 * 184.97417 * 16 14 4 18 18 C 1.47261 * 119.99996 * 179.97438 * 17 16 14 19 19 C 1.39887 * 120.02287 * 359.72889 * 18 17 16 20 20 C 1.37651 * 119.97282 * 179.73672 * 19 18 17 21 21 C 1.39681 * 120.02685 * 0.51454 * 20 19 18 22 22 C 1.47870 * 119.97898 * 179.73766 * 21 20 19 23 23 N 1.34775 * 119.99950 * 0.02562 * 22 21 20 24 24 O 1.21545 * 120.00399 * 180.02562 * 22 21 20 25 25 C 1.39685 * 120.04566 * 359.75891 * 21 20 19 26 26 C 1.37647 * 120.02346 * 359.97438 * 25 21 20 27 27 H 1.09002 * 109.46653 * 295.13746 * 1 2 3 28 28 H 1.08999 * 109.47333 * 55.13913 * 1 2 3 29 29 H 1.08996 * 109.47193 * 175.14304 * 1 2 3 30 30 H 1.09005 * 109.46981 * 240.00313 * 2 1 3 31 31 H 1.09002 * 109.47090 * 184.94593 * 3 2 1 32 32 H 1.08998 * 109.46831 * 304.94697 * 3 2 1 33 33 H 1.09001 * 109.46689 * 64.94623 * 3 2 1 34 34 H 1.08999 * 109.47606 * 30.00510 * 5 4 2 35 35 H 1.09005 * 109.47307 * 150.00487 * 5 4 2 36 36 H 0.96996 * 119.99663 * 180.02562 * 9 8 6 37 37 H 1.07995 * 119.99874 * 4.97719 * 16 14 4 38 38 H 1.07996 * 120.00078 * 359.97438 * 17 16 14 39 39 H 1.07998 * 120.01666 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.98743 * 180.22948 * 20 19 18 41 41 H 0.97001 * 119.99946 * 359.97438 * 23 22 21 42 42 H 0.97004 * 120.00525 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.98385 * 179.97438 * 25 21 20 44 44 H 1.08008 * 120.00967 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9413 -1.8207 1.0639 6 6 2.1547 -3.1014 0.9532 7 1 1.0753 -3.0761 0.9792 8 6 2.8131 -4.3055 0.8197 9 7 4.1275 -4.3363 0.7886 10 14 1.8381 -5.8928 0.6818 11 1 0.9578 -5.8309 -0.5126 12 1 2.7735 -7.0383 0.5479 13 1 1.0077 -6.0711 1.9000 14 6 1.6186 -0.2864 2.4180 15 8 0.9326 0.7116 2.5345 16 6 2.0106 -1.0494 3.6072 17 6 1.5296 -0.7046 4.8175 18 6 1.9227 -1.4712 6.0118 19 6 2.7911 -2.5611 5.8893 20 6 3.1622 -3.2736 7.0071 21 6 2.6636 -2.9155 8.2617 22 6 3.0584 -3.6853 9.4610 23 7 3.8995 -4.7318 9.3432 24 8 2.6244 -3.3743 10.5529 25 6 1.7919 -1.8309 8.3844 26 6 1.4238 -1.1136 7.2687 27 1 -0.3633 0.4366 0.9304 28 1 -0.3634 0.5874 -0.8432 29 1 -0.3633 -1.0239 -0.0870 30 1 1.8933 -0.5138 -0.8901 31 1 3.1264 1.4438 -0.0886 32 1 1.6061 1.9813 -0.8424 33 1 1.7508 1.9301 0.9310 34 1 3.5502 -1.6898 0.1694 35 1 3.5880 -1.8662 1.9402 36 1 4.5907 -5.1833 0.6943 37 1 2.6848 -1.8877 3.5128 38 1 0.8557 0.1340 4.9119 39 1 3.1733 -2.8410 4.9188 40 1 3.8355 -4.1128 6.9133 41 1 4.2456 -4.9802 8.4718 42 1 4.1588 -5.2366 10.1299 43 1 1.4067 -1.5552 9.3548 44 1 0.7501 -0.2748 7.3638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492073929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = -56.729856 kcal Electronic energy + Delta-G solvation = -25712.763996 eV Core-core repulsion = 22015.269853 eV Total energy + Delta-G solvation = -3697.494144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21930 -40.92150 -39.37669 -37.09481 -35.47384 -34.98182 -34.51017 -33.14196 -31.98633 -30.62841 -28.87158 -28.01920 -26.22253 -24.81138 -23.74647 -23.72472 -22.03186 -20.92728 -19.42041 -19.19468 -18.57385 -17.98921 -17.80288 -17.14992 -16.48200 -16.17204 -16.06023 -15.87087 -15.78141 -15.67742 -15.13974 -14.56940 -14.53054 -14.39489 -14.27740 -14.01298 -13.84116 -13.67438 -13.26189 -13.12125 -12.81814 -12.78586 -12.70276 -12.63616 -12.19841 -12.10743 -11.97237 -11.69987 -11.62322 -11.31824 -11.25491 -10.75567 -10.62885 -10.41707 -10.04440 -9.51362 -9.21272 -8.17371 -6.31595 -0.72573 0.37158 0.71214 1.43115 1.45188 1.51848 1.84531 2.27402 2.46509 2.49072 2.50401 2.92382 3.12389 3.52778 3.72102 3.80889 3.94123 4.02709 4.22913 4.28215 4.29766 4.35142 4.41023 4.45205 4.71026 4.73787 4.81617 4.95102 4.97836 5.01111 5.04680 5.09765 5.17828 5.21690 5.24036 5.31505 5.42992 5.47034 5.64248 5.71235 5.78892 5.85937 5.97927 6.08233 6.34841 6.60642 6.85688 7.22713 7.33999 7.44550 8.87429 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.003847 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.692107 B = 7276.101696 C = 9267.746385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 C -0.155 4.155 4 N -0.590 5.590 5 C 0.252 3.748 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.029 3.971 9 N -0.916 5.916 10 Si 0.948 3.052 11 H -0.277 1.277 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.541 3.459 15 O -0.584 6.584 16 C -0.189 4.189 17 C -0.042 4.042 18 C -0.044 4.044 19 C -0.122 4.122 20 C -0.077 4.077 21 C -0.148 4.148 22 C 0.564 3.436 23 N -0.830 5.830 24 O -0.585 6.585 25 C -0.069 4.069 26 C -0.105 4.105 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.031 0.969 36 H 0.268 0.732 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.416 0.584 42 H 0.414 0.586 43 H 0.142 0.858 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 1.811 9.263 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 C -0.213 4.213 4 N -0.319 5.319 5 C 0.131 3.869 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.172 4.172 9 N -0.555 5.555 10 Si 0.774 3.226 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.197 1.197 14 C 0.332 3.668 15 O -0.468 6.468 16 C -0.209 4.209 17 C -0.062 4.062 18 C -0.045 4.045 19 C -0.140 4.140 20 C -0.095 4.095 21 C -0.151 4.151 22 C 0.351 3.649 23 N -0.394 5.394 24 O -0.467 6.467 25 C -0.087 4.087 26 C -0.122 4.122 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.175 0.825 41 H 0.248 0.752 42 H 0.247 0.753 43 H 0.160 0.840 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.694 2.481 9.833 10.165 hybrid contribution 0.081 -1.478 -0.555 1.581 sum -0.613 1.003 9.278 9.352 Atomic orbital electron populations 1.22084 0.94869 1.01336 1.03256 1.21095 0.94907 0.93368 0.87327 1.22098 1.00639 0.95386 1.03135 1.48229 1.45855 1.32468 1.05384 1.19143 0.88018 0.82618 0.97152 1.21610 0.93203 0.92055 1.51222 0.93178 1.25526 0.95587 1.01609 0.94475 1.69993 1.07863 1.27609 1.50082 0.85756 0.78649 0.79382 0.78793 1.20209 1.20539 1.19702 1.18506 0.79716 0.84112 0.84418 1.90613 1.41465 1.27531 1.87233 1.23321 1.03463 1.01492 0.92649 1.22340 0.96279 0.97122 0.90452 1.19332 0.96674 0.95179 0.93295 1.21603 0.97495 0.95073 0.99782 1.21424 0.98300 0.99348 0.90437 1.20073 1.02509 0.99279 0.93240 1.18374 0.78155 0.80474 0.87896 1.43623 1.48465 1.32148 1.15214 1.90781 1.56841 1.69841 1.29213 1.21307 0.94792 0.93076 0.99564 1.21508 0.99876 1.00526 0.90333 0.92100 0.89819 0.94073 0.89972 0.93131 0.89800 0.92440 0.96162 0.95126 0.92268 0.84844 0.84364 0.85028 0.82478 0.75165 0.75349 0.84012 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.13 71.98 0.66 -4.69 16 2 C 0.14 4.91 3.27 44.99 0.15 5.06 16 3 C -0.15 -4.84 9.24 71.98 0.67 -4.17 16 4 N -0.59 -24.42 2.41 -806.91 -1.94 -26.36 16 5 C 0.25 11.64 4.74 85.63 0.41 12.05 16 6 C -0.54 -27.13 9.37 25.60 0.24 -26.89 16 7 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 8 C 0.03 1.44 5.46 84.66 0.46 1.91 16 9 N -0.92 -47.86 13.29 21.45 0.28 -47.58 16 10 Si 0.95 40.13 29.54 68.60 2.03 42.16 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 14 C 0.54 22.03 6.98 86.43 0.60 22.63 16 15 O -0.58 -24.56 12.43 -4.25 -0.05 -24.62 16 16 C -0.19 -6.90 8.59 23.65 0.20 -6.70 16 17 C -0.04 -1.29 9.45 23.84 0.23 -1.06 16 18 C -0.04 -1.19 5.87 -20.11 -0.12 -1.31 16 19 C -0.12 -3.19 9.39 22.53 0.21 -2.98 16 20 C -0.08 -1.63 9.52 22.48 0.21 -1.41 16 21 C -0.15 -3.36 5.88 -20.03 -0.12 -3.48 16 22 C 0.56 12.84 8.04 86.79 0.70 13.53 16 23 N -0.83 -11.48 8.82 -175.59 -1.55 -13.03 16 24 O -0.59 -17.72 17.17 -3.86 -0.07 -17.78 16 25 C -0.07 -1.58 9.57 22.48 0.22 -1.36 16 26 C -0.10 -2.37 9.77 22.53 0.22 -2.15 16 27 H 0.06 2.27 5.89 -2.39 -0.01 2.25 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.96 7.83 -2.38 -0.02 2.95 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.06 2.01 6.22 -2.39 -0.01 1.99 16 34 H 0.02 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.03 1.46 6.28 -2.38 -0.01 1.44 16 36 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 37 H 0.13 5.10 4.30 -2.91 -0.01 5.09 16 38 H 0.14 4.05 7.53 -2.91 -0.02 4.03 16 39 H 0.13 3.76 6.15 -2.91 -0.02 3.74 16 40 H 0.16 2.26 6.38 -2.91 -0.02 2.24 16 41 H 0.42 3.67 6.85 -92.71 -0.63 3.04 16 42 H 0.41 4.43 8.93 -92.71 -0.83 3.61 16 43 H 0.14 3.09 7.63 -2.91 -0.02 3.06 16 44 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.28 367.96 3.22 -61.06 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -0.41 Total: 27.18 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.93 Total: -1.03 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -3.21 Total: -86.97 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.12 Total: -42.40 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -64.28 3.22 -61.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492073929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.329 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds