Wall clock time and date at job start Tue Mar 31 2020 11:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 H 1.09001 * 109.47355 * 304.99699 * 3 2 1 5 5 C 1.50699 * 109.47228 * 184.99385 * 3 2 1 6 6 H 1.07995 * 120.00657 * 240.00081 * 5 3 2 7 7 C 1.37886 * 119.99630 * 59.72790 * 5 3 2 8 8 N 1.31512 * 120.00042 * 0.27233 * 7 5 3 9 9 Si 1.86796 * 119.99840 * 180.27658 * 7 5 3 10 10 H 1.48502 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47364 * 119.99901 * 9 7 5 12 12 H 1.48501 * 109.47108 * 239.99698 * 9 7 5 13 13 N 1.46498 * 109.47066 * 65.00026 * 3 2 1 14 14 C 1.34782 * 119.99771 * 275.00047 * 13 3 2 15 15 O 1.21721 * 119.99845 * 359.97438 * 14 13 3 16 16 C 1.46257 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.34992 * 119.99974 * 173.23483 * 16 14 13 18 18 C 1.46985 * 119.99807 * 348.68634 * 17 16 14 19 19 C 1.39986 * 120.09993 * 316.38183 * 18 17 16 20 20 C 1.37625 * 119.90347 * 179.81338 * 19 18 17 21 21 C 1.39166 * 120.09427 * 0.44550 * 20 19 18 22 22 N 1.39489 * 119.89701 * 179.76498 * 21 20 19 23 23 C 1.34781 * 119.99695 * 144.66706 * 22 21 20 24 24 C 1.50693 * 119.99730 * 184.74799 * 23 22 21 25 25 O 1.21276 * 120.00071 * 4.74353 * 23 22 21 26 26 C 1.39163 * 120.20098 * 359.78672 * 21 20 19 27 27 C 1.37626 * 120.09723 * 0.02562 * 26 21 20 28 28 H 1.08995 * 109.46633 * 60.00290 * 1 2 3 29 29 H 1.08999 * 109.46896 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47328 * 299.99922 * 1 2 3 31 31 H 1.08996 * 109.47676 * 239.99395 * 2 1 3 32 32 H 1.09009 * 109.47199 * 119.99847 * 2 1 3 33 33 H 0.96995 * 120.00239 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00396 * 94.99815 * 13 3 2 35 35 H 1.07998 * 120.00132 * 353.23900 * 16 14 13 36 36 H 1.07997 * 120.00033 * 168.68349 * 17 16 14 37 37 H 1.08007 * 120.04901 * 0.02607 * 19 18 17 38 38 H 1.07993 * 119.95421 * 180.18620 * 20 19 18 39 39 H 0.96994 * 120.00006 * 324.65688 * 22 21 20 40 40 H 1.09005 * 109.47436 * 359.97438 * 24 23 22 41 41 H 1.09001 * 109.47429 * 119.99734 * 24 23 22 42 42 H 1.09001 * 109.47365 * 239.99805 * 24 23 22 43 43 H 1.07991 * 119.95314 * 179.97438 * 26 21 20 44 44 H 1.07999 * 120.04488 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1436 0.8734 -1.2251 8 7 3.4066 0.3320 -2.1703 9 14 6.0055 0.8687 -1.3748 10 1 6.5992 1.5355 -0.1881 11 1 6.4925 -0.5320 -1.4514 12 1 6.4051 1.5996 -2.6042 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3669 15 8 -0.3421 2.6325 0.4306 16 6 0.0483 3.3187 2.6164 17 6 -1.1127 4.0038 2.6884 18 6 -1.8652 4.3053 1.4623 19 6 -1.1942 4.7579 0.3201 20 6 -1.9023 5.0354 -0.8269 21 6 -3.2846 4.8755 -0.8495 22 7 -3.9988 5.1627 -2.0127 23 6 -5.0773 4.4240 -2.3409 24 6 -5.7850 4.6640 -3.6495 25 8 -5.4781 3.5662 -1.5831 26 6 -3.9564 4.4306 0.2851 27 6 -3.2559 4.1470 1.4353 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.8298 -0.0700 -2.9449 34 1 2.2718 2.1231 1.9978 35 1 0.6915 3.2539 3.4815 36 1 -1.4886 4.3302 3.6467 37 1 -0.1218 4.8858 0.3379 38 1 -1.3851 5.3816 -1.7094 39 1 -3.7193 5.8940 -2.5853 40 1 -5.2850 5.4671 -4.1911 41 1 -5.7622 3.7530 -4.2474 42 1 -6.8201 4.9460 -3.4564 43 1 -5.0292 4.3084 0.2633 44 1 -3.7781 3.8013 2.3151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492583409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:18 Heat of formation + Delta-G solvation = -22.942550 kcal Electronic energy + Delta-G solvation = -26252.000642 eV Core-core repulsion = 22555.971626 eV Total energy + Delta-G solvation = -3696.029016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44038 -39.33190 -37.98428 -35.45671 -34.65221 -32.85714 -32.32887 -30.93566 -30.65225 -30.31477 -28.01871 -26.83519 -23.92743 -22.97839 -22.36800 -21.53880 -20.46454 -19.46075 -19.00294 -17.76540 -17.17132 -16.94676 -16.04026 -15.61080 -15.36064 -14.70902 -14.62765 -14.47760 -14.12709 -13.84728 -13.54871 -13.41857 -13.10418 -12.96280 -12.73813 -12.61753 -12.50864 -12.19618 -11.92962 -11.45985 -11.38745 -11.22588 -10.99757 -10.92860 -10.81962 -10.42021 -10.25787 -10.12255 -9.90361 -9.59200 -9.15767 -9.01788 -8.98482 -8.49322 -8.44519 -7.68122 -7.41608 -6.11268 -4.20520 1.00525 1.82961 2.06852 2.59493 3.08100 3.23187 3.31284 3.33797 4.07409 4.16312 4.22415 4.46091 4.59042 4.89510 5.02410 5.13545 5.16422 5.19948 5.32105 5.42530 5.53149 5.64236 5.69050 5.79490 5.90118 6.25949 6.32105 6.42993 6.45734 6.53248 6.58924 6.60576 6.73535 6.78471 6.96152 7.10707 7.27038 7.31054 7.37115 7.43098 7.52413 7.65395 7.79139 7.93868 8.05468 8.21531 8.73950 8.81814 9.23034 9.47636 10.93848 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.003417 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.567433 B = 8192.955375 C = 9106.189738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.520 3.480 15 O -0.533 6.533 16 C -0.200 4.200 17 C -0.045 4.045 18 C -0.073 4.073 19 C -0.009 4.009 20 C -0.153 4.153 21 C 0.142 3.858 22 N -0.671 5.671 23 C 0.507 3.493 24 C -0.169 4.169 25 O -0.526 6.526 26 C -0.136 4.136 27 C -0.088 4.088 28 H 0.048 0.952 29 H 0.020 0.980 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.387 0.613 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.408 0.592 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 11.915 3.437 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.307 3.693 15 O -0.413 6.413 16 C -0.221 4.221 17 C -0.064 4.064 18 C -0.074 4.074 19 C -0.028 4.028 20 C -0.173 4.173 21 C 0.049 3.951 22 N -0.316 5.316 23 C 0.295 3.705 24 C -0.228 4.228 25 O -0.402 6.402 26 C -0.156 4.156 27 C -0.107 4.107 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.219 0.781 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.244 0.756 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.149 0.851 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.702 11.130 3.025 17.910 hybrid contribution 1.648 0.053 -0.067 1.650 sum -12.054 11.183 2.959 16.706 Atomic orbital electron populations 1.21815 0.98183 0.97885 1.01329 1.21925 0.92678 0.99845 1.02099 1.18747 0.94018 0.89170 0.81120 0.93339 1.21288 0.90841 1.38701 1.06312 0.92117 1.24890 0.98510 0.94861 0.95450 1.69909 1.34960 1.37598 1.09445 0.86427 0.85031 0.77764 0.78068 1.19762 1.20906 1.20928 1.46513 1.14435 1.55624 1.18356 1.18308 0.82862 0.80250 0.87880 1.90870 1.50603 1.59774 1.40087 1.23289 0.98347 1.01418 0.99061 1.22212 0.93057 0.94626 0.96550 1.18812 0.92957 1.01521 0.94107 1.20853 0.98630 0.92458 0.90894 1.20649 0.91497 1.06073 0.99091 1.17767 0.90628 1.00878 0.85858 1.43533 1.29340 1.34524 1.24246 1.20964 0.80117 0.80658 0.88736 1.21849 1.01822 1.04682 0.94492 1.90740 1.64462 1.32862 1.52126 1.20923 1.00487 1.02846 0.91332 1.20993 0.92866 0.99095 0.97721 0.93255 0.96120 0.94129 0.88436 0.95213 0.92680 0.78092 0.85680 0.85421 0.86303 0.86214 0.75605 0.90421 0.88340 0.88604 0.85086 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.78 2.24 -69.08 -0.16 6.63 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.73 11.28 55.43 0.63 -24.11 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.70 -14.40 5.02 -56.38 -0.28 -14.68 16 14 C 0.52 10.07 5.34 -13.04 -0.07 10.00 16 15 O -0.53 -11.85 9.31 5.17 0.05 -11.80 16 16 C -0.20 -2.94 9.90 -37.51 -0.37 -3.31 16 17 C -0.04 -0.60 9.80 -37.19 -0.36 -0.96 16 18 C -0.07 -1.14 4.54 -105.04 -0.48 -1.62 16 19 C -0.01 -0.16 6.59 -39.15 -0.26 -0.41 16 20 C -0.15 -2.36 9.94 -39.46 -0.39 -2.75 16 21 C 0.14 2.12 6.30 -83.69 -0.53 1.60 16 22 N -0.67 -7.72 5.31 -9.83 -0.05 -7.77 16 23 C 0.51 6.19 7.78 -10.99 -0.09 6.11 16 24 C -0.17 -1.18 10.39 36.00 0.37 -0.81 16 25 O -0.53 -8.88 14.52 5.56 0.08 -8.80 16 26 C -0.14 -2.13 8.66 -39.46 -0.34 -2.47 16 27 C -0.09 -1.32 9.78 -39.15 -0.38 -1.71 16 28 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.93 5.64 -51.93 -0.29 0.63 16 31 H 0.10 2.67 5.94 -51.93 -0.31 2.37 16 32 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.39 6.94 8.52 -40.82 -0.35 6.60 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.12 2.05 7.02 -52.48 -0.37 1.68 16 38 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.41 3.10 8.66 -40.82 -0.35 2.75 16 40 H 0.08 0.33 7.92 -51.93 -0.41 -0.08 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.13 2.08 6.22 -52.49 -0.33 1.75 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -33.72 361.74 -8.56 -42.28 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.13 Total: 12.34 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.28 Total: -8.45 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.29 Total: -46.56 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.13 Total: -20.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.72 -8.56 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492583409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.340 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds