Wall clock time and date at job start Tue Mar 31 2020 11:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46671 * 2 1 4 4 H 1.08993 * 109.47234 * 55.00519 * 3 2 1 5 5 C 1.50704 * 109.46815 * 175.00057 * 3 2 1 6 6 H 1.08000 * 120.00268 * 119.99777 * 5 3 2 7 7 C 1.37874 * 120.00120 * 300.00189 * 5 3 2 8 8 N 1.31514 * 119.99853 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47018 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47346 * 119.99448 * 9 7 5 12 12 H 1.48504 * 109.47277 * 239.99869 * 9 7 5 13 13 N 1.46494 * 109.47035 * 294.99949 * 3 2 1 14 14 C 1.34781 * 120.00176 * 85.00452 * 13 3 2 15 15 O 1.21663 * 119.99583 * 359.97438 * 14 13 3 16 16 C 1.46609 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.34738 * 119.99665 * 173.41119 * 16 14 13 18 18 C 1.47255 * 120.00228 * 349.35898 * 17 16 14 19 19 C 1.39890 * 120.02508 * 314.05131 * 18 17 16 20 20 C 1.37643 * 119.97418 * 179.74008 * 19 18 17 21 21 C 1.39675 * 120.02678 * 0.52847 * 20 19 18 22 22 C 1.47875 * 119.97771 * 179.69494 * 21 20 19 23 23 O 1.21546 * 119.99963 * 180.02562 * 22 21 20 24 24 N 1.34776 * 120.00043 * 0.03102 * 22 21 20 25 25 C 1.46500 * 120.00484 * 179.97438 * 24 22 21 26 26 C 1.39680 * 120.04937 * 359.72541 * 21 20 19 27 27 C 1.37651 * 120.02142 * 0.02562 * 26 21 20 28 28 H 1.08997 * 109.47140 * 59.99843 * 1 2 3 29 29 H 1.09000 * 109.46645 * 299.99648 * 1 2 3 30 30 H 1.09002 * 109.46333 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47576 * 119.99929 * 2 1 3 32 32 H 1.08999 * 109.47165 * 240.00426 * 2 1 3 33 33 H 0.97006 * 119.99828 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00193 * 264.99973 * 13 3 2 35 35 H 1.08002 * 120.00401 * 353.41339 * 16 14 13 36 36 H 1.08007 * 119.99824 * 169.35561 * 17 16 14 37 37 H 1.08004 * 120.00858 * 359.96522 * 19 18 17 38 38 H 1.08001 * 119.98759 * 180.22535 * 20 19 18 39 39 H 0.97001 * 120.00013 * 359.97438 * 24 22 21 40 40 H 1.08995 * 109.47609 * 180.02562 * 25 24 22 41 41 H 1.09010 * 109.46593 * 299.99516 * 25 24 22 42 42 H 1.08995 * 109.47115 * 59.99027 * 25 24 22 43 43 H 1.07997 * 119.98883 * 179.97438 * 26 21 20 44 44 H 1.08002 * 120.00924 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4445 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3376 2.1732 9 14 6.0049 0.8814 1.3817 10 1 6.5987 1.5465 0.1942 11 1 6.3990 1.6170 2.6101 12 1 6.4971 -0.5173 1.4629 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3421 2.6318 -0.4314 16 6 0.0474 3.3203 -2.6195 17 6 -1.2124 3.7695 -2.7829 18 6 -2.2573 3.4002 -1.8133 19 6 -2.3800 2.0733 -1.3878 20 6 -3.3537 1.7302 -0.4774 21 6 -4.2262 2.7044 0.0132 22 6 -5.2762 2.3334 0.9861 23 8 -6.0360 3.1807 1.4130 24 7 -5.3906 1.0558 1.3997 25 6 -6.4304 0.6882 2.3640 26 6 -4.1081 4.0287 -0.4150 27 6 -3.1318 4.3749 -1.3215 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.8293 -0.0603 2.9502 34 1 2.2718 2.1232 -1.9978 35 1 0.7715 3.4434 -3.4113 36 1 -1.4558 4.4004 -3.6251 37 1 -1.7085 1.3189 -1.7707 38 1 -3.4462 0.7065 -0.1459 39 1 -4.7845 0.3795 1.0589 40 1 -6.3677 -0.3789 2.5771 41 1 -6.2863 1.2515 3.2861 42 1 -7.4106 0.9189 1.9469 43 1 -4.7835 4.7810 -0.0353 44 1 -3.0404 5.3990 -1.6521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492606331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:52 Heat of formation + Delta-G solvation = -24.278399 kcal Electronic energy + Delta-G solvation = -26354.214476 eV Core-core repulsion = 22658.127533 eV Total energy + Delta-G solvation = -3696.086943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16765 -39.35872 -37.93195 -35.26572 -34.71150 -33.51619 -32.42373 -31.17282 -30.86805 -29.73568 -27.31158 -26.73119 -24.23668 -23.03061 -22.43644 -21.84389 -20.51384 -19.51381 -19.10438 -18.23641 -17.24645 -16.30436 -15.92425 -15.48884 -15.21825 -15.06301 -14.74704 -14.60576 -14.36862 -14.04185 -13.73924 -13.26986 -13.20645 -13.09721 -12.77262 -12.68487 -12.40749 -12.19168 -12.05465 -11.57245 -11.46373 -11.30447 -11.01791 -10.98571 -10.87826 -10.33691 -10.19736 -9.95731 -9.80164 -9.61997 -9.23485 -9.17800 -9.07052 -8.71113 -8.53919 -7.92765 -7.80870 -6.16177 -4.25412 0.66501 1.63671 1.77444 3.02225 3.18144 3.20681 3.29050 3.31210 3.93018 4.07275 4.13850 4.37568 4.68254 4.86140 4.91882 5.10921 5.13362 5.15611 5.29765 5.36743 5.45545 5.53726 5.63527 5.69437 5.92260 6.11402 6.16422 6.26471 6.30935 6.31753 6.40880 6.48964 6.54754 6.59292 6.72623 6.97545 7.06282 7.15251 7.31359 7.41488 7.41671 7.58404 7.70197 7.86990 8.14098 8.18662 8.64483 8.74944 9.11523 9.42447 10.89075 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.003481 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.949609 B = 8042.370449 C = 9278.445709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.518 3.482 15 O -0.534 6.534 16 C -0.186 4.186 17 C -0.059 4.059 18 C -0.025 4.025 19 C -0.045 4.045 20 C -0.093 4.093 21 C -0.137 4.137 22 C 0.562 3.438 23 O -0.545 6.545 24 N -0.734 5.734 25 C 0.089 3.911 26 C -0.070 4.070 27 C -0.116 4.116 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.403 0.597 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.130 0.870 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 1.062 -9.017 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.305 3.695 15 O -0.415 6.415 16 C -0.207 4.207 17 C -0.079 4.079 18 C -0.025 4.025 19 C -0.063 4.063 20 C -0.112 4.112 21 C -0.140 4.140 22 C 0.350 3.650 23 O -0.423 6.423 24 N -0.386 5.386 25 C -0.055 4.055 26 C -0.089 4.089 27 C -0.134 4.134 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.238 0.762 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.984 1.500 -7.792 16.078 hybrid contribution 1.906 -0.411 -0.305 1.974 sum -12.078 1.089 -8.097 14.582 Atomic orbital electron populations 1.21945 0.98505 0.97882 1.01315 1.21921 0.92599 0.99809 1.02230 1.18775 0.94176 0.89130 0.81082 0.93249 1.21277 0.90806 1.38916 1.06283 0.92106 1.24879 0.98576 0.94811 0.95389 1.69901 1.35018 1.37691 1.09306 0.86421 0.84931 0.77773 0.78139 1.19760 1.20880 1.20877 1.46519 1.14704 1.55026 1.18438 1.18389 0.83138 0.79794 0.88217 1.90851 1.50494 1.59683 1.40427 1.23403 0.97392 1.01795 0.98097 1.22267 0.92244 0.96176 0.97213 1.19045 0.93950 0.93652 0.95854 1.21081 0.94592 0.95451 0.95181 1.20966 0.94935 0.98245 0.97026 1.19780 0.98401 0.95205 1.00652 1.18445 0.83619 0.82019 0.80888 1.90731 1.44476 1.49350 1.57771 1.45735 1.36203 1.10099 1.46575 1.21528 0.91040 1.00416 0.92551 1.20962 0.97437 0.94871 0.95664 1.21085 0.95172 0.98799 0.98350 0.93900 0.93083 0.96023 0.88359 0.95126 0.92635 0.77992 0.85345 0.84886 0.85810 0.86289 0.76150 0.90609 0.92163 0.92276 0.85220 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.50 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.70 -13.53 5.02 -56.27 -0.28 -13.81 16 14 C 0.52 9.32 5.56 -12.88 -0.07 9.25 16 15 O -0.53 -11.04 9.60 5.22 0.05 -10.99 16 16 C -0.19 -2.46 9.92 -37.45 -0.37 -2.83 16 17 C -0.06 -0.71 9.79 -37.16 -0.36 -1.07 16 18 C -0.02 -0.35 4.46 -105.00 -0.47 -0.81 16 19 C -0.05 -0.67 6.46 -39.18 -0.25 -0.92 16 20 C -0.09 -1.30 9.52 -39.26 -0.37 -1.68 16 21 C -0.14 -2.03 5.88 -104.88 -0.62 -2.65 16 22 C 0.56 8.40 7.77 -12.32 -0.10 8.31 16 23 O -0.54 -9.72 16.33 5.33 0.09 -9.63 16 24 N -0.73 -8.47 5.66 -68.04 -0.39 -8.85 16 25 C 0.09 0.83 10.70 59.85 0.64 1.47 16 26 C -0.07 -1.01 9.57 -39.26 -0.38 -1.39 16 27 C -0.12 -1.55 9.77 -39.18 -0.38 -1.93 16 28 H 0.04 0.80 3.53 -51.93 -0.18 0.62 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.39 6.53 8.52 -40.82 -0.35 6.18 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.87 5.36 -52.48 -0.28 1.59 16 38 H 0.12 1.39 6.38 -52.49 -0.34 1.05 16 39 H 0.40 3.80 6.85 -40.82 -0.28 3.52 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.13 1.79 7.63 -52.49 -0.40 1.39 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -32.10 358.98 -8.49 -40.59 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.86 Total: 11.45 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.11 Total: -5.83 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.04 Total: -46.23 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.14 Total: -20.62 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.10 -8.49 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492606331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.307 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds