Wall clock time and date at job start Tue Mar 31 2020 11:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46671 * 2 1 4 4 H 1.08993 * 109.47234 * 55.00519 * 3 2 1 5 5 C 1.50704 * 109.46815 * 175.00057 * 3 2 1 6 6 H 1.08000 * 120.00268 * 119.99777 * 5 3 2 7 7 C 1.37874 * 120.00120 * 300.00189 * 5 3 2 8 8 N 1.31514 * 119.99853 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47018 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47346 * 119.99448 * 9 7 5 12 12 H 1.48504 * 109.47277 * 239.99869 * 9 7 5 13 13 N 1.46494 * 109.47035 * 294.99949 * 3 2 1 14 14 C 1.34781 * 120.00176 * 85.00452 * 13 3 2 15 15 O 1.21663 * 119.99583 * 359.97438 * 14 13 3 16 16 C 1.46609 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.34738 * 119.99665 * 173.41119 * 16 14 13 18 18 C 1.47255 * 120.00228 * 349.35898 * 17 16 14 19 19 C 1.39890 * 120.02508 * 314.05131 * 18 17 16 20 20 C 1.37643 * 119.97418 * 179.74008 * 19 18 17 21 21 C 1.39675 * 120.02678 * 0.52847 * 20 19 18 22 22 C 1.47875 * 119.97771 * 179.69494 * 21 20 19 23 23 O 1.21546 * 119.99963 * 180.02562 * 22 21 20 24 24 N 1.34776 * 120.00043 * 0.03102 * 22 21 20 25 25 C 1.46500 * 120.00484 * 179.97438 * 24 22 21 26 26 C 1.39680 * 120.04937 * 359.72541 * 21 20 19 27 27 C 1.37651 * 120.02142 * 0.02562 * 26 21 20 28 28 H 1.08997 * 109.47140 * 59.99843 * 1 2 3 29 29 H 1.09000 * 109.46645 * 299.99648 * 1 2 3 30 30 H 1.09002 * 109.46333 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47576 * 119.99929 * 2 1 3 32 32 H 1.08999 * 109.47165 * 240.00426 * 2 1 3 33 33 H 0.97006 * 119.99828 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00193 * 264.99973 * 13 3 2 35 35 H 1.08002 * 120.00401 * 353.41339 * 16 14 13 36 36 H 1.08007 * 119.99824 * 169.35561 * 17 16 14 37 37 H 1.08004 * 120.00858 * 359.96522 * 19 18 17 38 38 H 1.08001 * 119.98759 * 180.22535 * 20 19 18 39 39 H 0.97001 * 120.00013 * 359.97438 * 24 22 21 40 40 H 1.08995 * 109.47609 * 180.02562 * 25 24 22 41 41 H 1.09010 * 109.46593 * 299.99516 * 25 24 22 42 42 H 1.08995 * 109.47115 * 59.99027 * 25 24 22 43 43 H 1.07997 * 119.98883 * 179.97438 * 26 21 20 44 44 H 1.08002 * 120.00924 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4445 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3376 2.1732 9 14 6.0049 0.8814 1.3817 10 1 6.5987 1.5465 0.1942 11 1 6.3990 1.6170 2.6101 12 1 6.4971 -0.5173 1.4629 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3421 2.6318 -0.4314 16 6 0.0474 3.3203 -2.6195 17 6 -1.2124 3.7695 -2.7829 18 6 -2.2573 3.4002 -1.8133 19 6 -2.3800 2.0733 -1.3878 20 6 -3.3537 1.7302 -0.4774 21 6 -4.2262 2.7044 0.0132 22 6 -5.2762 2.3334 0.9861 23 8 -6.0360 3.1807 1.4130 24 7 -5.3906 1.0558 1.3997 25 6 -6.4304 0.6882 2.3640 26 6 -4.1081 4.0287 -0.4150 27 6 -3.1318 4.3749 -1.3215 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.8293 -0.0603 2.9502 34 1 2.2718 2.1232 -1.9978 35 1 0.7715 3.4434 -3.4113 36 1 -1.4558 4.4004 -3.6251 37 1 -1.7085 1.3189 -1.7707 38 1 -3.4462 0.7065 -0.1459 39 1 -4.7845 0.3795 1.0589 40 1 -6.3677 -0.3789 2.5771 41 1 -6.2863 1.2515 3.2861 42 1 -7.4106 0.9189 1.9469 43 1 -4.7835 4.7810 -0.0353 44 1 -3.0404 5.3990 -1.6521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492606331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:51 Heat of formation + Delta-G solvation = -45.782084 kcal Electronic energy + Delta-G solvation = -26355.146946 eV Core-core repulsion = 22658.127533 eV Total energy + Delta-G solvation = -3697.019413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32216 -40.68906 -39.13561 -36.93846 -35.77332 -34.66721 -34.23134 -32.83366 -31.94597 -30.89691 -29.00439 -27.80618 -25.61111 -24.56843 -23.56531 -23.16038 -21.69791 -21.19095 -20.43992 -19.32071 -18.67014 -17.78386 -17.16827 -17.14011 -16.34570 -16.29585 -16.24110 -15.81417 -15.58834 -15.45178 -14.86670 -14.64756 -14.45781 -14.30052 -14.04737 -13.97409 -13.63786 -13.40008 -13.25512 -13.14754 -13.13537 -12.84655 -12.69429 -12.51235 -12.18971 -12.09030 -11.86346 -11.47963 -11.14023 -11.00013 -10.88845 -10.55122 -10.45109 -10.24141 -9.83422 -9.41978 -9.07559 -8.15124 -6.31545 -0.42082 0.55084 0.70251 1.42807 1.44879 1.55651 1.88934 2.21718 2.37829 2.61391 2.84656 2.98279 3.14991 3.68645 3.87564 3.89879 4.02704 4.18650 4.39440 4.43211 4.54046 4.56336 4.57841 4.62546 4.69754 4.82310 4.87064 4.90834 5.05703 5.12469 5.15198 5.29868 5.32592 5.36321 5.41427 5.49811 5.52116 5.60530 5.67689 5.72506 5.86848 5.98640 6.02890 6.22532 6.42856 6.78349 7.11089 7.13106 7.36610 7.71940 8.89782 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.003481 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.949609 B = 8042.370449 C = 9278.445709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.702 5.702 14 C 0.512 3.488 15 O -0.567 6.567 16 C -0.197 4.197 17 C -0.035 4.035 18 C -0.040 4.040 19 C -0.059 4.059 20 C -0.097 4.097 21 C -0.153 4.153 22 C 0.555 3.445 23 O -0.583 6.583 24 N -0.723 5.723 25 C 0.083 3.917 26 C -0.085 4.085 27 C -0.115 4.115 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.402 0.598 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.414 0.586 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.129 0.871 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 1.262 -11.365 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.351 5.351 14 C 0.301 3.699 15 O -0.449 6.449 16 C -0.218 4.218 17 C -0.054 4.054 18 C -0.040 4.040 19 C -0.077 4.077 20 C -0.116 4.116 21 C -0.156 4.156 22 C 0.344 3.656 23 O -0.465 6.465 24 N -0.375 5.375 25 C -0.060 4.060 26 C -0.104 4.104 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.236 0.764 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.251 0.749 40 H 0.130 0.870 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.147 0.853 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.519 1.676 -10.181 17.007 hybrid contribution 1.664 -0.468 0.456 1.788 sum -11.855 1.208 -9.725 15.381 Atomic orbital electron populations 1.21767 0.96461 0.99052 1.00783 1.21758 0.94369 0.98965 1.00887 1.18273 0.93174 0.89217 0.81591 0.98616 1.21657 0.91904 1.38477 1.06459 0.91285 1.25721 1.02966 0.94571 0.95174 1.70056 1.36791 1.38599 1.09833 0.85400 0.79657 0.77773 0.78117 1.18476 1.21268 1.20502 1.46275 1.15921 1.55588 1.17272 1.19204 0.82012 0.78959 0.89707 1.90849 1.51178 1.60666 1.42192 1.23340 0.99012 1.02562 0.96837 1.22708 0.90789 0.94722 0.97225 1.19422 0.94683 0.93508 0.96388 1.21160 0.94778 0.96051 0.95691 1.21162 0.94619 0.99051 0.96780 1.19923 0.98801 0.95762 1.01090 1.18614 0.83358 0.82746 0.80887 1.90700 1.45916 1.50552 1.59284 1.45750 1.36409 1.09253 1.46071 1.21734 0.90328 1.02503 0.91429 1.21160 0.98041 0.94923 0.96233 1.21381 0.94256 1.00065 0.97576 0.92331 0.95680 0.93868 0.91585 0.94357 0.92784 0.76388 0.81602 0.80183 0.86360 0.84606 0.74910 0.86978 0.93244 0.92287 0.85288 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.51 71.98 0.61 -4.40 16 2 C -0.12 -5.64 5.45 30.60 0.17 -5.48 16 3 C 0.28 13.76 2.24 44.25 0.10 13.86 16 4 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -28.22 8.73 25.60 0.22 -28.00 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.39 16 9 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.70 -26.72 5.02 -450.17 -2.26 -28.98 16 14 C 0.51 17.87 5.56 86.43 0.48 18.35 16 15 O -0.57 -23.50 9.60 -4.23 -0.04 -23.54 16 16 C -0.20 -4.55 9.92 23.65 0.23 -4.32 16 17 C -0.04 -0.70 9.79 23.84 0.23 -0.47 16 18 C -0.04 -1.03 4.46 -20.11 -0.09 -1.12 16 19 C -0.06 -1.68 6.46 22.53 0.15 -1.54 16 20 C -0.10 -2.70 9.52 22.48 0.21 -2.49 16 21 C -0.15 -4.54 5.88 -20.03 -0.12 -4.66 16 22 C 0.55 16.86 7.77 86.80 0.67 17.53 16 23 O -0.58 -21.38 16.33 -3.86 -0.06 -21.44 16 24 N -0.72 -16.41 5.66 -487.45 -2.76 -19.17 16 25 C 0.08 1.50 10.70 127.77 1.37 2.86 16 26 C -0.08 -2.42 9.57 22.48 0.22 -2.21 16 27 C -0.11 -2.87 9.77 22.53 0.22 -2.65 16 28 H 0.06 2.17 3.53 -2.39 -0.01 2.17 16 29 H 0.02 1.12 7.84 -2.39 -0.02 1.10 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.07 3.53 5.95 -2.39 -0.01 3.52 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 34 H 0.40 12.89 8.52 -92.71 -0.79 12.10 16 35 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.12 3.45 5.36 -2.91 -0.02 3.44 16 38 H 0.14 3.10 6.38 -2.91 -0.02 3.08 16 39 H 0.41 7.44 6.85 -92.71 -0.63 6.81 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.13 3.62 7.63 -2.91 -0.02 3.60 16 44 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -73.07 358.98 1.89 -71.18 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.38 Total: 33.15 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.13 Total: -3.44 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -4.78 Total: -99.54 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.10 Total: -44.98 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -73.07 1.89 -71.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492606331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.396 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds