Wall clock time and date at job start Tue Mar 31 2020 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47632 * 2 1 4 4 N 1.46497 * 109.47395 * 120.00661 * 2 1 3 5 5 C 1.46501 * 120.00219 * 119.20817 * 4 2 1 6 6 C 1.50703 * 109.46630 * 270.00043 * 5 4 2 7 7 H 1.07991 * 120.00481 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99495 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99552 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00114 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47248 * 89.99819 * 10 8 6 12 12 H 1.48498 * 109.47077 * 210.00399 * 10 8 6 13 13 H 1.48505 * 109.47476 * 330.00107 * 10 8 6 14 14 C 1.34776 * 119.99697 * 299.20561 * 4 2 1 15 15 O 1.21276 * 120.00151 * 5.30936 * 14 4 2 16 16 C 1.50700 * 119.99899 * 185.31413 * 14 4 2 17 17 C 1.53000 * 109.47102 * 177.82476 * 16 14 4 18 18 C 1.50706 * 109.47160 * 179.97438 * 17 16 14 19 19 N 1.29902 * 124.85446 * 89.69191 * 18 17 16 20 20 C 1.36058 * 108.79845 * 179.89684 * 19 18 17 21 21 C 1.39590 * 133.80325 * 180.09729 * 20 19 18 22 22 C 1.37685 * 119.72860 * 180.26454 * 21 20 19 23 23 C 1.38719 * 120.42152 * 0.05171 * 22 21 20 24 24 C 1.37908 * 120.47604 * 359.94913 * 23 22 21 25 25 C 1.38670 * 119.87422 * 0.02821 * 24 23 22 26 26 O 1.34234 * 124.85544 * 270.00414 * 18 17 16 27 27 H 1.09007 * 109.46598 * 306.61179 * 1 2 3 28 28 H 1.08996 * 109.47178 * 66.61062 * 1 2 3 29 29 H 1.08997 * 109.47544 * 186.61696 * 1 2 3 30 30 H 1.09002 * 109.46966 * 240.00643 * 2 1 3 31 31 H 1.08997 * 109.47155 * 173.88990 * 3 2 1 32 32 H 1.09000 * 109.47005 * 293.89553 * 3 2 1 33 33 H 1.09003 * 109.46486 * 53.88637 * 3 2 1 34 34 H 1.09001 * 109.47331 * 29.99663 * 5 4 2 35 35 H 1.08994 * 109.47401 * 150.00052 * 5 4 2 36 36 H 0.97000 * 119.99858 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.47019 * 297.82321 * 16 14 4 38 38 H 1.09005 * 109.47374 * 57.82007 * 16 14 4 39 39 H 1.08995 * 109.47017 * 299.99594 * 17 16 14 40 40 H 1.09000 * 109.47010 * 59.99809 * 17 16 14 41 41 H 1.08004 * 120.13851 * 0.31709 * 21 20 19 42 42 H 1.08001 * 119.78862 * 180.02562 * 22 21 20 43 43 H 1.07995 * 119.76087 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.06105 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8463 -1.8919 1.0616 6 6 1.9608 -3.1108 1.0268 7 1 0.8887 -3.0017 1.0973 8 6 2.5196 -4.3655 0.9049 9 7 1.7469 -5.4292 0.8740 10 14 4.3739 -4.5542 0.7822 11 1 4.9476 -4.7030 2.1438 12 1 4.6967 -5.7579 -0.0253 13 1 4.9519 -3.3515 0.1304 14 6 1.7060 -0.2211 2.4201 15 8 0.9431 0.7147 2.5341 16 6 2.3050 -0.8587 3.6472 17 6 1.8334 -0.1077 4.8940 18 6 2.4319 -0.7457 6.1212 19 7 3.5714 -0.4143 6.6495 20 6 3.7913 -1.1943 7.7424 21 6 4.8248 -1.2789 8.6769 22 6 4.7517 -2.2041 9.6939 23 6 3.6588 -3.0525 9.7944 24 6 2.6305 -2.9800 8.8783 25 6 2.6874 -2.0538 7.8479 26 8 1.8665 -1.7419 6.8211 27 1 -0.3633 0.6129 0.8250 28 1 -0.3633 0.4079 -0.9432 29 1 -0.3634 -1.0208 0.1184 30 1 1.8933 -0.5137 -0.8901 31 1 3.1246 1.4443 0.1094 32 1 1.7688 1.9238 -0.9396 33 1 1.5901 1.9869 0.8303 34 1 3.4222 -1.8347 0.1379 35 1 3.5266 -1.9611 1.9103 36 1 2.1399 -6.3118 0.7879 37 1 1.9867 -1.8996 3.7079 38 1 3.3924 -0.8144 3.5858 39 1 2.1517 0.9330 4.8333 40 1 0.7461 -0.1521 4.9554 41 1 5.6779 -0.6207 8.6030 42 1 5.5506 -2.2702 10.4176 43 1 3.6126 -3.7745 10.5962 44 1 1.7826 -3.6435 8.9632 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522583301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:26 Heat of formation + Delta-G solvation = -4.920186 kcal Electronic energy + Delta-G solvation = -26162.453017 eV Core-core repulsion = 22467.205509 eV Total energy + Delta-G solvation = -3695.247508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.24539 -39.57342 -38.10623 -35.72458 -34.90131 -33.67566 -32.79030 -31.60154 -30.77461 -29.24723 -27.64353 -26.66729 -25.55347 -23.21890 -22.61714 -22.24052 -21.66984 -20.83130 -18.22716 -18.08775 -17.26710 -17.07110 -16.70360 -16.25268 -15.68400 -15.33466 -15.14151 -14.31976 -14.28233 -14.01986 -13.82239 -13.41095 -13.13897 -12.94351 -12.66246 -12.58027 -12.55224 -12.35159 -12.19634 -11.98178 -11.70877 -11.62230 -11.49219 -11.23999 -11.02941 -10.92939 -10.85266 -10.65250 -10.47961 -10.37291 -10.25674 -9.62728 -8.99949 -8.90379 -8.74897 -8.49891 -7.78817 -6.24440 -4.26327 0.59776 1.11061 2.35906 2.49491 3.15479 3.22948 3.25008 3.26344 3.52599 3.64445 3.91030 4.23914 4.42839 4.69423 4.94491 4.97069 5.03275 5.05649 5.13289 5.20522 5.28780 5.33142 5.53471 5.63668 5.69637 5.77882 5.82197 5.93469 5.98112 6.04459 6.14091 6.15245 6.18521 6.20747 6.27694 6.29714 6.43865 6.49864 6.51675 6.59754 6.67013 6.88039 7.36944 7.41771 7.62814 8.10001 8.38092 8.79201 8.87821 9.34914 10.88089 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.004020 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.535881 B = 6963.919837 C = 8537.805151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.586 5.586 5 C 0.206 3.794 6 C -0.542 4.542 7 H 0.080 0.920 8 C 0.077 3.923 9 N -0.890 5.890 10 Si 0.869 3.131 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.528 3.472 15 O -0.565 6.565 16 C -0.138 4.138 17 C -0.014 4.014 18 C 0.268 3.732 19 N -0.484 5.484 20 C 0.025 3.975 21 C -0.065 4.065 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.090 4.090 25 C 0.005 3.995 26 O -0.208 6.208 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 7.545 12.377 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.223 4.223 4 N -0.316 5.316 5 C 0.085 3.915 6 C -0.580 4.580 7 H 0.098 0.902 8 C -0.127 4.127 9 N -0.527 5.527 10 Si 0.695 3.305 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.316 3.684 15 O -0.446 6.446 16 C -0.179 4.179 17 C -0.052 4.052 18 C 0.057 3.943 19 N -0.214 5.214 20 C -0.087 4.087 21 C -0.084 4.084 22 C -0.142 4.142 23 C -0.118 4.118 24 C -0.108 4.108 25 C -0.045 4.045 26 O -0.099 6.099 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.402 8.263 12.160 15.347 hybrid contribution 0.619 -1.178 0.045 1.331 sum 5.021 7.085 12.206 14.980 Atomic orbital electron populations 1.22170 0.95259 1.02967 1.01774 1.20862 0.94645 0.92126 0.87830 1.22198 1.00781 0.96914 1.02414 1.48006 1.51148 1.27904 1.04535 1.19873 0.91029 0.83133 0.97470 1.21389 0.95515 0.89025 1.52060 0.90225 1.24875 0.97807 0.95730 0.94254 1.69887 1.35288 0.98390 1.49122 0.86965 0.86179 0.78464 0.78893 1.19896 1.20809 1.18809 1.20030 0.80993 0.82835 0.84539 1.90561 1.36898 1.30358 1.86783 1.21652 1.02616 1.02437 0.91192 1.20067 1.01824 0.99272 0.84076 1.26660 0.87961 0.85123 0.94535 1.70683 1.15261 1.26669 1.08763 1.19961 0.96788 0.95898 0.96067 1.20308 0.96782 0.98832 0.92481 1.21016 0.98829 0.95905 0.98422 1.20980 0.93015 0.99393 0.98460 1.19921 1.00918 0.97613 0.92388 1.20384 0.91598 1.00698 0.91860 1.84561 1.44763 1.46468 1.34150 0.90775 0.93095 0.92076 0.89879 0.93157 0.92484 0.90838 0.94831 0.95235 0.92348 0.87017 0.88603 0.86668 0.87588 0.84781 0.84713 0.84373 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.01 37.16 0.33 -2.51 16 2 C 0.15 2.62 3.28 -67.93 -0.22 2.40 16 3 C -0.17 -2.50 9.01 37.16 0.33 -2.17 16 4 N -0.59 -11.50 2.41 -167.47 -0.40 -11.90 16 5 C 0.21 4.46 4.06 -5.19 -0.02 4.44 16 6 C -0.54 -14.05 9.94 -34.44 -0.34 -14.39 16 7 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 10 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 14 C 0.53 9.97 7.08 -10.99 -0.08 9.89 16 15 O -0.56 -11.06 12.37 5.56 0.07 -10.99 16 16 C -0.14 -2.34 4.17 -27.88 -0.12 -2.46 16 17 C -0.01 -0.21 5.13 -27.88 -0.14 -0.35 16 18 C 0.27 4.29 7.49 -13.09 -0.10 4.20 16 19 N -0.48 -8.02 11.34 -8.70 -0.10 -8.12 16 20 C 0.02 0.37 7.24 -84.71 -0.61 -0.24 16 21 C -0.07 -0.77 10.10 -39.28 -0.40 -1.17 16 22 C -0.12 -1.14 10.02 -39.61 -0.40 -1.53 16 23 C -0.10 -0.93 10.03 -39.52 -0.40 -1.32 16 24 C -0.09 -1.05 10.06 -39.54 -0.40 -1.45 16 25 C 0.01 0.08 7.43 -38.65 -0.29 -0.21 16 26 O -0.21 -3.43 10.77 3.61 0.04 -3.39 16 27 H 0.07 1.35 6.27 -51.93 -0.33 1.03 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.44 7.79 -51.93 -0.40 1.04 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.21 6.47 -51.93 -0.34 0.87 16 34 H 0.03 0.72 6.97 -51.93 -0.36 0.36 16 35 H 0.03 0.62 5.81 -51.93 -0.30 0.32 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.11 2.08 8.10 -51.92 -0.42 1.66 16 38 H 0.10 1.55 7.48 -51.93 -0.39 1.17 16 39 H 0.12 1.59 8.12 -51.93 -0.42 1.17 16 40 H 0.11 1.50 8.08 -51.93 -0.42 1.08 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -30.92 364.83 -8.08 -39.00 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.35 Total: 4.61 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.94 Total: -4.90 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.27 Total: -44.99 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.11 Total: -14.38 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.92 -8.08 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522583301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.077 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds