Wall clock time and date at job start Tue Mar 31 2020 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47632 * 2 1 4 4 N 1.46497 * 109.47395 * 120.00661 * 2 1 3 5 5 C 1.46501 * 120.00219 * 119.20817 * 4 2 1 6 6 C 1.50703 * 109.46630 * 270.00043 * 5 4 2 7 7 H 1.07991 * 120.00481 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99495 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99552 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00114 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47248 * 89.99819 * 10 8 6 12 12 H 1.48498 * 109.47077 * 210.00399 * 10 8 6 13 13 H 1.48505 * 109.47476 * 330.00107 * 10 8 6 14 14 C 1.34776 * 119.99697 * 299.20561 * 4 2 1 15 15 O 1.21276 * 120.00151 * 5.30936 * 14 4 2 16 16 C 1.50700 * 119.99899 * 185.31413 * 14 4 2 17 17 C 1.53000 * 109.47102 * 177.82476 * 16 14 4 18 18 C 1.50706 * 109.47160 * 179.97438 * 17 16 14 19 19 N 1.29902 * 124.85446 * 89.69191 * 18 17 16 20 20 C 1.36058 * 108.79845 * 179.89684 * 19 18 17 21 21 C 1.39590 * 133.80325 * 180.09729 * 20 19 18 22 22 C 1.37685 * 119.72860 * 180.26454 * 21 20 19 23 23 C 1.38719 * 120.42152 * 0.05171 * 22 21 20 24 24 C 1.37908 * 120.47604 * 359.94913 * 23 22 21 25 25 C 1.38670 * 119.87422 * 0.02821 * 24 23 22 26 26 O 1.34234 * 124.85544 * 270.00414 * 18 17 16 27 27 H 1.09007 * 109.46598 * 306.61179 * 1 2 3 28 28 H 1.08996 * 109.47178 * 66.61062 * 1 2 3 29 29 H 1.08997 * 109.47544 * 186.61696 * 1 2 3 30 30 H 1.09002 * 109.46966 * 240.00643 * 2 1 3 31 31 H 1.08997 * 109.47155 * 173.88990 * 3 2 1 32 32 H 1.09000 * 109.47005 * 293.89553 * 3 2 1 33 33 H 1.09003 * 109.46486 * 53.88637 * 3 2 1 34 34 H 1.09001 * 109.47331 * 29.99663 * 5 4 2 35 35 H 1.08994 * 109.47401 * 150.00052 * 5 4 2 36 36 H 0.97000 * 119.99858 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.47019 * 297.82321 * 16 14 4 38 38 H 1.09005 * 109.47374 * 57.82007 * 16 14 4 39 39 H 1.08995 * 109.47017 * 299.99594 * 17 16 14 40 40 H 1.09000 * 109.47010 * 59.99809 * 17 16 14 41 41 H 1.08004 * 120.13851 * 0.31709 * 21 20 19 42 42 H 1.08001 * 119.78862 * 180.02562 * 22 21 20 43 43 H 1.07995 * 119.76087 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.06105 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8463 -1.8919 1.0616 6 6 1.9608 -3.1108 1.0268 7 1 0.8887 -3.0017 1.0973 8 6 2.5196 -4.3655 0.9049 9 7 1.7469 -5.4292 0.8740 10 14 4.3739 -4.5542 0.7822 11 1 4.9476 -4.7030 2.1438 12 1 4.6967 -5.7579 -0.0253 13 1 4.9519 -3.3515 0.1304 14 6 1.7060 -0.2211 2.4201 15 8 0.9431 0.7147 2.5341 16 6 2.3050 -0.8587 3.6472 17 6 1.8334 -0.1077 4.8940 18 6 2.4319 -0.7457 6.1212 19 7 3.5714 -0.4143 6.6495 20 6 3.7913 -1.1943 7.7424 21 6 4.8248 -1.2789 8.6769 22 6 4.7517 -2.2041 9.6939 23 6 3.6588 -3.0525 9.7944 24 6 2.6305 -2.9800 8.8783 25 6 2.6874 -2.0538 7.8479 26 8 1.8665 -1.7419 6.8211 27 1 -0.3633 0.6129 0.8250 28 1 -0.3633 0.4079 -0.9432 29 1 -0.3634 -1.0208 0.1184 30 1 1.8933 -0.5137 -0.8901 31 1 3.1246 1.4443 0.1094 32 1 1.7688 1.9238 -0.9396 33 1 1.5901 1.9869 0.8303 34 1 3.4222 -1.8347 0.1379 35 1 3.5266 -1.9611 1.9103 36 1 2.1399 -6.3118 0.7879 37 1 1.9867 -1.8996 3.7079 38 1 3.3924 -0.8144 3.5858 39 1 2.1517 0.9330 4.8333 40 1 0.7461 -0.1521 4.9554 41 1 5.6779 -0.6207 8.6030 42 1 5.5506 -2.2702 10.4176 43 1 3.6126 -3.7745 10.5962 44 1 1.7826 -3.6435 8.9632 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522583301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:26 Heat of formation + Delta-G solvation = -24.508598 kcal Electronic energy + Delta-G solvation = -26163.302434 eV Core-core repulsion = 22467.205509 eV Total energy + Delta-G solvation = -3696.096925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.33091 -41.09385 -39.00434 -37.23659 -36.09824 -35.20942 -34.44183 -33.16005 -31.65501 -30.34214 -29.45783 -27.99453 -26.81781 -24.42812 -24.16119 -23.39736 -22.88119 -22.09213 -19.70312 -19.12855 -19.04146 -18.31049 -17.96684 -17.64024 -17.05151 -16.64519 -16.44504 -16.03698 -15.35555 -15.11826 -14.90610 -14.77883 -14.65149 -14.43293 -14.20136 -13.91147 -13.87504 -13.54431 -13.34146 -13.27461 -13.16543 -12.85134 -12.63015 -12.60187 -12.55685 -12.33441 -12.28392 -12.13225 -11.95793 -11.84252 -11.63446 -11.56033 -10.82049 -10.47123 -9.83867 -9.48615 -9.40808 -8.32111 -6.38931 -0.37214 0.19673 1.27317 1.36525 1.37774 1.43655 1.46879 1.72305 2.25906 2.31292 2.63481 2.72411 3.02043 3.46402 3.63478 3.82441 3.87817 3.96268 4.13589 4.15745 4.23739 4.27456 4.29172 4.38415 4.41976 4.50067 4.63760 4.71799 4.81330 4.84040 4.84514 4.92371 4.94172 4.99401 5.04647 5.05396 5.18334 5.31635 5.32412 5.35359 5.41064 5.46102 5.70894 5.83553 6.18283 6.50592 6.61866 6.70765 7.22784 7.34787 8.84238 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.004020 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.535881 B = 6963.919837 C = 8537.805151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.593 5.593 5 C 0.214 3.786 6 C -0.539 4.539 7 H 0.032 0.968 8 C 0.019 3.981 9 N -0.942 5.942 10 Si 0.936 3.064 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.235 1.235 14 C 0.524 3.476 15 O -0.571 6.571 16 C -0.131 4.131 17 C -0.001 4.001 18 C 0.251 3.749 19 N -0.498 5.498 20 C -0.011 4.011 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.082 4.082 24 C -0.107 4.107 25 C -0.027 4.027 26 O -0.228 6.228 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.268 0.732 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.149 0.851 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 8.176 13.755 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.323 5.323 5 C 0.092 3.908 6 C -0.577 4.577 7 H 0.050 0.950 8 C -0.180 4.180 9 N -0.582 5.582 10 Si 0.759 3.241 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.158 1.158 14 C 0.313 3.687 15 O -0.453 6.453 16 C -0.171 4.171 17 C -0.040 4.040 18 C 0.040 3.960 19 N -0.228 5.228 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.076 4.076 26 O -0.120 6.120 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.166 0.834 42 H 0.195 0.805 43 H 0.198 0.802 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.155 8.930 13.543 17.730 hybrid contribution -0.308 -1.416 -0.243 1.470 sum 6.846 7.514 13.300 16.740 Atomic orbital electron populations 1.22083 0.95528 1.00780 1.02934 1.21134 0.94535 0.93711 0.87192 1.22080 1.00897 0.94725 1.03310 1.48080 1.51248 1.27473 1.05549 1.19680 0.90575 0.82044 0.98475 1.21557 0.93961 0.91124 1.51077 0.94985 1.25769 1.03143 0.95174 0.93877 1.70051 1.37806 0.99092 1.51234 0.85883 0.79685 0.79351 0.79195 1.19402 1.20936 1.15779 1.20318 0.80785 0.82740 0.84845 1.90552 1.37050 1.30743 1.86924 1.21553 1.03017 1.01124 0.91425 1.19939 1.01725 0.99357 0.82945 1.26675 0.88384 0.85811 0.95150 1.70596 1.15373 1.27252 1.09559 1.20425 0.98289 0.96603 0.96877 1.20714 0.96436 0.99959 0.92494 1.21566 0.99540 0.93910 0.97658 1.21572 0.91451 0.99022 0.97919 1.20387 1.02567 0.97406 0.92171 1.20988 0.91816 1.02196 0.92618 1.84506 1.45657 1.46843 1.35016 0.91876 0.90113 0.95325 0.89529 0.92516 0.89733 0.92243 0.93466 0.93851 0.92341 0.89292 0.87675 0.85576 0.87591 0.83361 0.80499 0.80151 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.01 71.98 0.65 -4.79 16 2 C 0.14 4.72 3.28 44.99 0.15 4.87 16 3 C -0.15 -4.31 9.01 71.98 0.65 -3.66 16 4 N -0.59 -23.31 2.41 -802.15 -1.93 -25.24 16 5 C 0.21 9.17 4.06 85.63 0.35 9.52 16 6 C -0.54 -28.80 9.94 25.60 0.25 -28.54 16 7 H 0.03 1.97 8.06 -2.92 -0.02 1.95 16 8 C 0.02 1.05 5.47 84.66 0.46 1.51 16 9 N -0.94 -56.51 13.96 21.45 0.30 -56.21 16 10 Si 0.94 40.51 27.47 68.60 1.88 42.40 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 14 C 0.52 20.08 7.08 87.66 0.62 20.70 16 15 O -0.57 -22.59 12.37 -3.02 -0.04 -22.62 16 16 C -0.13 -4.54 4.17 29.85 0.12 -4.42 16 17 C 0.00 -0.04 5.13 29.85 0.15 0.11 16 18 C 0.25 8.39 7.49 88.40 0.66 9.05 16 19 N -0.50 -16.86 11.34 -296.27 -3.36 -20.22 16 20 C -0.01 -0.33 7.24 39.32 0.28 -0.05 16 21 C -0.08 -1.70 10.10 22.47 0.23 -1.47 16 22 C -0.11 -1.59 10.02 22.25 0.22 -1.37 16 23 C -0.08 -1.22 10.03 22.31 0.22 -0.99 16 24 C -0.11 -2.36 10.06 22.29 0.22 -2.14 16 25 C -0.03 -0.82 7.43 22.88 0.17 -0.65 16 26 O -0.23 -7.95 10.77 -9.99 -0.11 -8.06 16 27 H 0.06 2.33 6.27 -2.38 -0.01 2.32 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 2.91 7.79 -2.39 -0.02 2.89 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.86 6.47 -2.39 -0.02 1.85 16 34 H 0.05 1.92 6.97 -2.39 -0.02 1.90 16 35 H 0.04 1.76 5.81 -2.39 -0.01 1.75 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.09 3.51 8.10 -2.38 -0.02 3.49 16 38 H 0.11 3.42 7.48 -2.38 -0.02 3.40 16 39 H 0.13 3.53 8.12 -2.39 -0.02 3.51 16 40 H 0.11 3.18 8.08 -2.39 -0.02 3.16 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -71.12 364.83 3.12 -68.01 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.94 Total: 24.25 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.42 Total: -2.31 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.99 Total: -101.66 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.14 Total: -30.68 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.88 Total: 42.40 kcal Total: -71.12 3.12 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522583301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.498 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds