Wall clock time and date at job start Tue Mar 31 2020 11:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47360 * 2 1 4 4 H 1.09004 * 109.46778 * 305.63613 * 3 2 1 5 5 C 1.50694 * 109.47283 * 185.63749 * 3 2 1 6 6 H 1.08001 * 119.99992 * 275.00269 * 5 3 2 7 7 C 1.37877 * 120.00436 * 95.00494 * 5 3 2 8 8 N 1.31516 * 120.00097 * 184.84168 * 7 5 3 9 9 Si 1.86803 * 119.99803 * 4.83236 * 7 5 3 10 10 H 1.48502 * 109.46973 * 84.82474 * 9 7 5 11 11 H 1.48502 * 109.47031 * 204.82064 * 9 7 5 12 12 H 1.48501 * 109.47338 * 324.82408 * 9 7 5 13 13 N 1.46492 * 109.47150 * 65.63076 * 3 2 1 14 14 C 1.34777 * 120.00511 * 275.00342 * 13 3 2 15 15 O 1.21275 * 119.99890 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00163 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.85595 * 62.33826 * 16 14 13 18 18 C 1.54630 * 110.96794 * 298.54641 * 16 14 13 19 19 C 1.51284 * 104.19394 * 266.67697 * 18 16 14 20 20 O 1.21291 * 124.93696 * 163.78546 * 19 18 16 21 21 N 1.34412 * 110.11764 * 343.74839 * 19 18 16 22 22 C 1.39928 * 124.35173 * 179.56782 * 21 19 18 23 23 C 1.38868 * 120.06693 * 5.36967 * 22 21 19 24 24 C 1.38116 * 119.93151 * 179.76573 * 23 22 21 25 25 C 1.38284 * 120.06352 * 0.48474 * 24 23 22 26 26 C 1.38282 * 120.14622 * 359.77393 * 25 24 23 27 27 C 1.38111 * 120.06744 * 359.97438 * 26 25 24 28 28 C 1.46767 * 111.30137 * 359.59488 * 21 19 18 29 29 H 1.08999 * 109.47192 * 300.00218 * 1 2 3 30 30 H 1.09004 * 109.47055 * 60.00166 * 1 2 3 31 31 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47192 * 239.99782 * 2 1 3 33 33 H 1.09004 * 109.47055 * 119.99834 * 2 1 3 34 34 H 0.97003 * 119.99881 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99811 * 95.00303 * 13 3 2 36 36 H 1.08997 * 110.48661 * 25.35797 * 18 16 14 37 37 H 1.09003 * 110.48346 * 147.87311 * 18 16 14 38 38 H 1.08006 * 120.03853 * 359.97438 * 23 22 21 39 39 H 1.07996 * 119.96907 * 180.21154 * 24 23 22 40 40 H 1.07999 * 119.92906 * 179.74338 * 25 24 23 41 41 H 1.08000 * 119.96732 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.03875 * 180.02562 * 27 26 25 43 43 H 1.08996 * 110.24257 * 258.01150 * 28 21 19 44 44 H 1.08996 * 110.24766 * 136.01731 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4448 -0.1396 6 1 4.1643 1.3336 0.7350 7 6 4.1170 1.5889 -1.3837 8 7 5.4219 1.4957 -1.5186 9 14 3.0445 1.9163 -2.8778 10 1 2.7776 3.3731 -2.9858 11 1 3.7445 1.4493 -4.1014 12 1 1.7591 1.1868 -2.7339 13 7 1.6655 2.0929 1.2581 14 6 0.4495 2.6594 1.3881 15 8 -0.3349 2.6303 0.4636 16 6 0.0641 3.3279 2.6825 17 1 0.7193 4.1733 2.8928 18 6 0.0735 2.3163 3.8520 19 6 -1.3550 1.8239 3.9280 20 8 -1.7157 0.8275 4.5181 21 7 -2.1661 2.6516 3.2471 22 6 -3.5477 2.4721 3.1161 23 6 -4.1840 1.4458 3.8019 24 6 -5.5486 1.2742 3.6743 25 6 -6.2793 2.1168 2.8569 26 6 -5.6478 3.1364 2.1684 27 6 -4.2844 3.3164 2.2959 28 6 -1.4166 3.7676 2.6582 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8274 1.5967 -2.3940 35 1 2.2928 2.1158 1.9977 36 1 0.7509 1.4900 3.6362 37 1 0.3589 2.8098 4.7810 38 1 -3.6131 0.7846 4.4370 39 1 -6.0446 0.4784 4.2100 40 1 -7.3455 1.9781 2.7555 41 1 -6.2213 3.7925 1.5305 42 1 -3.7917 4.1131 1.7583 43 1 -1.5521 4.6695 3.2550 44 1 -1.7418 3.9408 1.6325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546570587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:46 Heat of formation + Delta-G solvation = -43.037007 kcal Electronic energy + Delta-G solvation = -26940.917389 eV Core-core repulsion = 23244.017012 eV Total energy + Delta-G solvation = -3696.900377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.41384 -39.34712 -38.46681 -36.58471 -35.20464 -33.48870 -32.37738 -31.41393 -31.00870 -29.20045 -27.91972 -27.56103 -24.19482 -23.15694 -22.78972 -21.96996 -20.19070 -19.89687 -19.59196 -17.91866 -17.79072 -16.66410 -16.51707 -15.75287 -15.58212 -15.52931 -14.85408 -14.84107 -14.30329 -14.06727 -13.74057 -13.62060 -13.48784 -13.43859 -13.16479 -12.83381 -12.64547 -12.12678 -12.09977 -11.91239 -11.86867 -11.69780 -11.57766 -11.24794 -11.00699 -10.74909 -10.72745 -10.36205 -10.06107 -9.90275 -9.73133 -9.30721 -9.23854 -9.03274 -8.76755 -8.13263 -8.00607 -6.29846 -4.34049 1.17051 1.32150 2.44442 2.68189 3.02215 3.21056 3.29610 3.36664 3.69130 3.77847 4.03484 4.17037 4.26640 4.61152 4.81061 4.86568 4.90911 5.07508 5.08993 5.18754 5.27183 5.33119 5.40790 5.45850 5.53038 5.60867 5.61894 5.93736 6.00405 6.05073 6.11605 6.20420 6.29623 6.44405 6.47874 6.58642 6.74379 6.89530 6.94401 6.95472 6.99243 7.21658 7.26622 7.47658 7.90153 8.02998 8.45448 8.69533 8.82262 9.31848 10.81685 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003597 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.775038 B = 7782.717627 C = 8171.505765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.505 3.495 15 O -0.543 6.543 16 C -0.128 4.128 17 H 0.129 0.871 18 C -0.145 4.145 19 C 0.520 3.480 20 O -0.511 6.511 21 N -0.553 5.553 22 C 0.173 3.827 23 C -0.160 4.160 24 C -0.094 4.094 25 C -0.151 4.151 26 C -0.094 4.094 27 C -0.155 4.155 28 C 0.109 3.891 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.394 0.606 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.433 5.752 10.879 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.289 3.711 15 O -0.422 6.422 16 C -0.150 4.150 17 H 0.147 0.853 18 C -0.185 4.185 19 C 0.309 3.691 20 O -0.387 6.387 21 N -0.275 5.275 22 C 0.079 3.921 23 C -0.180 4.180 24 C -0.112 4.112 25 C -0.170 4.170 26 C -0.112 4.112 27 C -0.175 4.175 28 C -0.014 4.014 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.171 0.829 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.104 0.896 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.948 5.184 10.370 20.534 hybrid contribution -0.008 0.276 -0.619 0.678 sum -16.956 5.460 9.750 20.307 Atomic orbital electron populations 1.21880 0.97398 0.98946 1.01797 1.22080 0.93587 0.99421 1.01331 1.19194 0.95560 0.89090 0.82606 0.93050 1.20991 0.88578 1.51928 0.95507 0.90286 1.24935 0.94858 0.93636 0.98800 1.69879 1.09736 1.48076 1.24603 0.86914 0.81285 0.79589 0.82296 1.19858 1.21163 1.18373 1.46597 1.14110 1.55406 1.18390 1.20027 0.83089 0.79597 0.88435 1.90681 1.50741 1.59759 1.41050 1.22409 0.97544 1.00287 0.94731 0.85325 1.22400 0.95084 1.01053 0.99997 1.21000 0.88523 0.82180 0.77354 1.90616 1.79852 1.24998 1.43185 1.45747 1.05415 1.26192 1.50188 1.17792 0.81370 0.96207 0.96682 1.21648 0.95320 0.98982 1.02039 1.21033 0.93399 0.98772 0.98038 1.21096 0.99926 0.96803 0.99183 1.20917 0.93730 0.97810 0.98785 1.20824 0.94519 1.01447 1.00745 1.22205 0.89379 0.88240 1.01540 0.93456 0.93154 0.95093 0.92014 0.92977 0.92166 0.77249 0.86699 0.86289 0.82894 0.85830 0.86199 0.85767 0.85550 0.89557 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.15 0.32 -2.57 16 2 C -0.13 -2.66 5.59 -26.73 -0.15 -2.81 16 3 C 0.24 5.31 1.89 -69.09 -0.13 5.18 16 4 H 0.05 1.26 4.73 -51.93 -0.25 1.02 16 5 C -0.53 -13.64 9.05 -34.44 -0.31 -13.95 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 8 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 9 Si 0.87 20.95 26.99 -169.99 -4.59 16.36 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 13 N -0.70 -12.52 4.75 -54.94 -0.26 -12.79 16 14 C 0.50 8.34 5.76 -10.99 -0.06 8.28 16 15 O -0.54 -10.86 12.65 5.56 0.07 -10.79 16 16 C -0.13 -1.41 3.54 -90.14 -0.32 -1.73 16 17 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.15 -1.54 6.39 -26.74 -0.17 -1.71 16 19 C 0.52 7.35 7.92 -10.86 -0.09 7.27 16 20 O -0.51 -8.63 14.81 5.55 0.08 -8.55 16 21 N -0.55 -7.33 3.14 -112.27 -0.35 -7.68 16 22 C 0.17 2.38 6.60 -83.69 -0.55 1.83 16 23 C -0.16 -2.21 9.29 -39.39 -0.37 -2.58 16 24 C -0.09 -1.07 10.04 -39.61 -0.40 -1.47 16 25 C -0.15 -1.56 10.04 -39.55 -0.40 -1.95 16 26 C -0.09 -0.98 10.04 -39.61 -0.40 -1.38 16 27 C -0.15 -1.85 9.42 -39.39 -0.37 -2.22 16 28 C 0.11 1.18 5.88 -3.12 -0.02 1.16 16 29 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 30 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.39 6.10 8.41 -40.82 -0.34 5.76 16 36 H 0.11 1.30 7.51 -51.93 -0.39 0.91 16 37 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.15 2.33 5.25 -52.48 -0.28 2.05 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.33 6.75 -52.49 -0.35 0.97 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.11 1.32 6.04 -51.93 -0.31 1.00 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -32.67 354.37 -8.45 -41.12 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.00 Total: 8.16 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.51 Total: -6.53 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.16 Total: -45.12 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.15 Total: -19.34 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.59 Total: 16.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.67 -8.45 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.914 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds