Wall clock time and date at job start Tue Mar 31 2020 11:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08995 * 109.46664 * 55.00577 * 3 2 1 5 5 C 1.50703 * 109.46975 * 174.99941 * 3 2 1 6 6 H 1.08000 * 119.99761 * 120.00377 * 5 3 2 7 7 C 1.37874 * 120.00093 * 300.00099 * 5 3 2 8 8 N 1.31514 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47151 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47275 * 120.00297 * 9 7 5 12 12 H 1.48506 * 109.47235 * 240.00267 * 9 7 5 13 13 N 1.46500 * 109.47235 * 295.00097 * 3 2 1 14 14 C 1.34780 * 119.99899 * 84.99948 * 13 3 2 15 15 O 1.21278 * 119.99668 * 359.97438 * 14 13 3 16 16 C 1.50691 * 119.99746 * 179.97438 * 14 13 3 17 17 H 1.09005 * 110.85883 * 56.21096 * 16 14 13 18 18 C 1.54634 * 110.97186 * 292.37676 * 16 14 13 19 19 C 1.51275 * 104.19773 * 217.08543 * 18 16 14 20 20 O 1.21288 * 124.94417 * 196.25246 * 19 18 16 21 21 N 1.34416 * 110.11865 * 16.25148 * 19 18 16 22 22 C 1.39924 * 124.35662 * 180.38670 * 21 19 18 23 23 C 1.38880 * 120.06548 * 354.02488 * 22 21 19 24 24 C 1.38115 * 119.92505 * 179.74301 * 23 22 21 25 25 C 1.38282 * 120.07097 * 0.53845 * 24 23 22 26 26 C 1.38278 * 120.14103 * 359.71523 * 25 24 23 27 27 C 1.38113 * 120.07134 * 0.02562 * 26 25 24 28 28 C 1.46769 * 111.30080 * 0.41034 * 21 19 18 29 29 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46912 * 299.99967 * 1 2 3 31 31 H 1.08999 * 109.46871 * 59.99767 * 1 2 3 32 32 H 1.09008 * 109.47027 * 240.00469 * 2 1 3 33 33 H 1.09000 * 109.47332 * 120.00497 * 2 1 3 34 34 H 0.97002 * 119.99973 * 179.97438 * 8 7 5 35 35 H 0.96993 * 119.99784 * 264.99793 * 13 3 2 36 36 H 1.08994 * 110.48333 * 335.76889 * 18 16 14 37 37 H 1.09005 * 110.47937 * 98.40662 * 18 16 14 38 38 H 1.07998 * 120.03372 * 359.97438 * 23 22 21 39 39 H 1.08003 * 119.95912 * 180.25265 * 24 23 22 40 40 H 1.07997 * 119.92944 * 179.70287 * 25 24 23 41 41 H 1.08003 * 119.96130 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03268 * 179.97438 * 27 26 25 43 43 H 1.09004 * 110.24589 * 223.98559 * 28 21 19 44 44 H 1.09001 * 110.32019 * 102.01705 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3818 10 1 6.5987 1.5474 0.1948 11 1 6.3990 1.6166 2.6103 12 1 6.4971 -0.5175 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4343 16 6 0.0367 3.3387 -2.6543 17 1 0.1245 2.6513 -3.4958 18 6 0.8748 4.6162 -2.8925 19 6 -0.1016 5.5899 -3.5144 20 8 0.2086 6.6026 -4.1056 21 7 -1.3629 5.1697 -3.3166 22 6 -2.5006 5.8430 -3.7752 23 6 -2.3767 7.0885 -4.3771 24 6 -3.5010 7.7481 -4.8334 25 6 -4.7502 7.1748 -4.6815 26 6 -4.8774 5.9372 -4.0779 27 6 -3.7565 5.2700 -3.6242 28 6 -1.3938 3.9141 -2.5574 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2719 2.1232 -1.9977 36 1 1.2528 5.0060 -1.9474 37 1 1.6973 4.4105 -3.5776 38 1 -1.4018 7.5389 -4.4915 39 1 -3.4049 8.7149 -5.3052 40 1 -5.6283 7.6948 -5.0349 41 1 -5.8544 5.4920 -3.9612 42 1 -3.8566 4.3036 -3.1525 43 1 -2.1095 3.2222 -3.0015 44 1 -1.6528 4.1074 -1.5164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546570589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:51 Heat of formation + Delta-G solvation = -43.939027 kcal Electronic energy + Delta-G solvation = -26162.567226 eV Core-core repulsion = 22465.627734 eV Total energy + Delta-G solvation = -3696.939492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37221 -39.32879 -38.53580 -36.59391 -35.14601 -33.44077 -32.39115 -31.09434 -30.96372 -29.22921 -27.91961 -27.07784 -24.23071 -23.21220 -22.94207 -21.82576 -20.17691 -19.87884 -19.44007 -17.98082 -17.57992 -16.75844 -16.27873 -15.65313 -15.57227 -15.19602 -14.96515 -14.81860 -14.27499 -14.17725 -13.87103 -13.62727 -13.57951 -13.47011 -12.96191 -12.73820 -12.67983 -12.23018 -11.94220 -11.65769 -11.51763 -11.39735 -11.32234 -11.31310 -11.02150 -10.90806 -10.39021 -10.37258 -10.26919 -9.85635 -9.71907 -9.18565 -9.11571 -9.10939 -8.58215 -8.07592 -7.97165 -6.19700 -4.29459 1.09202 1.24420 2.41585 2.58282 3.10172 3.19307 3.27948 3.29821 3.70423 3.73104 4.09329 4.25359 4.32608 4.70655 4.77410 4.78988 4.84155 5.01117 5.12256 5.23071 5.28201 5.32839 5.39054 5.44048 5.51628 5.62787 5.81044 5.87310 6.04949 6.22656 6.30644 6.35882 6.37845 6.40919 6.56248 6.88302 6.92112 6.94053 7.09451 7.24887 7.31361 7.52515 7.63088 7.80302 7.85255 8.09432 8.50713 8.67351 8.95324 9.38162 10.85565 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.002830 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.908393 B = 9892.079973 C =10742.363727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.513 3.487 15 O -0.542 6.542 16 C -0.125 4.125 17 H 0.115 0.885 18 C -0.141 4.141 19 C 0.522 3.478 20 O -0.512 6.512 21 N -0.559 5.559 22 C 0.170 3.830 23 C -0.159 4.159 24 C -0.093 4.093 25 C -0.151 4.151 26 C -0.093 4.093 27 C -0.158 4.158 28 C 0.111 3.889 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.390 0.610 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 7.547 -12.821 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.420 6.420 16 C -0.148 4.148 17 H 0.133 0.867 18 C -0.182 4.182 19 C 0.312 3.688 20 O -0.388 6.388 21 N -0.282 5.282 22 C 0.076 3.924 23 C -0.179 4.179 24 C -0.112 4.112 25 C -0.170 4.170 26 C -0.112 4.112 27 C -0.179 4.179 28 C -0.011 4.011 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.172 0.828 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.108 0.892 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.141 7.928 -12.237 18.974 hybrid contribution 1.235 -0.226 -0.201 1.271 sum -10.906 7.702 -12.439 18.248 Atomic orbital electron populations 1.21840 0.98336 0.98139 1.01135 1.21946 0.92609 0.99746 1.02418 1.18842 0.94356 0.89219 0.80759 0.93161 1.21247 0.90608 1.39149 1.06360 0.91966 1.24880 0.98643 0.94739 0.95373 1.69895 1.35107 1.37504 1.09361 0.86410 0.84802 0.77813 0.78182 1.19705 1.20871 1.20862 1.46487 1.14227 1.55271 1.18769 1.19708 0.83235 0.79571 0.87922 1.90697 1.51373 1.59940 1.40039 1.22316 0.95120 0.97446 0.99873 0.86742 1.22349 0.98078 0.93412 1.04319 1.21048 0.83221 0.85997 0.78577 1.90615 1.80958 1.25777 1.41444 1.45901 1.05210 1.24646 1.52414 1.17833 0.85710 0.92227 0.96617 1.21660 1.01518 0.93913 1.00847 1.21050 0.92042 0.99558 0.98528 1.21111 0.97504 0.96412 1.01934 1.20930 0.97931 0.94909 0.97388 1.20848 0.90933 1.01289 1.04800 1.22198 0.96968 0.83681 0.98299 0.95794 0.93106 0.94376 0.94964 0.88218 0.92550 0.77744 0.86418 0.86595 0.82847 0.85778 0.86144 0.85693 0.85466 0.89218 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.23 2.24 -69.08 -0.15 6.07 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.26 8.73 -34.44 -0.30 -13.57 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.72 11.29 55.43 0.63 -23.10 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 N -0.70 -12.57 5.02 -54.93 -0.28 -12.85 16 14 C 0.51 8.44 5.63 -10.99 -0.06 8.37 16 15 O -0.54 -10.81 12.64 5.56 0.07 -10.74 16 16 C -0.13 -1.47 3.54 -90.14 -0.32 -1.79 16 17 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.14 -1.62 6.41 -26.74 -0.17 -1.79 16 19 C 0.52 7.08 7.92 -10.87 -0.09 7.00 16 20 O -0.51 -8.20 14.82 5.55 0.08 -8.11 16 21 N -0.56 -7.07 3.14 -112.26 -0.35 -7.42 16 22 C 0.17 2.16 6.60 -83.69 -0.55 1.60 16 23 C -0.16 -2.03 9.29 -39.39 -0.37 -2.39 16 24 C -0.09 -0.97 10.04 -39.61 -0.40 -1.37 16 25 C -0.15 -1.39 10.04 -39.55 -0.40 -1.79 16 26 C -0.09 -0.87 10.04 -39.61 -0.40 -1.27 16 27 C -0.16 -1.70 9.42 -39.40 -0.37 -2.07 16 28 C 0.11 1.29 5.87 -3.12 -0.02 1.27 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.04 0.73 5.64 -51.93 -0.29 0.44 16 32 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 34 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.39 5.99 8.54 -40.82 -0.35 5.64 16 36 H 0.12 1.45 7.89 -51.93 -0.41 1.04 16 37 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.15 2.18 5.26 -52.49 -0.28 1.90 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.13 1.19 6.75 -52.48 -0.35 0.84 16 43 H 0.09 0.88 7.24 -51.93 -0.38 0.50 16 44 H 0.10 1.39 6.96 -51.93 -0.36 1.03 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -29.95 355.22 -9.06 -39.01 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.03 Total: 8.63 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.52 Total: -5.64 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.00 Total: -43.36 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.15 Total: -18.85 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.95 -9.06 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.925 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds