Wall clock time and date at job start Tue Mar 31 2020 11:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08995 * 109.46664 * 55.00577 * 3 2 1 5 5 C 1.50703 * 109.46975 * 174.99941 * 3 2 1 6 6 H 1.08000 * 119.99761 * 120.00377 * 5 3 2 7 7 C 1.37874 * 120.00093 * 300.00099 * 5 3 2 8 8 N 1.31514 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47151 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47275 * 120.00297 * 9 7 5 12 12 H 1.48506 * 109.47235 * 240.00267 * 9 7 5 13 13 N 1.46500 * 109.47235 * 295.00097 * 3 2 1 14 14 C 1.34780 * 119.99899 * 84.99948 * 13 3 2 15 15 O 1.21278 * 119.99668 * 359.97438 * 14 13 3 16 16 C 1.50691 * 119.99746 * 179.97438 * 14 13 3 17 17 H 1.09005 * 110.85883 * 56.21096 * 16 14 13 18 18 C 1.54634 * 110.97186 * 292.37676 * 16 14 13 19 19 C 1.51275 * 104.19773 * 217.08543 * 18 16 14 20 20 O 1.21288 * 124.94417 * 196.25246 * 19 18 16 21 21 N 1.34416 * 110.11865 * 16.25148 * 19 18 16 22 22 C 1.39924 * 124.35662 * 180.38670 * 21 19 18 23 23 C 1.38880 * 120.06548 * 354.02488 * 22 21 19 24 24 C 1.38115 * 119.92505 * 179.74301 * 23 22 21 25 25 C 1.38282 * 120.07097 * 0.53845 * 24 23 22 26 26 C 1.38278 * 120.14103 * 359.71523 * 25 24 23 27 27 C 1.38113 * 120.07134 * 0.02562 * 26 25 24 28 28 C 1.46769 * 111.30080 * 0.41034 * 21 19 18 29 29 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46912 * 299.99967 * 1 2 3 31 31 H 1.08999 * 109.46871 * 59.99767 * 1 2 3 32 32 H 1.09008 * 109.47027 * 240.00469 * 2 1 3 33 33 H 1.09000 * 109.47332 * 120.00497 * 2 1 3 34 34 H 0.97002 * 119.99973 * 179.97438 * 8 7 5 35 35 H 0.96993 * 119.99784 * 264.99793 * 13 3 2 36 36 H 1.08994 * 110.48333 * 335.76889 * 18 16 14 37 37 H 1.09005 * 110.47937 * 98.40662 * 18 16 14 38 38 H 1.07998 * 120.03372 * 359.97438 * 23 22 21 39 39 H 1.08003 * 119.95912 * 180.25265 * 24 23 22 40 40 H 1.07997 * 119.92944 * 179.70287 * 25 24 23 41 41 H 1.08003 * 119.96130 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03268 * 179.97438 * 27 26 25 43 43 H 1.09004 * 110.24589 * 223.98559 * 28 21 19 44 44 H 1.09001 * 110.32019 * 102.01705 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3818 10 1 6.5987 1.5474 0.1948 11 1 6.3990 1.6166 2.6103 12 1 6.4971 -0.5175 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4343 16 6 0.0367 3.3387 -2.6543 17 1 0.1245 2.6513 -3.4958 18 6 0.8748 4.6162 -2.8925 19 6 -0.1016 5.5899 -3.5144 20 8 0.2086 6.6026 -4.1056 21 7 -1.3629 5.1697 -3.3166 22 6 -2.5006 5.8430 -3.7752 23 6 -2.3767 7.0885 -4.3771 24 6 -3.5010 7.7481 -4.8334 25 6 -4.7502 7.1748 -4.6815 26 6 -4.8774 5.9372 -4.0779 27 6 -3.7565 5.2700 -3.6242 28 6 -1.3938 3.9141 -2.5574 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2719 2.1232 -1.9977 36 1 1.2528 5.0060 -1.9474 37 1 1.6973 4.4105 -3.5776 38 1 -1.4018 7.5389 -4.4915 39 1 -3.4049 8.7149 -5.3052 40 1 -5.6283 7.6948 -5.0349 41 1 -5.8544 5.4920 -3.9612 42 1 -3.8566 4.3036 -3.1525 43 1 -2.1095 3.2222 -3.0015 44 1 -1.6528 4.1074 -1.5164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546570589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:50 Heat of formation + Delta-G solvation = -61.598376 kcal Electronic energy + Delta-G solvation = -26163.332992 eV Core-core repulsion = 22465.627734 eV Total energy + Delta-G solvation = -3697.705259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38081 -40.63137 -39.47388 -37.74792 -36.78297 -34.55890 -34.06606 -32.60343 -31.88258 -30.20348 -28.95829 -28.78339 -25.56156 -24.49965 -24.05806 -22.84211 -21.65828 -20.95171 -20.86375 -19.17264 -18.70137 -18.00581 -17.45427 -17.20215 -16.66737 -16.50051 -16.23013 -16.01608 -15.63996 -15.18209 -14.97677 -14.72647 -14.58683 -14.57703 -14.29042 -14.16822 -13.74205 -13.55602 -13.36536 -13.13678 -12.88326 -12.80613 -12.69273 -12.46343 -12.42131 -12.11989 -12.08838 -11.99872 -11.53157 -11.27250 -10.99963 -10.93407 -10.59728 -10.46688 -9.91507 -9.59944 -8.96327 -8.14134 -6.30150 0.23949 0.43690 1.43162 1.44585 1.47407 1.57407 1.63200 1.79088 2.34966 2.55768 2.88713 3.09303 3.16029 3.27946 3.73623 3.83091 3.98373 4.06082 4.21437 4.28272 4.38881 4.48281 4.52460 4.56019 4.56066 4.63109 4.64268 4.72415 4.82575 4.86228 5.10615 5.12630 5.20736 5.32942 5.43720 5.49025 5.55543 5.61239 5.62041 5.65587 5.85050 5.95606 5.96036 6.09839 6.21940 6.79093 6.84402 6.99801 7.36848 7.58888 8.90987 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.002830 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.908393 B = 9892.079973 C =10742.363727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.281 1.281 13 N -0.698 5.698 14 C 0.514 3.486 15 O -0.578 6.578 16 C -0.107 4.107 17 H 0.152 0.848 18 C -0.134 4.134 19 C 0.515 3.485 20 O -0.544 6.544 21 N -0.557 5.557 22 C 0.142 3.858 23 C -0.183 4.183 24 C -0.099 4.099 25 C -0.146 4.146 26 C -0.092 4.092 27 C -0.163 4.163 28 C 0.113 3.887 29 H 0.042 0.958 30 H 0.025 0.975 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.107 0.893 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 7.382 -14.998 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.207 1.207 13 N -0.346 5.346 14 C 0.300 3.700 15 O -0.458 6.458 16 C -0.129 4.129 17 H 0.170 0.830 18 C -0.174 4.174 19 C 0.306 3.694 20 O -0.422 6.422 21 N -0.279 5.279 22 C 0.049 3.951 23 C -0.203 4.203 24 C -0.117 4.117 25 C -0.165 4.165 26 C -0.111 4.111 27 C -0.183 4.183 28 C -0.009 4.009 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.125 0.875 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.158 0.842 43 H 0.133 0.867 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.040 7.770 -14.452 20.959 hybrid contribution 1.383 -0.101 0.484 1.469 sum -11.658 7.669 -13.969 19.744 Atomic orbital electron populations 1.21684 0.96720 0.99165 1.00520 1.21791 0.93979 0.99114 1.01280 1.18365 0.93422 0.89250 0.81479 0.98109 1.21628 0.91664 1.38430 1.06443 0.90898 1.25698 1.02787 0.94636 0.95264 1.70046 1.36781 1.38567 1.09922 0.85421 0.79850 0.77677 0.78125 1.18405 1.21398 1.20698 1.46196 1.15357 1.55463 1.17630 1.20373 0.82047 0.78577 0.89040 1.90695 1.52288 1.60971 1.41878 1.22203 0.95045 0.97669 0.97941 0.83018 1.22351 0.98323 0.92514 1.04252 1.21362 0.83878 0.85871 0.78294 1.90604 1.81493 1.27105 1.43011 1.45937 1.05139 1.24764 1.52049 1.18103 0.86424 0.92694 0.97859 1.21638 1.01497 0.94666 1.02523 1.21315 0.91959 1.00233 0.98219 1.21494 0.97886 0.96367 1.00756 1.21347 0.98749 0.94806 0.96157 1.21097 0.90563 1.01940 1.04711 1.22193 0.97436 0.83808 0.97438 0.93852 0.95586 0.93038 0.93900 0.91389 0.92752 0.75875 0.87480 0.83979 0.85015 0.84071 0.83216 0.82791 0.84185 0.86711 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.12 -5.58 5.45 30.60 0.17 -5.41 16 3 C 0.28 13.03 2.24 44.25 0.10 13.13 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 5 C -0.54 -26.92 8.73 25.60 0.22 -26.69 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -50.56 11.29 21.45 0.24 -50.32 16 9 Si 0.96 40.77 29.54 68.60 2.03 42.79 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 13 N -0.70 -24.42 5.02 -446.10 -2.24 -26.66 16 14 C 0.51 16.44 5.63 87.65 0.49 16.93 16 15 O -0.58 -23.22 12.64 -3.02 -0.04 -23.25 16 16 C -0.11 -2.28 3.54 -10.48 -0.04 -2.32 16 17 H 0.15 2.22 8.14 -2.38 -0.02 2.20 16 18 C -0.13 -2.90 6.41 30.59 0.20 -2.70 16 19 C 0.52 13.81 7.92 87.90 0.70 14.51 16 20 O -0.54 -17.75 14.82 -3.05 -0.05 -17.80 16 21 N -0.56 -13.68 3.14 -627.67 -1.97 -15.65 16 22 C 0.14 3.52 6.60 38.15 0.25 3.77 16 23 C -0.18 -4.68 9.29 22.39 0.21 -4.47 16 24 C -0.10 -1.93 10.04 22.25 0.22 -1.71 16 25 C -0.15 -2.30 10.04 22.29 0.22 -2.08 16 26 C -0.09 -1.46 10.04 22.25 0.22 -1.24 16 27 C -0.16 -3.20 9.42 22.39 0.21 -2.99 16 28 C 0.11 2.46 5.87 86.83 0.51 2.97 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 31 H 0.05 1.93 5.64 -2.39 -0.01 1.91 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 3.56 5.95 -2.39 -0.01 3.55 16 34 H 0.26 13.88 8.31 -92.71 -0.77 13.10 16 35 H 0.41 11.62 8.54 -92.71 -0.79 10.83 16 36 H 0.11 2.59 7.89 -2.39 -0.02 2.57 16 37 H 0.14 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.13 3.93 5.26 -2.91 -0.02 3.91 16 39 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 2.29 6.75 -2.91 -0.02 2.27 16 43 H 0.11 1.93 7.24 -2.39 -0.02 1.91 16 44 H 0.08 2.23 6.96 -2.39 -0.02 2.21 16 Total: -1.00 -67.94 355.22 2.96 -64.98 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.24 Total: 27.32 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.75 Total: -1.42 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -3.97 Total: -92.62 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.08 Total: -41.05 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -67.94 2.96 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.379 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds