Wall clock time and date at job start Tue Mar 31 2020 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47332 * 2 1 4 4 H 1.08992 * 109.47482 * 305.00525 * 3 2 1 5 5 C 1.50697 * 109.47437 * 184.99885 * 3 2 1 6 6 H 1.08000 * 120.00467 * 240.00582 * 5 3 2 7 7 C 1.37880 * 120.00042 * 59.99909 * 5 3 2 8 8 N 1.31507 * 120.00408 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99764 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46972 * 269.99817 * 9 7 5 11 11 H 1.48504 * 109.47353 * 149.99506 * 9 7 5 12 12 H 1.48498 * 109.47126 * 29.99614 * 9 7 5 13 13 N 1.46500 * 109.46792 * 65.00039 * 3 2 1 14 14 C 1.34779 * 120.00192 * 274.99916 * 13 3 2 15 15 O 1.21279 * 119.99929 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00154 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.85946 * 303.79376 * 16 14 13 18 18 C 1.54630 * 110.96748 * 67.62290 * 16 14 13 19 19 C 1.51287 * 104.19495 * 93.32233 * 18 16 14 20 20 O 1.21288 * 124.94030 * 196.25276 * 19 18 16 21 21 N 1.34417 * 110.11592 * 16.25102 * 19 18 16 22 22 C 1.39923 * 124.34998 * 180.38880 * 21 19 18 23 23 C 1.38868 * 120.06960 * 354.02698 * 22 21 19 24 24 C 1.38116 * 119.92732 * 179.72183 * 23 22 21 25 25 C 1.38279 * 120.06986 * 0.57614 * 24 23 22 26 26 C 1.38280 * 120.14461 * 359.67376 * 25 24 23 27 27 C 1.38123 * 120.06588 * 0.04580 * 26 25 24 28 28 C 1.46768 * 111.29855 * 0.40765 * 21 19 18 29 29 H 1.09004 * 109.47080 * 300.00059 * 1 2 3 30 30 H 1.09001 * 109.47321 * 59.99507 * 1 2 3 31 31 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47205 * 240.00466 * 2 1 3 33 33 H 1.08995 * 109.47511 * 120.00085 * 2 1 3 34 34 H 0.96994 * 120.00777 * 180.02562 * 8 7 5 35 35 H 0.97008 * 120.00255 * 94.99762 * 13 3 2 36 36 H 1.08998 * 110.48896 * 211.99397 * 18 16 14 37 37 H 1.09000 * 110.49216 * 334.64344 * 18 16 14 38 38 H 1.08001 * 120.03606 * 359.97438 * 23 22 21 39 39 H 1.08007 * 119.96563 * 180.25111 * 24 23 22 40 40 H 1.08005 * 119.93108 * 179.70714 * 25 24 23 41 41 H 1.07998 * 119.97212 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.03027 * 179.97438 * 27 26 25 43 43 H 1.09005 * 110.24488 * 223.98043 * 28 21 19 44 44 H 1.08999 * 110.24344 * 101.98801 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 5.4539 0.8804 -1.3363 9 14 3.0963 0.1101 -2.5707 10 1 2.8744 -1.3260 -2.2645 11 1 3.7940 0.2361 -3.8755 12 1 1.7881 0.8094 -2.6394 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3396 2.6320 0.4345 16 6 0.0362 3.3376 2.6549 17 1 0.1237 2.6495 3.4958 18 6 0.8744 4.6147 2.8944 19 6 0.0355 5.7256 2.3021 20 8 0.4433 6.8353 2.0315 21 7 -1.2277 5.3038 2.1195 22 6 -2.2524 6.0898 1.5808 23 6 -2.0295 7.4334 1.3100 24 6 -3.0413 8.2051 0.7730 25 6 -4.2787 7.6440 0.5160 26 6 -4.5055 6.3076 0.7894 27 6 -3.4960 5.5291 1.3211 28 6 -1.3940 3.9131 2.5580 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.8770 0.4827 -2.1132 35 1 2.2719 2.1230 1.9979 36 1 1.0248 4.7778 3.9616 37 1 1.8326 4.5444 2.3796 38 1 -1.0649 7.8735 1.5153 39 1 -2.8674 9.2493 0.5583 40 1 -5.0698 8.2507 0.1005 41 1 -5.4728 5.8721 0.5873 42 1 -3.6738 4.4855 1.5347 43 1 -1.9769 3.3539 1.8260 44 1 -1.8806 3.8807 3.5328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546570590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:55 Heat of formation + Delta-G solvation = -57.303847 kcal Electronic energy + Delta-G solvation = -26752.177305 eV Core-core repulsion = 23054.658271 eV Total energy + Delta-G solvation = -3697.519034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41343 -40.65800 -39.46216 -37.80427 -36.87137 -34.60754 -34.23510 -32.96695 -31.88691 -30.21996 -29.32085 -28.83499 -25.44851 -24.34829 -24.05250 -23.09341 -21.90453 -21.03971 -20.87035 -19.30127 -18.79380 -18.13177 -17.49829 -17.40733 -16.83184 -16.54603 -16.30457 -16.01852 -15.73657 -15.21068 -15.05847 -14.83255 -14.73126 -14.51578 -14.31207 -14.16247 -13.94991 -13.71355 -13.52411 -13.27123 -13.01631 -12.93815 -12.74617 -12.60932 -12.47820 -12.35679 -12.09470 -11.86167 -11.37658 -11.27885 -11.22126 -10.87526 -10.77380 -10.63444 -9.92186 -9.75727 -8.93361 -8.39218 -6.44157 0.25535 0.42787 1.24207 1.33518 1.42058 1.45257 1.71587 1.79601 2.24099 2.39161 2.88971 2.97014 3.12657 3.27034 3.68299 3.86244 3.97813 4.06367 4.26495 4.28914 4.33415 4.35044 4.45820 4.48097 4.51418 4.53145 4.60065 4.67914 4.74581 4.81036 4.87674 5.05020 5.09749 5.15449 5.22452 5.24835 5.42079 5.44202 5.54749 5.56568 5.60611 5.67070 6.02570 6.10398 6.13401 6.59079 6.87768 6.90250 7.19234 7.47430 8.75940 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.003519 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.567876 B = 7954.885887 C = 8210.255934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.014 0.986 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.257 1.257 11 H -0.297 1.297 12 H -0.264 1.264 13 N -0.695 5.695 14 C 0.502 3.498 15 O -0.576 6.576 16 C -0.109 4.109 17 H 0.181 0.819 18 C -0.135 4.135 19 C 0.501 3.499 20 O -0.556 6.556 21 N -0.556 5.556 22 C 0.147 3.853 23 C -0.189 4.189 24 C -0.101 4.101 25 C -0.149 4.149 26 C -0.093 4.093 27 C -0.161 4.161 28 C 0.108 3.892 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.164 0.836 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.770 5.500 12.523 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.032 0.968 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.182 1.182 11 H -0.225 1.225 12 H -0.189 1.189 13 N -0.345 5.345 14 C 0.289 3.711 15 O -0.457 6.457 16 C -0.130 4.130 17 H 0.199 0.801 18 C -0.175 4.175 19 C 0.292 3.708 20 O -0.435 6.435 21 N -0.278 5.278 22 C 0.053 3.947 23 C -0.210 4.210 24 C -0.120 4.120 25 C -0.168 4.168 26 C -0.112 4.112 27 C -0.181 4.181 28 C -0.013 4.013 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.182 0.818 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.112 0.888 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.914 5.965 11.623 23.817 hybrid contribution 0.797 -0.219 -0.975 1.278 sum -19.116 5.746 10.648 22.624 Atomic orbital electron populations 1.21755 0.94948 1.00579 1.01697 1.22187 0.96052 0.98182 1.01090 1.18732 0.92979 0.89815 0.83936 0.96804 1.21330 0.90546 1.38266 1.06895 0.92311 1.25534 0.95650 0.96047 0.99829 1.69967 1.10250 1.46239 1.30816 0.86066 0.79142 0.80099 0.78436 1.18219 1.22478 1.18930 1.45940 1.15817 1.55786 1.16912 1.20919 0.81717 0.78332 0.90162 1.90690 1.52344 1.60705 1.41923 1.22436 0.95078 0.97816 0.97691 0.80134 1.22454 0.98523 0.90070 1.06421 1.21770 0.82943 0.89018 0.77092 1.90597 1.75944 1.24022 1.52901 1.45937 1.08766 1.14798 1.58324 1.18088 0.88777 0.90627 0.97233 1.21643 1.01907 0.93259 1.04164 1.21301 0.92940 1.00450 0.97262 1.21475 0.97446 0.95991 1.01866 1.21358 0.99396 0.93866 0.96537 1.21088 0.91721 1.01264 1.04059 1.22459 0.96915 0.78587 1.03365 0.91796 0.95070 0.92330 0.94331 0.90767 0.92164 0.75488 0.81799 0.87982 0.85375 0.84292 0.83215 0.82692 0.84041 0.88785 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.51 71.98 0.61 -4.05 16 2 C -0.14 -5.52 5.11 30.59 0.16 -5.36 16 3 C 0.25 11.22 1.83 44.25 0.08 11.30 16 4 H 0.01 0.73 6.63 -2.39 -0.02 0.72 16 5 C -0.53 -28.23 9.31 25.60 0.24 -27.99 16 6 H 0.06 3.30 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.63 5.45 84.66 0.46 2.09 16 8 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 9 Si 0.93 44.75 24.41 68.60 1.67 46.42 16 10 H -0.26 -11.42 6.83 99.48 0.68 -10.74 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.26 -12.69 6.53 99.48 0.65 -12.04 16 13 N -0.70 -23.77 4.95 -446.11 -2.21 -25.98 16 14 C 0.50 15.36 5.65 87.66 0.50 15.85 16 15 O -0.58 -22.26 12.67 -3.03 -0.04 -22.30 16 16 C -0.11 -1.95 3.54 -10.49 -0.04 -1.99 16 17 H 0.18 1.38 8.14 -2.39 -0.02 1.36 16 18 C -0.13 -2.66 6.40 30.59 0.20 -2.46 16 19 C 0.50 14.69 7.92 87.90 0.70 15.39 16 20 O -0.56 -20.70 14.82 -3.05 -0.05 -20.75 16 21 N -0.56 -14.54 3.14 -627.69 -1.97 -16.51 16 22 C 0.15 4.07 6.60 38.15 0.25 4.32 16 23 C -0.19 -5.59 9.29 22.39 0.21 -5.38 16 24 C -0.10 -2.35 10.04 22.25 0.22 -2.12 16 25 C -0.15 -2.81 10.04 22.29 0.22 -2.59 16 26 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 27 C -0.16 -3.59 9.42 22.39 0.21 -3.38 16 28 C 0.11 1.95 5.84 86.83 0.51 2.46 16 29 H 0.06 2.07 5.64 -2.38 -0.01 2.05 16 30 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.68 3.22 -2.39 -0.01 1.67 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.41 11.75 8.54 -92.70 -0.79 10.96 16 36 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 2.40 7.84 -2.39 -0.02 2.38 16 38 H 0.13 4.39 5.26 -2.91 -0.02 4.37 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 42 H 0.14 2.59 6.75 -2.91 -0.02 2.57 16 43 H 0.09 1.98 6.11 -2.38 -0.01 1.97 16 44 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.32 348.41 2.62 -75.70 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.16 Total: 24.32 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 4.75 Total: -5.41 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.88 Total: -97.98 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.08 Total: -43.05 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.42 kcal Total: -78.32 2.62 -75.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.395 kcal (2) G-P(sol) polarization free energy of solvation -78.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds