Wall clock time and date at job start Tue Mar 31 2020 10:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 H 1.08993 * 109.46664 * 305.00019 * 3 2 1 5 5 C 1.53001 * 109.47003 * 64.99633 * 3 2 1 6 6 C 1.53001 * 109.46865 * 184.99882 * 3 2 1 7 7 H 1.08996 * 110.53248 * 302.82425 * 6 3 2 8 8 N 1.47305 * 110.73135 * 65.74834 * 6 3 2 9 9 C 1.34532 * 106.61813 * 118.36409 * 8 6 3 10 10 O 1.21538 * 123.77229 * 180.20386 * 9 8 6 11 11 N 1.33793 * 112.45510 * 0.38692 * 9 8 6 12 12 C 1.46499 * 124.17374 * 179.86535 * 11 9 8 13 13 C 1.50699 * 109.46985 * 269.69285 * 12 11 9 14 14 C 1.38635 * 119.75071 * 90.00434 * 13 12 11 15 15 C 1.37613 * 120.24981 * 180.02562 * 14 13 12 16 16 C 1.40709 * 119.74616 * 359.97438 * 15 14 13 17 17 C 1.41402 * 120.24297 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00108 * 25.62424 * 17 16 15 19 19 C 1.39948 * 119.99923 * 205.62351 * 17 16 15 20 20 N 1.30817 * 120.00049 * 200.09959 * 19 17 16 21 21 Si 1.86802 * 120.00000 * 20.09903 * 19 17 16 22 22 H 1.48497 * 109.47210 * 264.67992 * 21 19 17 23 23 H 1.48500 * 109.47157 * 144.67988 * 21 19 17 24 24 H 1.48504 * 109.46993 * 24.67824 * 21 19 17 25 25 C 1.40711 * 119.51588 * 0.27597 * 16 15 14 26 26 C 1.37626 * 119.73773 * 359.44533 * 25 16 15 27 27 C 1.34758 * 111.64674 * 359.59012 * 11 9 8 28 28 O 1.21233 * 127.16174 * 180.26939 * 27 11 9 29 29 H 1.08997 * 109.47539 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47657 * 300.00599 * 1 2 3 31 31 H 1.09004 * 109.47103 * 59.99927 * 1 2 3 32 32 H 1.08996 * 109.47233 * 239.99304 * 2 1 3 33 33 H 1.09004 * 109.46583 * 119.99993 * 2 1 3 34 34 H 1.09004 * 109.46862 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47249 * 300.00008 * 5 3 2 36 36 H 1.09002 * 109.46914 * 60.00434 * 5 3 2 37 37 H 0.97001 * 126.69050 * 298.55335 * 8 6 3 38 38 H 1.09004 * 109.47365 * 149.70097 * 12 11 9 39 39 H 1.08993 * 109.47603 * 29.69427 * 12 11 9 40 40 H 1.08000 * 119.87393 * 0.03794 * 14 13 12 41 41 H 1.08009 * 120.12734 * 179.97438 * 15 14 13 42 42 H 0.97006 * 120.00158 * 5.10921 * 20 19 17 43 43 H 1.07994 * 120.13347 * 179.72638 * 25 16 15 44 44 H 1.08000 * 119.87342 * 180.27504 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 4.0156 0.8667 0.6813 8 7 3.9806 0.9157 -1.4363 9 6 4.6394 1.9089 -2.0603 10 8 5.1171 1.8079 -3.1733 11 7 4.7134 3.0189 -1.3171 12 6 5.3759 4.2534 -1.7454 13 6 6.8216 4.2207 -1.3213 14 6 7.7763 3.6854 -2.1722 15 6 9.0992 3.6499 -1.7951 16 6 9.4816 4.1602 -0.5408 17 6 10.8381 4.1296 -0.1429 18 1 11.6194 4.1179 -0.8884 19 6 11.1683 4.1146 1.2170 20 7 12.3643 4.4768 1.6038 21 14 9.9010 3.5773 2.4799 22 1 9.2132 4.7726 3.0305 23 1 10.5782 2.8452 3.5802 24 1 8.9041 2.6868 1.8329 25 6 8.5034 4.6964 0.3169 26 6 7.1870 4.7268 -0.0834 27 6 4.0981 2.8632 -0.1284 28 8 3.9923 3.6868 0.7550 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.9982 3.1544 1.3071 35 1 0.5488 2.1253 1.3968 36 1 2.0698 1.5875 2.1492 37 1 3.8100 0.0259 -1.7830 38 1 4.8817 5.1093 -1.2858 39 1 5.3174 4.3395 -2.8304 40 1 7.4806 3.2948 -3.1347 41 1 9.8413 3.2320 -2.4594 42 1 12.9980 4.8259 0.9577 43 1 8.7851 5.0867 1.2836 44 1 6.4351 5.1419 0.5713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569103293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:07 Heat of formation + Delta-G solvation = -46.084289 kcal Electronic energy + Delta-G solvation = -26676.402340 eV Core-core repulsion = 22979.369823 eV Total energy + Delta-G solvation = -3697.032517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33489 -38.50424 -38.05158 -37.14772 -35.61453 -34.50142 -33.48906 -30.86466 -30.38758 -29.72216 -27.53185 -26.84888 -24.62394 -23.59219 -22.58292 -21.60120 -20.68783 -20.48621 -19.75066 -18.18327 -17.95354 -17.07306 -16.50324 -15.62179 -15.41009 -15.32192 -15.06477 -14.46321 -14.38444 -14.23253 -14.15187 -13.85966 -13.61778 -13.26595 -12.84698 -12.80880 -12.33299 -12.25657 -12.03066 -12.02079 -11.70739 -11.64154 -11.37288 -11.18211 -11.02806 -10.95090 -10.77950 -10.54296 -10.13639 -9.96524 -9.88122 -9.51183 -9.37673 -9.28445 -9.09997 -7.75246 -7.67073 -7.37781 -4.60994 1.75507 2.17036 2.70602 2.76063 3.15951 3.21230 3.22349 3.35253 3.53382 3.97127 3.99294 4.26499 4.44233 4.46831 4.66888 4.83574 5.05699 5.15821 5.20265 5.28477 5.33176 5.36249 5.60682 5.62693 5.66990 5.69340 5.75308 5.79149 5.80962 5.95847 6.06840 6.14044 6.14759 6.17866 6.55068 6.77218 6.83542 6.98785 7.22602 7.31967 7.43594 7.53172 7.54940 7.72055 7.81312 7.96251 8.27417 8.35186 8.50804 8.70576 9.91592 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.003741 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.024029 B = 7483.678939 C = 8213.535931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.080 0.920 5 C -0.158 4.158 6 C 0.094 3.906 7 H 0.124 0.876 8 N -0.730 5.730 9 C 0.703 3.297 10 O -0.543 6.543 11 N -0.566 5.566 12 C 0.181 3.819 13 C -0.260 4.260 14 C -0.050 4.050 15 C -0.223 4.223 16 C 0.104 3.896 17 C -0.508 4.508 18 H 0.078 0.922 19 C 0.044 3.956 20 N -0.809 5.809 21 Si 1.074 2.926 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.263 1.263 25 C -0.252 4.252 26 C -0.046 4.046 27 C 0.526 3.474 28 O -0.465 6.465 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.435 0.565 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.288 0.712 43 H 0.102 0.898 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.130 -7.596 -0.947 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 H 0.098 0.902 5 C -0.216 4.216 6 C -0.016 4.016 7 H 0.141 0.859 8 N -0.394 5.394 9 C 0.404 3.596 10 O -0.416 6.416 11 N -0.311 5.311 12 C 0.063 3.937 13 C -0.262 4.262 14 C -0.069 4.069 15 C -0.243 4.243 16 C 0.101 3.899 17 C -0.536 4.536 18 H 0.096 0.904 19 C -0.177 4.177 20 N -0.430 5.430 21 Si 0.901 3.099 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.188 1.188 25 C -0.271 4.271 26 C -0.065 4.065 27 C 0.312 3.688 28 O -0.335 6.335 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.279 0.721 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.949 -7.333 0.496 22.201 hybrid contribution 0.521 -0.106 -1.847 1.922 sum -20.429 -7.439 -1.351 21.783 Atomic orbital electron populations 1.21800 0.95261 1.01776 1.02172 1.21564 0.96521 0.95115 1.02344 1.21342 0.90906 0.97978 1.00437 0.90202 1.21997 1.01620 1.02306 0.95630 1.22187 0.97413 0.93669 0.88299 0.85899 1.45558 1.60280 1.15627 1.17953 1.15951 0.78880 0.80624 0.84175 1.90980 1.51165 1.81762 1.17705 1.46888 1.51367 1.15304 1.17511 1.20353 0.90948 0.82147 1.00252 1.19066 0.92719 1.16035 0.98381 1.20581 0.93112 0.95945 0.97218 1.20969 0.94805 1.09166 0.99317 1.17798 0.93086 0.87542 0.91512 1.20753 0.92884 1.45272 0.94648 0.90383 1.27339 0.99435 0.91572 0.99333 1.70537 1.06189 1.26388 1.39879 0.83561 0.74154 0.77930 0.74300 1.20356 1.21783 1.18758 1.20965 0.93624 1.11104 1.01395 1.20517 0.95337 0.96361 0.94305 1.20695 0.77112 0.89249 0.81739 1.90747 1.55947 1.48632 1.38177 0.92603 0.92178 0.92707 0.91872 0.91287 0.90556 0.91838 0.92036 0.72120 0.89483 0.89346 0.88374 0.88524 0.90094 0.88064 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.15 0.36 -0.48 16 2 C -0.12 -0.70 5.36 -26.73 -0.14 -0.85 16 3 C -0.09 -0.69 2.20 -90.62 -0.20 -0.89 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.16 -1.29 8.61 37.16 0.32 -0.97 16 6 C 0.09 0.96 3.21 -68.21 -0.22 0.74 16 7 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 8 N -0.73 -7.90 5.95 -59.19 -0.35 -8.26 16 9 C 0.70 10.83 8.62 -88.01 -0.76 10.07 16 10 O -0.54 -10.08 17.48 5.33 0.09 -9.99 16 11 N -0.57 -8.93 2.59 -122.02 -0.32 -9.25 16 12 C 0.18 3.07 5.82 -5.19 -0.03 3.04 16 13 C -0.26 -5.40 5.49 -104.33 -0.57 -5.97 16 14 C -0.05 -1.10 9.67 -39.66 -0.38 -1.48 16 15 C -0.22 -5.42 9.80 -38.88 -0.38 -5.80 16 16 C 0.10 2.70 5.20 -106.83 -0.56 2.15 16 17 C -0.51 -13.82 9.44 -37.74 -0.36 -14.17 16 18 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 19 C 0.04 1.16 5.40 -17.34 -0.09 1.07 16 20 N -0.81 -21.76 13.65 55.55 0.76 -21.01 16 21 Si 1.07 24.86 24.83 -169.99 -4.22 20.64 16 22 H -0.28 -6.12 6.64 56.52 0.38 -5.75 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.26 -6.14 6.84 56.52 0.39 -5.76 16 25 C -0.25 -6.21 7.21 -38.87 -0.28 -6.49 16 26 C -0.05 -1.03 9.67 -39.66 -0.38 -1.41 16 27 C 0.53 7.57 7.38 -10.56 -0.08 7.49 16 28 O -0.47 -7.58 15.62 5.60 0.09 -7.49 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 7.23 -51.93 -0.38 -0.03 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 35 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.43 3.53 8.29 -40.82 -0.34 3.19 16 38 H 0.09 1.35 7.94 -51.93 -0.41 0.94 16 39 H 0.09 1.42 7.79 -51.93 -0.40 1.01 16 40 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 41 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.29 7.51 8.73 -40.82 -0.36 7.15 16 43 H 0.10 2.48 4.26 -52.49 -0.22 2.26 16 44 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -30.44 357.81 -8.48 -38.92 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.17 Total: 5.01 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -3.75 Total: -13.96 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.09 Total: -38.51 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -4.22 Total: 20.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.44 -8.48 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569103293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.168 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds