Wall clock time and date at job start Tue Mar 31 2020 10:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 H 1.08993 * 109.46664 * 305.00019 * 3 2 1 5 5 C 1.53001 * 109.47003 * 64.99633 * 3 2 1 6 6 C 1.53001 * 109.46865 * 184.99882 * 3 2 1 7 7 H 1.08996 * 110.53248 * 302.82425 * 6 3 2 8 8 N 1.47305 * 110.73135 * 65.74834 * 6 3 2 9 9 C 1.34532 * 106.61813 * 118.36409 * 8 6 3 10 10 O 1.21538 * 123.77229 * 180.20386 * 9 8 6 11 11 N 1.33793 * 112.45510 * 0.38692 * 9 8 6 12 12 C 1.46499 * 124.17374 * 179.86535 * 11 9 8 13 13 C 1.50699 * 109.46985 * 269.69285 * 12 11 9 14 14 C 1.38635 * 119.75071 * 90.00434 * 13 12 11 15 15 C 1.37613 * 120.24981 * 180.02562 * 14 13 12 16 16 C 1.40709 * 119.74616 * 359.97438 * 15 14 13 17 17 C 1.41402 * 120.24297 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00108 * 25.62424 * 17 16 15 19 19 C 1.39948 * 119.99923 * 205.62351 * 17 16 15 20 20 N 1.30817 * 120.00049 * 200.09959 * 19 17 16 21 21 Si 1.86802 * 120.00000 * 20.09903 * 19 17 16 22 22 H 1.48497 * 109.47210 * 264.67992 * 21 19 17 23 23 H 1.48500 * 109.47157 * 144.67988 * 21 19 17 24 24 H 1.48504 * 109.46993 * 24.67824 * 21 19 17 25 25 C 1.40711 * 119.51588 * 0.27597 * 16 15 14 26 26 C 1.37626 * 119.73773 * 359.44533 * 25 16 15 27 27 C 1.34758 * 111.64674 * 359.59012 * 11 9 8 28 28 O 1.21233 * 127.16174 * 180.26939 * 27 11 9 29 29 H 1.08997 * 109.47539 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47657 * 300.00599 * 1 2 3 31 31 H 1.09004 * 109.47103 * 59.99927 * 1 2 3 32 32 H 1.08996 * 109.47233 * 239.99304 * 2 1 3 33 33 H 1.09004 * 109.46583 * 119.99993 * 2 1 3 34 34 H 1.09004 * 109.46862 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47249 * 300.00008 * 5 3 2 36 36 H 1.09002 * 109.46914 * 60.00434 * 5 3 2 37 37 H 0.97001 * 126.69050 * 298.55335 * 8 6 3 38 38 H 1.09004 * 109.47365 * 149.70097 * 12 11 9 39 39 H 1.08993 * 109.47603 * 29.69427 * 12 11 9 40 40 H 1.08000 * 119.87393 * 0.03794 * 14 13 12 41 41 H 1.08009 * 120.12734 * 179.97438 * 15 14 13 42 42 H 0.97006 * 120.00158 * 5.10921 * 20 19 17 43 43 H 1.07994 * 120.13347 * 179.72638 * 25 16 15 44 44 H 1.08000 * 119.87342 * 180.27504 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 4.0156 0.8667 0.6813 8 7 3.9806 0.9157 -1.4363 9 6 4.6394 1.9089 -2.0603 10 8 5.1171 1.8079 -3.1733 11 7 4.7134 3.0189 -1.3171 12 6 5.3759 4.2534 -1.7454 13 6 6.8216 4.2207 -1.3213 14 6 7.7763 3.6854 -2.1722 15 6 9.0992 3.6499 -1.7951 16 6 9.4816 4.1602 -0.5408 17 6 10.8381 4.1296 -0.1429 18 1 11.6194 4.1179 -0.8884 19 6 11.1683 4.1146 1.2170 20 7 12.3643 4.4768 1.6038 21 14 9.9010 3.5773 2.4799 22 1 9.2132 4.7726 3.0305 23 1 10.5782 2.8452 3.5802 24 1 8.9041 2.6868 1.8329 25 6 8.5034 4.6964 0.3169 26 6 7.1870 4.7268 -0.0834 27 6 4.0981 2.8632 -0.1284 28 8 3.9923 3.6868 0.7550 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.9982 3.1544 1.3071 35 1 0.5488 2.1253 1.3968 36 1 2.0698 1.5875 2.1492 37 1 3.8100 0.0259 -1.7830 38 1 4.8817 5.1093 -1.2858 39 1 5.3174 4.3395 -2.8304 40 1 7.4806 3.2948 -3.1347 41 1 9.8413 3.2320 -2.4594 42 1 12.9980 4.8259 0.9577 43 1 8.7851 5.0867 1.2836 44 1 6.4351 5.1419 0.5713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569103293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:06 Heat of formation + Delta-G solvation = -64.634004 kcal Electronic energy + Delta-G solvation = -26677.206716 eV Core-core repulsion = 22979.369823 eV Total energy + Delta-G solvation = -3697.836893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.45665 -39.82639 -39.67745 -38.08345 -36.84984 -35.99319 -34.94333 -32.56158 -31.59717 -30.98683 -29.05807 -27.76404 -25.75545 -24.91457 -23.74000 -23.37501 -22.16456 -21.24720 -21.13161 -20.13942 -19.06724 -18.18323 -17.70182 -17.01816 -16.46711 -16.44280 -16.32325 -16.09870 -15.98417 -15.55667 -15.32839 -15.05325 -14.74670 -14.56359 -14.18630 -14.03928 -13.79383 -13.46406 -13.36519 -13.04635 -12.80847 -12.73275 -12.59459 -12.51278 -12.33494 -12.00312 -11.94514 -11.80084 -11.69594 -11.46850 -11.31613 -11.03030 -10.96036 -10.71194 -10.38895 -9.64658 -9.56668 -9.39535 -6.65505 0.55485 0.64288 0.81402 1.30094 1.36592 1.54345 1.71429 2.01782 2.12671 2.21285 2.53682 2.98108 3.42400 3.54276 3.76226 3.95418 4.08744 4.11353 4.23402 4.28974 4.32121 4.46803 4.52592 4.62038 4.66050 4.67593 4.71084 4.78076 4.85732 4.98443 5.07544 5.08765 5.16372 5.24596 5.26166 5.34207 5.46202 5.47738 5.57151 5.63097 5.75630 5.85106 5.92194 6.05534 6.14153 6.34323 6.43744 6.56713 6.73389 7.15194 7.88969 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.003741 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.024029 B = 7483.678939 C = 8213.535931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.078 4.078 4 H 0.076 0.924 5 C -0.156 4.156 6 C 0.102 3.898 7 H 0.145 0.855 8 N -0.706 5.706 9 C 0.697 3.303 10 O -0.579 6.579 11 N -0.574 5.574 12 C 0.182 3.818 13 C -0.235 4.235 14 C -0.050 4.050 15 C -0.237 4.237 16 C 0.084 3.916 17 C -0.544 4.544 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.834 5.834 21 Si 1.105 2.895 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.261 4.261 26 C -0.050 4.050 27 C 0.517 3.483 28 O -0.485 6.485 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.450 0.550 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.281 0.719 43 H 0.101 0.899 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.948 -8.926 -0.368 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.094 0.906 5 C -0.214 4.214 6 C -0.006 4.006 7 H 0.163 0.837 8 N -0.371 5.371 9 C 0.398 3.602 10 O -0.455 6.455 11 N -0.319 5.319 12 C 0.063 3.937 13 C -0.236 4.236 14 C -0.068 4.068 15 C -0.256 4.256 16 C 0.081 3.919 17 C -0.574 4.574 18 H 0.068 0.932 19 C -0.201 4.201 20 N -0.456 5.456 21 Si 0.926 3.074 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.280 4.280 26 C -0.068 4.068 27 C 0.306 3.694 28 O -0.356 6.356 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.297 0.703 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.791 -8.695 1.087 26.294 hybrid contribution 1.450 0.306 -2.183 2.639 sum -23.341 -8.389 -1.096 24.827 Atomic orbital electron populations 1.21802 0.94844 1.02278 1.02120 1.21565 0.96821 0.93519 1.03289 1.21323 0.88762 0.99475 1.00220 0.90592 1.21972 1.02608 1.00866 0.95912 1.22350 0.99041 0.90984 0.88250 0.83736 1.45450 1.58637 1.15368 1.17633 1.16082 0.79094 0.81168 0.83825 1.90962 1.52936 1.82385 1.19245 1.46760 1.51611 1.15137 1.18373 1.20298 0.88525 0.83659 1.01250 1.19535 0.94827 1.12246 0.97036 1.20774 0.92330 0.95639 0.98091 1.21127 0.96025 1.09455 0.99028 1.17944 0.92945 0.88405 0.92597 1.20693 0.93094 1.48820 0.94755 0.93167 1.28300 1.00302 0.90974 1.00478 1.70589 1.06775 1.28647 1.39613 0.83185 0.72718 0.78327 0.73153 1.18512 1.20294 1.19231 1.21104 0.94422 1.11103 1.01365 1.20780 0.94803 0.96127 0.95105 1.21342 0.76571 0.90708 0.80792 1.90745 1.56526 1.49720 1.38569 0.91868 0.92031 0.93018 0.91051 0.90270 0.92938 0.90373 0.91412 0.70286 0.87620 0.88254 0.86847 0.88746 0.90866 0.88089 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 71.98 0.70 -0.46 16 2 C -0.11 -0.90 5.36 30.59 0.16 -0.74 16 3 C -0.08 -0.96 2.20 -10.79 -0.02 -0.98 16 4 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.16 -2.07 8.61 71.98 0.62 -1.45 16 6 C 0.10 1.73 3.21 44.37 0.14 1.87 16 7 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 8 N -0.71 -12.88 5.95 -459.61 -2.73 -15.61 16 9 C 0.70 19.62 8.62 179.44 1.55 21.17 16 10 O -0.58 -20.32 17.48 -3.83 -0.07 -20.39 16 11 N -0.57 -16.50 2.59 -777.23 -2.01 -18.51 16 12 C 0.18 5.64 5.82 85.63 0.50 6.14 16 13 C -0.23 -9.22 5.49 -19.67 -0.11 -9.33 16 14 C -0.05 -2.13 9.67 22.22 0.21 -1.92 16 15 C -0.24 -11.63 9.80 22.73 0.22 -11.40 16 16 C 0.08 4.44 5.20 -21.29 -0.11 4.33 16 17 C -0.54 -31.06 9.44 23.46 0.22 -30.84 16 18 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 19 C 0.01 0.80 5.40 85.26 0.46 1.26 16 20 N -0.83 -46.57 13.65 21.83 0.30 -46.27 16 21 Si 1.10 50.15 24.83 68.60 1.70 51.85 16 22 H -0.26 -10.94 6.64 99.48 0.66 -10.28 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -12.18 6.84 99.48 0.68 -11.50 16 25 C -0.26 -12.70 7.21 22.73 0.16 -12.54 16 26 C -0.05 -2.09 9.67 22.22 0.21 -1.88 16 27 C 0.52 13.36 7.38 87.94 0.65 14.01 16 28 O -0.48 -14.51 15.62 -2.88 -0.05 -14.55 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.45 6.57 -2.39 -0.02 0.44 16 31 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.07 0.47 7.23 -2.39 -0.02 0.45 16 33 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.05 0.98 5.93 -2.38 -0.01 0.96 16 35 H 0.08 0.81 6.57 -2.39 -0.02 0.80 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.45 5.62 8.29 -92.71 -0.77 4.85 16 38 H 0.11 2.91 7.94 -2.39 -0.02 2.89 16 39 H 0.10 2.90 7.79 -2.39 -0.02 2.88 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.28 15.50 8.73 -92.70 -0.81 14.69 16 43 H 0.10 4.88 4.26 -2.91 -0.01 4.87 16 44 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -67.51 357.81 2.86 -64.65 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.15 Total: 21.60 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 5.57 Total: -22.77 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -4.45 Total: -80.39 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.11 Total: -34.94 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.70 Total: 51.85 kcal Total: -67.51 2.86 -64.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569103293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.014 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds