Wall clock time and date at job start Tue Mar 31 2020 10:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 H 1.08998 * 109.46390 * 304.99499 * 3 2 1 5 5 C 1.52995 * 109.47078 * 64.99971 * 3 2 1 6 6 C 1.53002 * 109.46905 * 185.00098 * 3 2 1 7 7 H 1.09000 * 110.65474 * 57.08046 * 6 3 2 8 8 N 1.47311 * 110.59962 * 294.17130 * 6 3 2 9 9 C 1.34523 * 106.62028 * 241.25334 * 8 6 3 10 10 O 1.21535 * 123.77370 * 180.20988 * 9 8 6 11 11 N 1.33801 * 112.45510 * 0.37944 * 9 8 6 12 12 C 1.46493 * 124.17538 * 179.86376 * 11 9 8 13 13 C 1.50705 * 109.47361 * 269.70107 * 12 11 9 14 14 C 1.38638 * 119.74967 * 90.00197 * 13 12 11 15 15 C 1.37613 * 120.24807 * 179.97438 * 14 13 12 16 16 C 1.40709 * 119.74697 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.24578 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00010 * 335.72332 * 17 16 15 19 19 C 1.39946 * 119.99947 * 155.72470 * 17 16 15 20 20 N 1.30821 * 120.00035 * 342.29492 * 19 17 16 21 21 Si 1.86801 * 119.99891 * 162.30023 * 19 17 16 22 22 H 1.48503 * 109.46816 * 269.99556 * 21 19 17 23 23 H 1.48491 * 109.47175 * 29.99743 * 21 19 17 24 24 H 1.48496 * 109.47127 * 149.99732 * 21 19 17 25 25 C 1.40719 * 119.51207 * 0.28087 * 16 15 14 26 26 C 1.37621 * 119.74279 * 359.40153 * 25 16 15 27 27 C 1.34767 * 111.64460 * 359.59915 * 11 9 8 28 28 O 1.21231 * 127.15547 * 180.19050 * 27 11 9 29 29 H 1.08994 * 109.46926 * 59.99915 * 1 2 3 30 30 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46700 * 300.00085 * 1 2 3 32 32 H 1.08999 * 109.47028 * 239.99489 * 2 1 3 33 33 H 1.09002 * 109.47124 * 120.00271 * 2 1 3 34 34 H 1.08999 * 109.46713 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47230 * 299.99981 * 5 3 2 36 36 H 1.09003 * 109.47096 * 60.00088 * 5 3 2 37 37 H 0.96998 * 126.68871 * 61.43538 * 8 6 3 38 38 H 1.09000 * 109.47470 * 149.70394 * 12 11 9 39 39 H 1.08997 * 109.47619 * 29.69895 * 12 11 9 40 40 H 1.07997 * 119.87117 * 359.97438 * 14 13 12 41 41 H 1.08009 * 120.12478 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00360 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.12475 * 179.72303 * 25 16 15 44 44 H 1.07995 * 119.87237 * 180.32011 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 1 3.8771 0.9155 -1.0264 8 7 4.1842 0.8439 1.0685 9 6 4.9473 1.8000 1.6280 10 8 5.6056 1.6351 2.6363 11 7 4.8979 2.9539 0.9525 12 6 5.6277 4.1644 1.3371 13 6 4.7699 4.9985 2.2534 14 6 4.8344 4.8017 3.6243 15 6 4.0561 5.5579 4.4705 16 6 3.1921 6.5333 3.9396 17 6 2.3880 7.3166 4.7994 18 1 2.1236 6.9452 5.7785 19 6 1.9349 8.5731 4.3818 20 7 2.5129 9.1753 3.3745 21 14 0.5046 9.3903 5.2627 22 1 -0.7699 8.9907 4.6137 23 1 0.4908 8.9643 6.6851 24 1 0.6561 10.8657 5.1894 25 6 3.1300 6.7199 2.5462 26 6 3.9224 5.9567 1.7192 27 6 4.0982 2.8631 -0.1285 28 8 3.8553 3.7352 -0.9348 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.9991 3.1540 1.3074 35 1 0.5491 2.1252 1.3969 36 1 2.0700 1.5874 2.1491 37 1 4.0668 -0.0646 1.3875 38 1 5.8722 4.7403 0.4445 39 1 6.5466 3.8863 1.8530 40 1 5.4980 4.0522 4.0294 41 1 4.1082 5.4032 5.5382 42 1 2.1986 10.0460 3.0847 43 1 2.4671 7.4627 2.1277 44 1 3.8802 6.1018 0.6499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569103295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:11 Heat of formation + Delta-G solvation = -42.647775 kcal Electronic energy + Delta-G solvation = -27010.516700 eV Core-core repulsion = 23313.633202 eV Total energy + Delta-G solvation = -3696.883499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29073 -38.32548 -37.78984 -37.05817 -35.41345 -34.35070 -33.31708 -30.46389 -30.01461 -29.26967 -27.52227 -27.02063 -24.63182 -23.83683 -22.55819 -21.02937 -20.67684 -20.14079 -19.57671 -17.75835 -17.31545 -16.99508 -16.24623 -15.55168 -15.42279 -15.21524 -14.88609 -14.72180 -14.14265 -14.08692 -13.81418 -13.62905 -13.60625 -13.41241 -12.59734 -12.36653 -12.15419 -11.94293 -11.81250 -11.71264 -11.60889 -11.36914 -11.25506 -11.10052 -10.99131 -10.85526 -10.75804 -10.62281 -10.39643 -9.90007 -9.88062 -9.40974 -9.40469 -9.17509 -9.09675 -7.48583 -7.37338 -6.81378 -4.40861 1.85424 2.31266 2.82259 3.04347 3.08027 3.09158 3.15349 3.33170 3.37217 3.89246 4.07973 4.38284 4.58499 4.59047 4.77132 4.93971 5.23391 5.31396 5.34711 5.44576 5.49238 5.64466 5.75746 5.81699 5.82205 5.86426 5.90072 5.97899 5.98476 6.15160 6.24726 6.38132 6.40086 6.43755 6.86169 6.94988 7.03063 7.24659 7.31638 7.39523 7.60231 7.64800 7.82756 8.02673 8.09989 8.26861 8.37635 8.60848 8.84988 8.93796 10.12542 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003977 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.637061 B = 7038.375219 C = 7868.269237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.094 0.906 5 C -0.154 4.154 6 C 0.095 3.905 7 H 0.120 0.880 8 N -0.728 5.728 9 C 0.703 3.297 10 O -0.544 6.544 11 N -0.564 5.564 12 C 0.180 3.820 13 C -0.251 4.251 14 C -0.061 4.061 15 C -0.232 4.232 16 C 0.119 3.881 17 C -0.459 4.459 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.787 5.787 21 Si 0.908 3.092 22 H -0.267 1.267 23 H -0.262 1.262 24 H -0.277 1.277 25 C -0.171 4.171 26 C -0.077 4.077 27 C 0.526 3.474 28 O -0.469 6.469 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.434 0.566 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.282 0.718 43 H 0.117 0.883 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -14.914 -8.368 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.108 4.108 4 H 0.112 0.888 5 C -0.211 4.211 6 C -0.014 4.014 7 H 0.138 0.862 8 N -0.393 5.393 9 C 0.405 3.595 10 O -0.418 6.418 11 N -0.309 5.309 12 C 0.062 3.938 13 C -0.253 4.253 14 C -0.080 4.080 15 C -0.251 4.251 16 C 0.116 3.884 17 C -0.488 4.488 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.412 5.412 21 Si 0.733 3.267 22 H -0.192 1.192 23 H -0.186 1.186 24 H -0.202 1.202 25 C -0.190 4.190 26 C -0.096 4.096 27 C 0.312 3.688 28 O -0.339 6.339 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.278 0.722 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.508 -14.163 -8.384 16.527 hybrid contribution -0.701 0.111 0.522 0.881 sum -2.208 -14.053 -7.861 16.253 Atomic orbital electron populations 1.21808 0.95244 1.01631 1.02432 1.21543 0.96623 0.95149 1.02028 1.21394 0.90774 0.97826 1.00841 0.88817 1.21915 1.02033 1.01188 0.96009 1.22179 0.95819 0.92588 0.90797 0.86220 1.45530 1.50019 1.14722 1.29060 1.15938 0.80268 0.80582 0.82755 1.90976 1.45384 1.81693 1.23700 1.46897 1.44800 1.13396 1.25757 1.20375 0.93356 0.81457 0.98630 1.19049 1.08343 1.04681 0.93228 1.20465 0.97680 0.97115 0.92714 1.20962 1.02759 1.04035 0.97369 1.17675 0.88662 0.89694 0.92337 1.19666 1.26926 1.00236 1.01977 0.90345 1.25940 0.96412 0.97252 0.94623 1.69829 1.34784 1.13669 1.22886 0.86307 0.81481 0.78208 0.80740 1.19217 1.18557 1.20224 1.21281 1.02477 1.01990 0.93282 1.20589 0.96054 0.95410 0.97505 1.20702 0.77954 0.89523 0.80601 1.90776 1.57822 1.44955 1.40391 0.92524 0.92735 0.92118 0.91694 0.91772 0.91887 0.91633 0.92168 0.72247 0.89717 0.89591 0.88943 0.89019 0.90738 0.86492 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.84 5.25 -26.73 -0.14 -0.98 16 3 C -0.09 -0.88 2.32 -90.62 -0.21 -1.09 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 5 C -0.15 -1.99 8.42 37.16 0.31 -1.68 16 6 C 0.10 1.01 3.44 -68.20 -0.23 0.77 16 7 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 8 N -0.73 -8.04 5.06 -59.19 -0.30 -8.34 16 9 C 0.70 11.11 8.53 -88.01 -0.75 10.36 16 10 O -0.54 -10.38 17.48 5.33 0.09 -10.29 16 11 N -0.56 -9.26 2.59 -122.03 -0.32 -9.58 16 12 C 0.18 3.26 5.82 -5.20 -0.03 3.23 16 13 C -0.25 -5.50 5.49 -104.33 -0.57 -6.07 16 14 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 15 C -0.23 -5.80 9.80 -38.88 -0.38 -6.18 16 16 C 0.12 3.19 5.57 -106.82 -0.60 2.59 16 17 C -0.46 -12.18 9.05 -37.74 -0.34 -12.52 16 18 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 19 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 20 N -0.79 -20.27 10.95 55.55 0.61 -19.66 16 21 Si 0.91 18.58 29.59 -169.99 -5.03 13.54 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.17 -4.46 8.70 -38.87 -0.34 -4.80 16 26 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 27 C 0.53 7.95 6.46 -10.56 -0.07 7.89 16 28 O -0.47 -8.30 17.76 5.60 0.10 -8.20 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.44 7.61 -51.93 -0.40 0.05 16 34 H 0.06 1.05 7.28 -51.93 -0.38 0.67 16 35 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 36 H 0.06 0.80 7.51 -51.93 -0.39 0.41 16 37 H 0.43 3.62 8.54 -40.82 -0.35 3.27 16 38 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 39 H 0.09 1.49 7.79 -51.93 -0.40 1.09 16 40 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 44 H 0.09 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -30.32 364.79 -9.46 -39.78 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.27 Total: 8.65 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.85 Total: -11.40 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.01 Total: -37.58 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.19 Total: -18.49 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.32 -9.46 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569103295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.864 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds