Wall clock time and date at job start Tue Mar 31 2020 10:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 H 1.08998 * 109.46390 * 304.99499 * 3 2 1 5 5 C 1.52995 * 109.47078 * 64.99971 * 3 2 1 6 6 C 1.53002 * 109.46905 * 185.00098 * 3 2 1 7 7 H 1.09000 * 110.65474 * 57.08046 * 6 3 2 8 8 N 1.47311 * 110.59962 * 294.17130 * 6 3 2 9 9 C 1.34523 * 106.62028 * 241.25334 * 8 6 3 10 10 O 1.21535 * 123.77370 * 180.20988 * 9 8 6 11 11 N 1.33801 * 112.45510 * 0.37944 * 9 8 6 12 12 C 1.46493 * 124.17538 * 179.86376 * 11 9 8 13 13 C 1.50705 * 109.47361 * 269.70107 * 12 11 9 14 14 C 1.38638 * 119.74967 * 90.00197 * 13 12 11 15 15 C 1.37613 * 120.24807 * 179.97438 * 14 13 12 16 16 C 1.40709 * 119.74697 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.24578 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00010 * 335.72332 * 17 16 15 19 19 C 1.39946 * 119.99947 * 155.72470 * 17 16 15 20 20 N 1.30821 * 120.00035 * 342.29492 * 19 17 16 21 21 Si 1.86801 * 119.99891 * 162.30023 * 19 17 16 22 22 H 1.48503 * 109.46816 * 269.99556 * 21 19 17 23 23 H 1.48491 * 109.47175 * 29.99743 * 21 19 17 24 24 H 1.48496 * 109.47127 * 149.99732 * 21 19 17 25 25 C 1.40719 * 119.51207 * 0.28087 * 16 15 14 26 26 C 1.37621 * 119.74279 * 359.40153 * 25 16 15 27 27 C 1.34767 * 111.64460 * 359.59915 * 11 9 8 28 28 O 1.21231 * 127.15547 * 180.19050 * 27 11 9 29 29 H 1.08994 * 109.46926 * 59.99915 * 1 2 3 30 30 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46700 * 300.00085 * 1 2 3 32 32 H 1.08999 * 109.47028 * 239.99489 * 2 1 3 33 33 H 1.09002 * 109.47124 * 120.00271 * 2 1 3 34 34 H 1.08999 * 109.46713 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47230 * 299.99981 * 5 3 2 36 36 H 1.09003 * 109.47096 * 60.00088 * 5 3 2 37 37 H 0.96998 * 126.68871 * 61.43538 * 8 6 3 38 38 H 1.09000 * 109.47470 * 149.70394 * 12 11 9 39 39 H 1.08997 * 109.47619 * 29.69895 * 12 11 9 40 40 H 1.07997 * 119.87117 * 359.97438 * 14 13 12 41 41 H 1.08009 * 120.12478 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00360 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.12475 * 179.72303 * 25 16 15 44 44 H 1.07995 * 119.87237 * 180.32011 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 1 3.8771 0.9155 -1.0264 8 7 4.1842 0.8439 1.0685 9 6 4.9473 1.8000 1.6280 10 8 5.6056 1.6351 2.6363 11 7 4.8979 2.9539 0.9525 12 6 5.6277 4.1644 1.3371 13 6 4.7699 4.9985 2.2534 14 6 4.8344 4.8017 3.6243 15 6 4.0561 5.5579 4.4705 16 6 3.1921 6.5333 3.9396 17 6 2.3880 7.3166 4.7994 18 1 2.1236 6.9452 5.7785 19 6 1.9349 8.5731 4.3818 20 7 2.5129 9.1753 3.3745 21 14 0.5046 9.3903 5.2627 22 1 -0.7699 8.9907 4.6137 23 1 0.4908 8.9643 6.6851 24 1 0.6561 10.8657 5.1894 25 6 3.1300 6.7199 2.5462 26 6 3.9224 5.9567 1.7192 27 6 4.0982 2.8631 -0.1285 28 8 3.8553 3.7352 -0.9348 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.9991 3.1540 1.3074 35 1 0.5491 2.1252 1.3969 36 1 2.0700 1.5874 2.1491 37 1 4.0668 -0.0646 1.3875 38 1 5.8722 4.7403 0.4445 39 1 6.5466 3.8863 1.8530 40 1 5.4980 4.0522 4.0294 41 1 4.1082 5.4032 5.5382 42 1 2.1986 10.0460 3.0847 43 1 2.4671 7.4627 2.1277 44 1 3.8802 6.1018 0.6499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569103295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:10 Heat of formation + Delta-G solvation = -59.969261 kcal Electronic energy + Delta-G solvation = -27011.267816 eV Core-core repulsion = 23313.633202 eV Total energy + Delta-G solvation = -3697.634615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.48335 -39.60805 -39.57234 -38.17800 -36.74801 -35.86666 -34.75213 -32.20993 -31.21988 -30.81573 -29.08522 -28.20574 -26.09791 -25.04933 -23.70141 -22.90778 -22.27734 -21.18207 -20.85891 -19.27418 -18.94313 -18.18060 -17.45806 -17.23212 -16.58105 -16.53159 -16.19256 -15.72089 -15.69125 -15.46981 -15.38621 -15.19355 -14.82103 -14.36186 -14.25843 -13.88449 -13.51045 -13.30976 -13.17772 -13.06186 -12.98842 -12.76329 -12.61883 -12.46531 -12.33038 -12.28164 -12.00915 -11.68639 -11.62795 -11.48719 -11.33588 -11.12168 -11.02114 -10.70930 -10.33931 -9.44481 -9.32847 -8.69888 -6.41099 0.64937 0.73157 1.09107 1.32599 1.36344 1.49372 1.60107 2.07261 2.17403 2.27724 2.68185 3.00981 3.50862 3.68136 3.77150 3.98098 4.00207 4.21588 4.30725 4.41201 4.45127 4.51018 4.54020 4.57718 4.66653 4.68601 4.70872 4.81262 4.97495 5.01197 5.09881 5.11312 5.14479 5.24332 5.30505 5.39032 5.41274 5.53009 5.63870 5.88046 5.89012 6.03577 6.08981 6.22655 6.31858 6.45828 6.63359 6.87447 6.95925 7.19491 8.27034 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003977 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.637061 B = 7038.375219 C = 7868.269237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.082 4.082 4 H 0.096 0.904 5 C -0.151 4.151 6 C 0.108 3.892 7 H 0.169 0.831 8 N -0.702 5.702 9 C 0.699 3.301 10 O -0.580 6.580 11 N -0.572 5.572 12 C 0.184 3.816 13 C -0.236 4.236 14 C -0.062 4.062 15 C -0.248 4.248 16 C 0.091 3.909 17 C -0.497 4.497 18 H 0.076 0.924 19 C 0.037 3.963 20 N -0.819 5.819 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.258 1.258 24 H -0.265 1.265 25 C -0.191 4.191 26 C -0.077 4.077 27 C 0.517 3.483 28 O -0.499 6.499 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.451 0.549 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.290 0.710 43 H 0.100 0.900 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -17.188 -9.608 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.101 4.101 4 H 0.114 0.886 5 C -0.209 4.209 6 C 0.000 4.000 7 H 0.186 0.814 8 N -0.367 5.367 9 C 0.400 3.600 10 O -0.457 6.457 11 N -0.316 5.316 12 C 0.064 3.936 13 C -0.238 4.238 14 C -0.081 4.081 15 C -0.267 4.267 16 C 0.088 3.912 17 C -0.526 4.526 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.445 5.445 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.181 1.181 24 H -0.190 1.190 25 C -0.211 4.211 26 C -0.096 4.096 27 C 0.306 3.694 28 O -0.371 6.371 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.298 0.702 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.110 -16.496 -9.647 19.226 hybrid contribution -0.459 0.736 0.820 1.194 sum -2.570 -15.760 -8.827 18.245 Atomic orbital electron populations 1.21827 0.95415 1.02326 1.01806 1.21532 0.96399 0.92864 1.03792 1.21402 0.90071 0.99714 0.98931 0.88558 1.21877 1.02454 0.98698 0.97829 1.22371 0.95893 0.89651 0.92065 0.81432 1.45384 1.48212 1.14587 1.28539 1.16047 0.80573 0.80989 0.82379 1.90955 1.47176 1.82276 1.25300 1.46756 1.45188 1.13135 1.26529 1.20227 0.93011 0.82011 0.98382 1.19388 1.07096 1.03775 0.93544 1.20626 0.97378 0.96944 0.93114 1.21131 1.03213 1.04424 0.97942 1.17967 0.89658 0.90723 0.92838 1.19894 1.28815 1.01563 1.02323 0.90594 1.26798 0.98576 0.97229 0.95316 1.69875 1.36063 1.14350 1.24172 0.85184 0.77571 0.77456 0.79411 1.18608 1.18135 1.18958 1.21222 1.03522 1.02752 0.93579 1.20699 0.95895 0.95382 0.97644 1.21473 0.77153 0.91233 0.79551 1.90761 1.58564 1.46473 1.41275 0.92452 0.91392 0.93539 0.88888 0.91004 0.96333 0.90903 0.92757 0.70199 0.88615 0.88584 0.87655 0.88728 0.89921 0.88205 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.67 71.98 0.70 -1.14 16 2 C -0.11 -1.12 5.25 30.60 0.16 -0.96 16 3 C -0.08 -1.39 2.32 -10.79 -0.03 -1.42 16 4 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.15 -3.81 8.42 71.98 0.61 -3.20 16 6 C 0.11 1.92 3.44 44.37 0.15 2.07 16 7 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 8 N -0.70 -13.37 5.06 -459.61 -2.32 -15.69 16 9 C 0.70 20.96 8.53 179.44 1.53 22.49 16 10 O -0.58 -21.56 17.48 -3.83 -0.07 -21.62 16 11 N -0.57 -18.15 2.59 -777.22 -2.01 -20.16 16 12 C 0.18 6.54 5.82 85.64 0.50 7.04 16 13 C -0.24 -10.46 5.49 -19.67 -0.11 -10.57 16 14 C -0.06 -2.91 9.67 22.22 0.21 -2.69 16 15 C -0.25 -12.86 9.80 22.73 0.22 -12.64 16 16 C 0.09 5.08 5.57 -21.29 -0.12 4.96 16 17 C -0.50 -27.51 9.05 23.46 0.21 -27.30 16 18 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 19 C 0.04 1.87 5.14 85.26 0.44 2.31 16 20 N -0.82 -43.57 10.95 21.83 0.24 -43.33 16 21 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 25 C -0.19 -10.46 8.70 22.73 0.20 -10.27 16 26 C -0.08 -3.76 9.67 22.22 0.21 -3.55 16 27 C 0.52 14.84 6.46 87.94 0.57 15.41 16 28 O -0.50 -17.22 17.76 -2.88 -0.05 -17.27 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.67 6.56 -2.39 -0.02 0.66 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.67 7.61 -2.39 -0.02 0.66 16 34 H 0.02 0.61 7.28 -2.39 -0.02 0.59 16 35 H 0.07 1.69 6.56 -2.39 -0.02 1.67 16 36 H 0.05 1.40 7.51 -2.39 -0.02 1.38 16 37 H 0.45 5.80 8.54 -92.71 -0.79 5.01 16 38 H 0.10 3.20 7.94 -2.39 -0.02 3.18 16 39 H 0.10 3.24 7.79 -2.39 -0.02 3.22 16 40 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 43 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 44 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -69.79 364.79 3.51 -66.28 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.23 Total: 30.57 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 5.46 Total: -19.45 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -4.10 Total: -79.18 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.12 Total: -38.89 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -69.79 3.51 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569103295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.311 kcal (2) G-P(sol) polarization free energy of solvation -69.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds