Wall clock time and date at job start Tue Mar 31 2020 10:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 H 1.08997 * 109.46929 * 304.99632 * 3 2 1 5 5 C 1.52999 * 109.47357 * 65.00219 * 3 2 1 6 6 C 1.53003 * 109.46600 * 185.00028 * 3 2 1 7 7 C 1.53000 * 109.46857 * 173.89375 * 6 3 2 8 8 H 1.09008 * 110.53813 * 52.47309 * 7 6 3 9 9 N 1.47311 * 110.60026 * 175.30067 * 7 6 3 10 10 C 1.34532 * 106.61649 * 118.67829 * 9 7 6 11 11 O 1.21542 * 123.76877 * 179.97438 * 10 9 7 12 12 N 1.33786 * 112.46073 * 0.02562 * 10 9 7 13 13 C 1.40212 * 124.18063 * 180.02562 * 12 10 9 14 14 C 1.39237 * 119.94116 * 5.61008 * 13 12 10 15 15 C 1.38503 * 120.43697 * 180.02562 * 14 13 12 16 16 C 1.37679 * 120.31508 * 0.02562 * 15 14 13 17 17 C 1.40734 * 119.87536 * 359.97438 * 16 15 14 18 18 C 1.41403 * 120.21682 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00872 * 214.08735 * 18 17 16 20 20 C 1.39939 * 119.99580 * 34.08363 * 18 17 16 21 21 N 1.30821 * 120.00309 * 357.21017 * 20 18 17 22 22 Si 1.86802 * 119.99760 * 177.20966 * 20 18 17 23 23 H 1.48498 * 109.47180 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47103 * 120.00129 * 22 20 18 25 25 H 1.48498 * 109.47289 * 239.99724 * 22 20 18 26 26 C 1.38195 * 119.94614 * 185.34445 * 13 12 10 27 27 C 1.34773 * 111.64406 * 359.97438 * 12 10 9 28 28 O 1.21239 * 127.15771 * 180.02562 * 27 12 10 29 29 H 1.09003 * 109.47149 * 59.99950 * 1 2 3 30 30 H 1.08998 * 109.47492 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46965 * 300.00026 * 1 2 3 32 32 H 1.08995 * 109.46954 * 240.00025 * 2 1 3 33 33 H 1.08998 * 109.46716 * 120.00221 * 2 1 3 34 34 H 1.09007 * 109.46938 * 305.05165 * 5 3 2 35 35 H 1.09002 * 109.47330 * 65.04426 * 5 3 2 36 36 H 1.08994 * 109.47179 * 185.05404 * 5 3 2 37 37 H 1.09001 * 109.47479 * 53.89860 * 6 3 2 38 38 H 1.09002 * 109.47121 * 293.89221 * 6 3 2 39 39 H 0.96997 * 126.69411 * 298.72145 * 9 7 6 40 40 H 1.08000 * 119.78795 * 0.02823 * 14 13 12 41 41 H 1.07995 * 119.84400 * 180.02562 * 15 14 13 42 42 H 1.08004 * 120.06494 * 179.97438 * 16 15 14 43 43 H 0.96994 * 120.00444 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.15624 * 359.97337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0623 2.8829 -0.2788 8 1 3.6671 3.5112 0.5195 9 7 5.5348 2.9238 -0.2896 10 6 5.8968 3.4316 -1.4817 11 8 7.0515 3.6025 -1.8207 12 7 4.8439 3.7284 -2.2519 13 6 4.9392 4.2700 -3.5416 14 6 6.1867 4.4226 -4.1409 15 6 6.2927 4.9569 -5.4143 16 6 5.1643 5.3438 -6.1018 17 6 3.8968 5.1955 -5.5086 18 6 2.7330 5.5900 -6.2084 19 1 1.8922 6.0011 -5.6697 20 6 2.6710 5.4477 -7.5991 21 7 3.7092 5.0010 -8.2580 22 14 1.1057 5.8957 -8.5149 23 1 0.0851 6.3720 -7.5471 24 1 1.3972 6.9708 -9.4969 25 1 0.5902 4.6999 -9.2287 26 6 3.7944 4.6464 -4.2181 27 6 3.6804 3.4415 -1.6353 28 8 2.5611 3.5975 -2.0743 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5564 2.0462 1.4406 35 1 2.1415 1.6425 2.1426 36 1 1.9195 3.1781 1.2703 37 1 3.8580 0.8634 -1.0003 38 1 4.0037 1.0012 0.7684 39 1 6.1278 2.6395 0.4234 40 1 7.0776 4.1223 -3.6094 41 1 7.2651 5.0706 -5.8702 42 1 5.2517 5.7604 -7.0944 43 1 3.6663 4.9027 -9.2220 44 1 2.8260 4.5239 -3.7558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583322578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:23 Heat of formation + Delta-G solvation = -31.233452 kcal Electronic energy + Delta-G solvation = -26636.026084 eV Core-core repulsion = 22939.637547 eV Total energy + Delta-G solvation = -3696.388537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.44665 -38.56771 -37.89664 -36.97442 -35.86932 -34.57121 -33.09921 -31.18274 -29.81910 -28.73423 -28.28919 -25.88851 -25.31870 -23.50123 -22.93364 -21.79992 -20.37274 -20.24743 -19.59559 -18.02686 -17.19653 -16.98291 -16.01985 -15.60187 -15.44370 -15.16729 -15.04899 -14.90613 -14.54237 -14.04826 -13.93484 -13.63022 -13.25473 -13.11563 -12.95789 -12.72668 -12.19920 -12.14408 -12.00680 -11.82141 -11.56909 -11.30123 -11.22994 -11.18075 -10.97060 -10.88224 -10.74053 -10.71344 -10.44641 -9.93361 -9.81818 -9.52123 -9.43256 -9.16073 -8.96696 -7.44300 -7.03855 -6.59412 -4.38826 1.79404 2.47914 2.59186 2.80927 3.11980 3.16470 3.21058 3.21651 3.58899 3.98893 4.01895 4.41569 4.55040 4.70696 4.72678 4.81457 5.01672 5.15114 5.35586 5.36814 5.41639 5.48735 5.57531 5.63305 5.69153 5.77881 5.86805 5.90209 5.93687 5.99635 6.22504 6.28411 6.34369 6.57321 6.76405 6.87072 7.03975 7.04905 7.29603 7.40499 7.54661 7.68521 7.94669 8.04934 8.07370 8.22683 8.43865 8.66524 8.93707 8.95440 10.32096 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.004156 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.423982 B = 6735.270697 C = 8602.202226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.104 4.104 4 H 0.094 0.906 5 C -0.150 4.150 6 C -0.110 4.110 7 C 0.092 3.908 8 H 0.125 0.875 9 N -0.730 5.730 10 C 0.700 3.300 11 O -0.530 6.530 12 N -0.506 5.506 13 C 0.127 3.873 14 C -0.235 4.235 15 C -0.102 4.102 16 C -0.150 4.150 17 C 0.114 3.886 18 C -0.461 4.461 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.812 5.812 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.223 4.223 27 C 0.517 3.483 28 O -0.446 6.446 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.436 0.564 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.277 0.723 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -7.616 16.743 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.123 4.123 4 H 0.112 0.888 5 C -0.207 4.207 6 C -0.149 4.149 7 C -0.017 4.017 8 H 0.143 0.857 9 N -0.395 5.395 10 C 0.401 3.599 11 O -0.404 6.404 12 N -0.243 5.243 13 C 0.038 3.962 14 C -0.256 4.256 15 C -0.121 4.121 16 C -0.170 4.170 17 C 0.111 3.889 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.440 5.440 22 Si 0.740 3.260 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.244 4.244 27 C 0.303 3.697 28 O -0.315 6.315 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.280 0.720 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.504 -7.449 15.996 17.822 hybrid contribution -0.331 -0.074 -0.154 0.372 sum -2.835 -7.523 15.842 17.765 Atomic orbital electron populations 1.21827 0.95712 1.01424 1.02224 1.21514 0.96172 0.95825 1.01844 1.21311 0.93654 0.97200 1.00118 0.88771 1.21937 1.01891 1.00286 0.96579 1.21817 0.96690 0.92720 1.03639 1.22215 0.81685 1.00171 0.97678 0.85718 1.45578 1.07033 1.69086 1.17850 1.15905 0.84637 0.78410 0.80913 1.90884 1.17582 1.57472 1.74414 1.43755 1.07855 1.56339 1.16381 1.17595 0.96230 1.01680 0.80649 1.20978 0.95569 1.11478 0.97538 1.20678 0.97671 0.99823 0.93926 1.21746 0.91264 1.02919 1.01073 1.17480 0.93305 0.88440 0.89679 1.19512 1.00631 1.37542 0.91499 0.90486 1.25850 0.97770 0.92863 0.97890 1.69753 1.29520 1.35506 1.09202 0.86150 0.81683 0.78725 0.79446 1.18548 1.19974 1.20002 1.21458 0.95953 1.08299 0.98642 1.20767 0.84546 0.77559 0.86797 1.90730 1.21205 1.49431 1.70127 0.92359 0.92982 0.92507 0.91926 0.92172 0.92034 0.92784 0.92624 0.90710 0.89886 0.71964 0.85173 0.88507 0.85133 0.91184 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -0.98 5.40 -26.73 -0.14 -1.13 16 3 C -0.10 -0.97 2.32 -90.62 -0.21 -1.18 16 4 H 0.09 1.16 6.20 -51.93 -0.32 0.83 16 5 C -0.15 -1.15 8.74 37.16 0.32 -0.82 16 6 C -0.11 -1.01 4.52 -26.73 -0.12 -1.13 16 7 C 0.09 1.02 3.60 -68.21 -0.25 0.77 16 8 H 0.13 1.09 6.48 -51.92 -0.34 0.75 16 9 N -0.73 -8.43 6.24 -59.19 -0.37 -8.80 16 10 C 0.70 12.21 8.54 -88.02 -0.75 11.46 16 11 O -0.53 -10.78 14.64 5.33 0.08 -10.71 16 12 N -0.51 -9.94 2.83 -64.40 -0.18 -10.12 16 13 C 0.13 3.03 6.55 -83.67 -0.55 2.48 16 14 C -0.24 -5.68 9.27 -39.11 -0.36 -6.04 16 15 C -0.10 -2.49 10.02 -39.69 -0.40 -2.88 16 16 C -0.15 -3.99 8.66 -38.84 -0.34 -4.33 16 17 C 0.11 3.12 5.55 -106.85 -0.59 2.53 16 18 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 20 C 0.07 1.83 5.41 -17.35 -0.09 1.73 16 21 N -0.81 -21.41 10.61 55.55 0.59 -20.82 16 22 Si 0.91 19.31 29.56 -169.99 -5.02 14.29 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.22 -5.73 9.06 -38.70 -0.35 -6.08 16 27 C 0.52 8.74 7.36 -10.55 -0.08 8.66 16 28 O -0.45 -8.58 13.32 5.59 0.07 -8.50 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 6.46 -51.93 -0.34 0.09 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.43 6.71 -51.93 -0.35 0.08 16 37 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.44 3.52 8.96 -40.82 -0.37 3.15 16 40 H 0.13 3.08 5.15 -52.49 -0.27 2.81 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.13 3.56 6.14 -52.48 -0.32 3.23 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.13 3.24 5.33 -52.48 -0.28 2.96 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -31.19 351.19 -9.27 -40.46 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.84 Total: 8.69 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.89 Total: -9.79 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.04 Total: -39.74 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.15 Total: -19.21 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.19 -9.27 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583322578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.223 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds