Wall clock time and date at job start Tue Mar 31 2020 10:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 H 1.08997 * 109.46929 * 304.99632 * 3 2 1 5 5 C 1.52999 * 109.47357 * 65.00219 * 3 2 1 6 6 C 1.53003 * 109.46600 * 185.00028 * 3 2 1 7 7 C 1.53000 * 109.46857 * 173.89375 * 6 3 2 8 8 H 1.09008 * 110.53813 * 52.47309 * 7 6 3 9 9 N 1.47311 * 110.60026 * 175.30067 * 7 6 3 10 10 C 1.34532 * 106.61649 * 118.67829 * 9 7 6 11 11 O 1.21542 * 123.76877 * 179.97438 * 10 9 7 12 12 N 1.33786 * 112.46073 * 0.02562 * 10 9 7 13 13 C 1.40212 * 124.18063 * 180.02562 * 12 10 9 14 14 C 1.39237 * 119.94116 * 5.61008 * 13 12 10 15 15 C 1.38503 * 120.43697 * 180.02562 * 14 13 12 16 16 C 1.37679 * 120.31508 * 0.02562 * 15 14 13 17 17 C 1.40734 * 119.87536 * 359.97438 * 16 15 14 18 18 C 1.41403 * 120.21682 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00872 * 214.08735 * 18 17 16 20 20 C 1.39939 * 119.99580 * 34.08363 * 18 17 16 21 21 N 1.30821 * 120.00309 * 357.21017 * 20 18 17 22 22 Si 1.86802 * 119.99760 * 177.20966 * 20 18 17 23 23 H 1.48498 * 109.47180 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47103 * 120.00129 * 22 20 18 25 25 H 1.48498 * 109.47289 * 239.99724 * 22 20 18 26 26 C 1.38195 * 119.94614 * 185.34445 * 13 12 10 27 27 C 1.34773 * 111.64406 * 359.97438 * 12 10 9 28 28 O 1.21239 * 127.15771 * 180.02562 * 27 12 10 29 29 H 1.09003 * 109.47149 * 59.99950 * 1 2 3 30 30 H 1.08998 * 109.47492 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46965 * 300.00026 * 1 2 3 32 32 H 1.08995 * 109.46954 * 240.00025 * 2 1 3 33 33 H 1.08998 * 109.46716 * 120.00221 * 2 1 3 34 34 H 1.09007 * 109.46938 * 305.05165 * 5 3 2 35 35 H 1.09002 * 109.47330 * 65.04426 * 5 3 2 36 36 H 1.08994 * 109.47179 * 185.05404 * 5 3 2 37 37 H 1.09001 * 109.47479 * 53.89860 * 6 3 2 38 38 H 1.09002 * 109.47121 * 293.89221 * 6 3 2 39 39 H 0.96997 * 126.69411 * 298.72145 * 9 7 6 40 40 H 1.08000 * 119.78795 * 0.02823 * 14 13 12 41 41 H 1.07995 * 119.84400 * 180.02562 * 15 14 13 42 42 H 1.08004 * 120.06494 * 179.97438 * 16 15 14 43 43 H 0.96994 * 120.00444 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.15624 * 359.97337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0623 2.8829 -0.2788 8 1 3.6671 3.5112 0.5195 9 7 5.5348 2.9238 -0.2896 10 6 5.8968 3.4316 -1.4817 11 8 7.0515 3.6025 -1.8207 12 7 4.8439 3.7284 -2.2519 13 6 4.9392 4.2700 -3.5416 14 6 6.1867 4.4226 -4.1409 15 6 6.2927 4.9569 -5.4143 16 6 5.1643 5.3438 -6.1018 17 6 3.8968 5.1955 -5.5086 18 6 2.7330 5.5900 -6.2084 19 1 1.8922 6.0011 -5.6697 20 6 2.6710 5.4477 -7.5991 21 7 3.7092 5.0010 -8.2580 22 14 1.1057 5.8957 -8.5149 23 1 0.0851 6.3720 -7.5471 24 1 1.3972 6.9708 -9.4969 25 1 0.5902 4.6999 -9.2287 26 6 3.7944 4.6464 -4.2181 27 6 3.6804 3.4415 -1.6353 28 8 2.5611 3.5975 -2.0743 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5564 2.0462 1.4406 35 1 2.1415 1.6425 2.1426 36 1 1.9195 3.1781 1.2703 37 1 3.8580 0.8634 -1.0003 38 1 4.0037 1.0012 0.7684 39 1 6.1278 2.6395 0.4234 40 1 7.0776 4.1223 -3.6094 41 1 7.2651 5.0706 -5.8702 42 1 5.2517 5.7604 -7.0944 43 1 3.6663 4.9027 -9.2220 44 1 2.8260 4.5239 -3.7558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583322578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:22 Heat of formation + Delta-G solvation = -49.885448 kcal Electronic energy + Delta-G solvation = -26636.834895 eV Core-core repulsion = 22939.637547 eV Total energy + Delta-G solvation = -3697.197348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.80768 -39.93420 -39.55056 -38.12267 -37.19481 -36.14207 -34.86393 -32.04444 -31.79092 -30.51311 -29.07885 -27.37535 -26.72794 -24.66202 -24.49310 -23.11436 -22.00036 -21.64031 -20.63177 -19.59860 -18.72057 -18.26623 -17.55547 -17.20234 -16.86502 -16.64260 -16.43276 -16.15565 -15.78284 -15.29551 -15.06830 -14.97041 -14.71408 -14.54989 -14.16182 -13.99591 -13.72098 -13.47480 -13.11854 -12.97732 -12.89549 -12.78335 -12.68393 -12.66581 -12.34224 -12.10793 -11.75031 -11.71198 -11.60506 -11.49158 -11.37152 -11.19358 -11.04256 -10.63671 -10.49370 -9.44987 -8.96294 -8.54600 -6.46280 0.43292 0.78412 0.88063 1.13384 1.37865 1.46294 1.53754 2.03476 2.10304 2.22453 2.75326 2.82584 3.55801 3.60381 3.69677 3.99298 4.05798 4.18118 4.28212 4.29811 4.43857 4.49700 4.69258 4.72056 4.73629 4.83874 4.89416 4.97721 5.01377 5.03510 5.10968 5.18175 5.23706 5.25821 5.30332 5.31192 5.52883 5.59386 5.61184 5.64954 5.84454 6.04597 6.05189 6.15335 6.26157 6.41068 6.62299 6.90166 6.92302 7.07606 8.38852 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.004156 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.423982 B = 6735.270697 C = 8602.202226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.104 4.104 4 H 0.057 0.943 5 C -0.148 4.148 6 C -0.104 4.104 7 C 0.111 3.889 8 H 0.164 0.836 9 N -0.693 5.693 10 C 0.695 3.305 11 O -0.563 6.563 12 N -0.523 5.523 13 C 0.135 3.865 14 C -0.242 4.242 15 C -0.099 4.099 16 C -0.174 4.174 17 C 0.088 3.912 18 C -0.497 4.497 19 H 0.071 0.929 20 C 0.031 3.969 21 N -0.839 5.839 22 Si 0.990 3.010 23 H -0.261 1.261 24 H -0.261 1.261 25 H -0.266 1.266 26 C -0.242 4.242 27 C 0.503 3.497 28 O -0.476 6.476 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.127 0.873 39 H 0.458 0.542 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.286 0.714 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -8.741 19.257 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.123 4.123 4 H 0.075 0.925 5 C -0.205 4.205 6 C -0.143 4.143 7 C 0.003 3.997 8 H 0.181 0.819 9 N -0.360 5.360 10 C 0.396 3.604 11 O -0.439 6.439 12 N -0.261 5.261 13 C 0.044 3.956 14 C -0.262 4.262 15 C -0.118 4.118 16 C -0.193 4.193 17 C 0.085 3.915 18 C -0.527 4.527 19 H 0.089 0.911 20 C -0.182 4.182 21 N -0.466 5.466 22 Si 0.810 3.190 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.191 1.191 26 C -0.263 4.263 27 C 0.293 3.707 28 O -0.346 6.346 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.145 0.855 39 H 0.307 0.693 40 H 0.157 0.843 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.097 0.903 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.697 -8.608 18.591 20.664 hybrid contribution -0.257 0.216 -0.851 0.915 sum -2.954 -8.392 17.740 19.846 Atomic orbital electron populations 1.21838 0.95885 1.01815 1.01752 1.21507 0.96054 0.95268 1.02338 1.21266 0.93580 0.97573 0.99921 0.92455 1.21938 1.02218 1.00243 0.96116 1.21883 0.96674 0.90759 1.04948 1.22384 0.80948 1.01898 0.94452 0.81889 1.45366 1.07578 1.66971 1.16082 1.16025 0.83622 0.78683 0.82084 1.90846 1.18587 1.59088 1.75400 1.43952 1.09894 1.56787 1.15424 1.17624 0.95415 1.00055 0.82481 1.21187 0.96065 1.11444 0.97538 1.20956 0.98193 0.98609 0.93996 1.21670 0.91827 1.04828 1.01022 1.17831 0.93968 0.89025 0.90654 1.19736 1.00753 1.39359 0.92870 0.91073 1.26746 1.01293 0.92098 0.98039 1.69816 1.31375 1.35425 1.09975 0.85045 0.77071 0.78874 0.77982 1.18480 1.18503 1.19121 1.21459 0.96542 1.09590 0.98750 1.21869 0.83490 0.76722 0.88641 1.90711 1.22212 1.50350 1.71342 0.94412 0.92171 0.91433 0.93201 0.89816 0.92181 0.90207 0.92681 0.92337 0.85507 0.69289 0.84283 0.85961 0.86370 0.90279 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.67 71.98 0.70 -1.70 16 2 C -0.11 -1.70 5.40 30.59 0.17 -1.53 16 3 C -0.10 -1.73 2.32 -10.79 -0.03 -1.76 16 4 H 0.06 1.41 6.20 -2.39 -0.01 1.39 16 5 C -0.15 -1.75 8.74 71.98 0.63 -1.12 16 6 C -0.10 -1.56 4.52 30.60 0.14 -1.42 16 7 C 0.11 2.13 3.60 44.37 0.16 2.29 16 8 H 0.16 2.11 6.48 -2.38 -0.02 2.09 16 9 N -0.69 -13.71 6.24 -459.59 -2.87 -16.58 16 10 C 0.69 23.32 8.54 179.44 1.53 24.86 16 11 O -0.56 -22.41 14.64 -3.85 -0.06 -22.47 16 12 N -0.52 -20.57 2.83 -594.91 -1.68 -22.26 16 13 C 0.13 6.61 6.55 38.03 0.25 6.86 16 14 C -0.24 -11.89 9.27 22.57 0.21 -11.68 16 15 C -0.10 -4.93 10.02 22.20 0.22 -4.71 16 16 C -0.17 -9.62 8.66 22.75 0.20 -9.42 16 17 C 0.09 5.07 5.55 -21.31 -0.12 4.95 16 18 C -0.50 -28.34 9.05 23.46 0.21 -28.13 16 19 H 0.07 3.98 7.85 -2.91 -0.02 3.96 16 20 C 0.03 1.61 5.41 85.26 0.46 2.07 16 21 N -0.84 -45.33 10.61 21.82 0.23 -45.10 16 22 Si 0.99 40.12 29.56 68.60 2.03 42.15 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 C -0.24 -13.11 9.06 22.84 0.21 -12.91 16 27 C 0.50 16.90 7.36 87.94 0.65 17.55 16 28 O -0.48 -18.90 13.32 -2.90 -0.04 -18.94 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.88 6.46 -2.38 -0.02 0.87 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.74 6.34 -2.38 -0.02 0.73 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.66 6.71 -2.39 -0.02 0.64 16 37 H 0.06 1.11 8.13 -2.39 -0.02 1.10 16 38 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.46 5.31 8.96 -92.71 -0.83 4.48 16 40 H 0.14 6.61 5.15 -2.91 -0.01 6.60 16 41 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 42 H 0.12 6.75 6.14 -2.91 -0.02 6.73 16 43 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 44 H 0.12 6.54 5.33 -2.91 -0.02 6.52 16 Total: -1.00 -72.83 351.19 3.41 -69.43 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.21 Total: 29.57 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.58 Total: -15.81 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -4.32 Total: -83.94 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.10 Total: -41.41 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -72.83 3.41 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583322578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.541 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds