Wall clock time and date at job start Tue Mar 31 2020 10:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 H 1.09000 * 109.29925 * 305.00133 * 3 2 1 5 5 C 1.52923 * 109.29776 * 185.42268 * 3 2 1 6 6 C 1.53277 * 108.71206 * 188.74146 * 5 3 2 7 7 H 1.09000 * 109.70564 * 187.46098 * 6 5 3 8 8 C 1.50701 * 109.81435 * 308.10222 * 6 5 3 9 9 O 1.21286 * 120.00044 * 95.07177 * 8 6 5 10 10 N 1.34774 * 120.00263 * 275.07645 * 8 6 5 11 11 C 1.39128 * 120.00376 * 185.36050 * 10 8 6 12 12 C 1.38638 * 120.28139 * 20.49703 * 11 10 8 13 13 C 1.38225 * 120.03371 * 179.76585 * 12 11 10 14 14 C 1.38869 * 120.61088 * 0.51474 * 13 12 11 15 15 C 1.36457 * 120.57789 * 359.74129 * 14 13 12 16 16 C 1.40732 * 119.94805 * 0.02562 * 15 14 13 17 17 C 1.41067 * 120.30592 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99964 * 205.94415 * 17 16 15 19 19 C 1.39961 * 120.00005 * 25.94671 * 17 16 15 20 20 N 1.30854 * 119.99673 * 19.54992 * 19 17 16 21 21 Si 1.86795 * 120.00170 * 199.55495 * 19 17 16 22 22 H 1.48496 * 109.47350 * 89.99232 * 21 19 17 23 23 H 1.48500 * 109.47219 * 209.99827 * 21 19 17 24 24 H 1.48509 * 109.46975 * 329.99599 * 21 19 17 25 25 C 1.53072 * 108.24679 * 67.81150 * 6 5 3 26 26 C 1.50179 * 109.89036 * 311.03148 * 25 6 5 27 27 O 1.21283 * 118.24396 * 197.55918 * 26 25 6 28 28 N 1.33356 * 123.50765 * 17.58867 * 26 25 6 29 29 H 1.09000 * 109.46861 * 299.99459 * 1 2 3 30 30 H 1.08997 * 109.47388 * 60.00186 * 1 2 3 31 31 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46978 * 240.00081 * 2 1 3 33 33 H 1.09003 * 109.47489 * 120.00244 * 2 1 3 34 34 H 1.08997 * 109.60205 * 308.68805 * 5 3 2 35 35 H 1.08999 * 109.60750 * 69.17902 * 5 3 2 36 36 H 0.97004 * 119.99619 * 5.35841 * 10 8 6 37 37 H 1.08001 * 119.98494 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.69607 * 180.25419 * 13 12 11 39 39 H 1.08000 * 119.70902 * 179.76520 * 14 13 12 40 40 H 1.08002 * 120.02933 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99533 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.39930 * 190.90765 * 25 6 5 43 43 H 1.08990 * 109.33175 * 71.12243 * 25 6 5 44 44 H 0.97000 * 117.94172 * 177.79491 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9788 -0.8427 5 6 3.5631 1.4401 -0.1364 6 6 4.0788 2.8666 0.0842 7 1 5.1448 2.9106 -0.1388 8 6 3.3329 3.8234 -0.8097 9 8 2.3669 4.4218 -0.3855 10 7 3.7390 4.0142 -2.0806 11 6 3.1212 4.9780 -2.8712 12 6 2.4103 6.0132 -2.2838 13 6 1.8025 6.9707 -3.0740 14 6 1.8868 6.9024 -4.4585 15 6 2.5758 5.8915 -5.0630 16 6 3.2078 4.9065 -4.2814 17 6 3.9215 3.8578 -4.8984 18 1 4.0427 2.9137 -4.3881 19 6 4.4726 4.0408 -6.1719 20 7 4.6703 5.2498 -6.6316 21 14 4.9257 2.5591 -7.2152 22 1 3.7610 2.1651 -8.0478 23 1 6.0697 2.9054 -8.0965 24 1 5.3068 1.4287 -6.3307 25 6 3.8429 3.2402 1.5498 26 6 2.4286 2.9173 1.9381 27 8 1.9761 3.4330 2.9382 28 7 1.6440 2.0934 1.2424 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9959 0.7728 0.6088 35 1 3.8403 1.1050 -1.1359 36 1 4.4622 3.4794 -2.4440 37 1 2.3347 6.0739 -1.2081 38 1 1.2536 7.7770 -2.6106 39 1 1.4032 7.6563 -5.0620 40 1 2.6360 5.8472 -6.1404 41 1 5.0519 5.3766 -7.5143 42 1 4.0208 4.3072 1.6845 43 1 4.5295 2.6762 2.1809 44 1 0.7537 1.9166 1.5846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588986470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:38 Heat of formation + Delta-G solvation = -64.026134 kcal Electronic energy + Delta-G solvation = -27122.738134 eV Core-core repulsion = 23424.927600 eV Total energy + Delta-G solvation = -3697.810534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93396 -39.14609 -37.37332 -36.71507 -33.93300 -33.84646 -33.65085 -31.98796 -29.69896 -29.11656 -28.53467 -25.64956 -24.98322 -23.41146 -21.84556 -21.53173 -20.90437 -19.97173 -18.61765 -17.43122 -17.24171 -16.52103 -16.25396 -16.03822 -15.35165 -15.21919 -14.84581 -14.34931 -14.19639 -13.87495 -13.78969 -13.61701 -13.30758 -12.99121 -12.78146 -12.56412 -12.39960 -12.06549 -11.82243 -11.69465 -11.50053 -11.44886 -11.28637 -11.26112 -11.09137 -10.99738 -10.86533 -10.57356 -10.15758 -9.76355 -9.59243 -9.41730 -9.26564 -8.90960 -8.68738 -7.46506 -7.04309 -6.74390 -4.43457 2.52512 2.79520 2.90363 2.98723 2.99557 3.16892 3.35805 3.47366 3.75476 3.81324 4.44336 4.46277 4.51995 4.57366 4.73494 4.95891 5.02095 5.12647 5.27485 5.35313 5.44995 5.51288 5.61228 5.63416 5.67094 5.75399 5.83693 5.84251 5.99282 6.12138 6.32930 6.49464 6.59279 6.83804 6.93230 6.99730 7.09809 7.24800 7.53005 7.58026 7.66710 7.90954 8.05490 8.07833 8.37814 8.42791 8.49670 8.74745 8.77001 8.96894 10.06624 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.004430 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.885299 B = 6319.320441 C = 7307.350229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.137 3.863 4 H 0.081 0.919 5 C -0.120 4.120 6 C -0.114 4.114 7 H 0.105 0.895 8 C 0.494 3.506 9 O -0.527 6.527 10 N -0.630 5.630 11 C 0.015 3.985 12 C -0.100 4.100 13 C -0.225 4.225 14 C -0.114 4.114 15 C -0.152 4.152 16 C 0.102 3.898 17 C -0.472 4.472 18 H 0.075 0.925 19 C 0.081 3.919 20 N -0.787 5.787 21 Si 0.905 3.095 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.115 4.115 26 C 0.540 3.460 27 O -0.568 6.568 28 N -0.706 5.706 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.282 0.718 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -11.176 7.183 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.031 3.969 4 H 0.099 0.901 5 C -0.158 4.158 6 C -0.136 4.136 7 H 0.123 0.877 8 C 0.280 3.720 9 O -0.405 6.405 10 N -0.271 5.271 11 C -0.079 4.079 12 C -0.120 4.120 13 C -0.245 4.245 14 C -0.133 4.133 15 C -0.172 4.172 16 C 0.098 3.902 17 C -0.502 4.502 18 H 0.093 0.907 19 C -0.138 4.138 20 N -0.412 5.412 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.155 4.155 26 C 0.328 3.672 27 O -0.448 6.448 28 N -0.358 5.358 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.240 0.760 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.514 -10.317 7.724 12.898 hybrid contribution 0.334 -0.878 -0.957 1.341 sum 0.848 -11.195 6.767 13.108 Atomic orbital electron populations 1.21799 0.95393 1.01928 1.02246 1.21908 0.96692 0.95506 1.03046 1.21029 0.94969 0.93304 0.87571 0.90123 1.21892 0.94623 0.95084 1.04237 1.21472 1.01885 0.95320 0.94950 0.87668 1.20318 0.85128 0.83686 0.82890 1.90647 1.26873 1.48615 1.74381 1.42950 1.36072 1.36739 1.11347 1.17773 1.07030 0.93109 0.89986 1.20989 0.98171 0.93130 0.99724 1.20341 1.08961 1.01607 0.93550 1.20463 1.00211 0.98366 0.94270 1.20786 1.00217 0.96744 0.99440 1.17326 0.91284 0.93237 0.88362 1.19245 1.30841 0.99342 1.00752 0.90669 1.25844 0.93464 0.96618 0.97896 1.69844 1.31168 1.22437 1.17766 0.86364 0.78712 0.81929 0.80012 1.19281 1.20341 1.18670 1.21477 0.94288 1.04888 0.94896 1.19762 0.88117 0.77081 0.82269 1.90715 1.74786 1.51646 1.27636 1.45407 1.18023 1.47386 1.24960 0.92802 0.92066 0.92332 0.90251 0.91305 0.89763 0.89039 0.76036 0.85827 0.89286 0.89491 0.86645 0.90731 0.87750 0.87885 0.76893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.76 37.16 0.36 -1.01 16 2 C -0.13 -1.16 5.58 -26.73 -0.15 -1.30 16 3 C 0.14 1.56 2.38 -68.38 -0.16 1.40 16 4 H 0.08 1.16 7.24 -51.93 -0.38 0.79 16 5 C -0.12 -1.16 4.92 -26.63 -0.13 -1.29 16 6 C -0.11 -1.36 3.07 -91.59 -0.28 -1.64 16 7 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 8 C 0.49 8.43 5.49 -10.99 -0.06 8.37 16 9 O -0.53 -10.92 11.50 5.55 0.06 -10.85 16 10 N -0.63 -11.81 5.16 -9.48 -0.05 -11.85 16 11 C 0.01 0.35 6.52 -83.17 -0.54 -0.20 16 12 C -0.10 -2.39 8.76 -39.44 -0.35 -2.74 16 13 C -0.22 -5.26 10.04 -39.35 -0.39 -5.65 16 14 C -0.11 -2.69 9.97 -39.99 -0.40 -3.09 16 15 C -0.15 -3.82 8.64 -39.28 -0.34 -4.16 16 16 C 0.10 2.52 5.56 -106.65 -0.59 1.93 16 17 C -0.47 -11.15 8.37 -37.86 -0.32 -11.47 16 18 H 0.08 1.63 7.08 -52.49 -0.37 1.26 16 19 C 0.08 1.85 5.08 -17.32 -0.09 1.77 16 20 N -0.79 -19.06 11.16 55.55 0.62 -18.43 16 21 Si 0.91 17.06 29.60 -169.99 -5.03 12.03 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 25 C -0.12 -1.46 5.21 -28.10 -0.15 -1.60 16 26 C 0.54 8.45 6.38 -11.87 -0.08 8.37 16 27 O -0.57 -11.12 17.78 5.55 0.10 -11.02 16 28 N -0.71 -9.42 4.91 -54.86 -0.27 -9.69 16 29 H 0.05 0.48 6.66 -51.93 -0.35 0.13 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 6.74 7.39 -40.82 -0.30 6.44 16 37 H 0.12 2.97 5.47 -52.49 -0.29 2.68 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.12 2.97 6.33 -52.49 -0.33 2.63 16 41 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 42 H 0.10 1.45 8.10 -51.92 -0.42 1.03 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.39 5.08 7.01 -40.82 -0.29 4.79 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -31.00 351.95 -9.01 -40.01 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.08 Total: 16.83 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -3.66 Total: -12.32 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.30 Total: -39.98 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.88 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.00 -9.01 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588986470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.019 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds