Wall clock time and date at job start Tue Mar 31 2020 10:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 H 1.09000 * 109.29925 * 305.00133 * 3 2 1 5 5 C 1.52923 * 109.29776 * 185.42268 * 3 2 1 6 6 C 1.53277 * 108.71206 * 188.74146 * 5 3 2 7 7 H 1.09000 * 109.70564 * 187.46098 * 6 5 3 8 8 C 1.50701 * 109.81435 * 308.10222 * 6 5 3 9 9 O 1.21286 * 120.00044 * 95.07177 * 8 6 5 10 10 N 1.34774 * 120.00263 * 275.07645 * 8 6 5 11 11 C 1.39128 * 120.00376 * 185.36050 * 10 8 6 12 12 C 1.38638 * 120.28139 * 20.49703 * 11 10 8 13 13 C 1.38225 * 120.03371 * 179.76585 * 12 11 10 14 14 C 1.38869 * 120.61088 * 0.51474 * 13 12 11 15 15 C 1.36457 * 120.57789 * 359.74129 * 14 13 12 16 16 C 1.40732 * 119.94805 * 0.02562 * 15 14 13 17 17 C 1.41067 * 120.30592 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99964 * 205.94415 * 17 16 15 19 19 C 1.39961 * 120.00005 * 25.94671 * 17 16 15 20 20 N 1.30854 * 119.99673 * 19.54992 * 19 17 16 21 21 Si 1.86795 * 120.00170 * 199.55495 * 19 17 16 22 22 H 1.48496 * 109.47350 * 89.99232 * 21 19 17 23 23 H 1.48500 * 109.47219 * 209.99827 * 21 19 17 24 24 H 1.48509 * 109.46975 * 329.99599 * 21 19 17 25 25 C 1.53072 * 108.24679 * 67.81150 * 6 5 3 26 26 C 1.50179 * 109.89036 * 311.03148 * 25 6 5 27 27 O 1.21283 * 118.24396 * 197.55918 * 26 25 6 28 28 N 1.33356 * 123.50765 * 17.58867 * 26 25 6 29 29 H 1.09000 * 109.46861 * 299.99459 * 1 2 3 30 30 H 1.08997 * 109.47388 * 60.00186 * 1 2 3 31 31 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46978 * 240.00081 * 2 1 3 33 33 H 1.09003 * 109.47489 * 120.00244 * 2 1 3 34 34 H 1.08997 * 109.60205 * 308.68805 * 5 3 2 35 35 H 1.08999 * 109.60750 * 69.17902 * 5 3 2 36 36 H 0.97004 * 119.99619 * 5.35841 * 10 8 6 37 37 H 1.08001 * 119.98494 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.69607 * 180.25419 * 13 12 11 39 39 H 1.08000 * 119.70902 * 179.76520 * 14 13 12 40 40 H 1.08002 * 120.02933 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99533 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.39930 * 190.90765 * 25 6 5 43 43 H 1.08990 * 109.33175 * 71.12243 * 25 6 5 44 44 H 0.97000 * 117.94172 * 177.79491 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9788 -0.8427 5 6 3.5631 1.4401 -0.1364 6 6 4.0788 2.8666 0.0842 7 1 5.1448 2.9106 -0.1388 8 6 3.3329 3.8234 -0.8097 9 8 2.3669 4.4218 -0.3855 10 7 3.7390 4.0142 -2.0806 11 6 3.1212 4.9780 -2.8712 12 6 2.4103 6.0132 -2.2838 13 6 1.8025 6.9707 -3.0740 14 6 1.8868 6.9024 -4.4585 15 6 2.5758 5.8915 -5.0630 16 6 3.2078 4.9065 -4.2814 17 6 3.9215 3.8578 -4.8984 18 1 4.0427 2.9137 -4.3881 19 6 4.4726 4.0408 -6.1719 20 7 4.6703 5.2498 -6.6316 21 14 4.9257 2.5591 -7.2152 22 1 3.7610 2.1651 -8.0478 23 1 6.0697 2.9054 -8.0965 24 1 5.3068 1.4287 -6.3307 25 6 3.8429 3.2402 1.5498 26 6 2.4286 2.9173 1.9381 27 8 1.9761 3.4330 2.9382 28 7 1.6440 2.0934 1.2424 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9959 0.7728 0.6088 35 1 3.8403 1.1050 -1.1359 36 1 4.4622 3.4794 -2.4440 37 1 2.3347 6.0739 -1.2081 38 1 1.2536 7.7770 -2.6106 39 1 1.4032 7.6563 -5.0620 40 1 2.6360 5.8472 -6.1404 41 1 5.0519 5.3766 -7.5143 42 1 4.0208 4.3072 1.6845 43 1 4.5295 2.6762 2.1809 44 1 0.7537 1.9166 1.5846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588986470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:37 Heat of formation + Delta-G solvation = -83.944402 kcal Electronic energy + Delta-G solvation = -27123.601855 eV Core-core repulsion = 23424.927600 eV Total energy + Delta-G solvation = -3698.674255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13220 -40.59052 -38.97352 -37.88526 -35.52486 -35.44558 -34.83386 -32.97940 -31.51799 -30.31470 -29.95352 -27.24520 -26.23669 -24.48212 -23.32971 -22.71200 -22.29003 -21.44945 -19.92049 -19.15733 -18.43501 -17.95672 -17.60482 -17.21219 -16.85294 -16.44184 -16.17053 -15.94319 -15.27382 -15.20283 -14.88851 -14.67628 -14.51894 -14.42027 -14.31465 -13.97709 -13.61164 -13.44889 -13.25029 -12.94667 -12.85904 -12.82636 -12.62652 -12.34405 -12.12481 -12.10220 -11.89989 -11.85275 -11.73041 -11.50817 -11.10551 -10.98697 -10.77292 -10.26755 -10.01646 -9.34438 -8.80336 -8.49303 -6.25251 0.85460 1.06142 1.45633 1.57556 1.57950 1.71767 1.89362 2.23598 2.36421 2.46323 2.78525 3.52911 3.58101 3.60022 3.76654 3.77949 4.02200 4.19778 4.22655 4.43555 4.50193 4.54671 4.60654 4.66087 4.74697 4.77984 4.79444 4.85981 4.94641 5.07251 5.08866 5.10840 5.24391 5.25414 5.30287 5.38408 5.47411 5.80285 5.83655 5.85715 6.14692 6.20736 6.26440 6.44495 6.67104 6.77403 6.98105 7.04871 7.27130 7.45926 8.35873 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.004430 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.885299 B = 6319.320441 C = 7307.350229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C 0.132 3.868 4 H 0.044 0.956 5 C -0.116 4.116 6 C -0.102 4.102 7 H 0.145 0.855 8 C 0.493 3.507 9 O -0.567 6.567 10 N -0.629 5.629 11 C 0.016 3.984 12 C -0.118 4.118 13 C -0.237 4.237 14 C -0.121 4.121 15 C -0.177 4.177 16 C 0.075 3.925 17 C -0.487 4.487 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.822 5.822 21 Si 0.979 3.021 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.244 1.244 25 C -0.113 4.113 26 C 0.529 3.471 27 O -0.620 6.620 28 N -0.701 5.701 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.415 0.585 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.288 0.712 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -14.382 7.243 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.162 4.162 3 C 0.027 3.973 4 H 0.062 0.938 5 C -0.154 4.154 6 C -0.123 4.123 7 H 0.163 0.837 8 C 0.282 3.718 9 O -0.447 6.447 10 N -0.271 5.271 11 C -0.079 4.079 12 C -0.138 4.138 13 C -0.256 4.256 14 C -0.140 4.140 15 C -0.198 4.198 16 C 0.072 3.928 17 C -0.516 4.516 18 H 0.110 0.890 19 C -0.176 4.176 20 N -0.447 5.447 21 Si 0.800 3.200 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.167 1.167 25 C -0.153 4.153 26 C 0.318 3.682 27 O -0.504 6.504 28 N -0.350 5.350 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.253 0.747 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.164 0.836 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.528 -13.558 7.774 15.832 hybrid contribution -0.361 0.164 -0.957 1.035 sum 2.168 -13.394 6.817 15.185 Atomic orbital electron populations 1.21824 0.96042 1.02655 1.01135 1.21870 0.96112 0.93555 1.04661 1.21170 0.96660 0.94311 0.85161 0.93801 1.22029 0.92784 0.93932 1.06664 1.21533 1.03259 0.94894 0.92661 0.83707 1.21351 0.84579 0.83483 0.82419 1.90633 1.28827 1.50296 1.74901 1.42952 1.36234 1.36180 1.11728 1.17881 1.06287 0.93594 0.90149 1.21121 0.99141 0.93967 0.99576 1.20582 1.09252 1.02147 0.93659 1.20652 1.00143 0.98569 0.94621 1.20828 1.01774 0.98159 0.98993 1.17676 0.92035 0.93905 0.89224 1.19562 1.30767 0.99590 1.01665 0.88976 1.26731 0.92889 0.99300 0.98645 1.69915 1.31688 1.24717 1.18381 0.85235 0.78061 0.78528 0.78154 1.19702 1.20080 1.16701 1.21546 0.93053 1.04564 0.96090 1.20414 0.89494 0.76588 0.81707 1.90685 1.76063 1.53623 1.29992 1.45507 1.17779 1.46648 1.25090 0.93414 0.93764 0.90651 0.88573 0.89519 0.85990 0.87179 0.74730 0.86368 0.87734 0.87614 0.87971 0.90181 0.89522 0.83572 0.77143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.76 71.98 0.70 -1.91 16 2 C -0.12 -1.79 5.58 30.59 0.17 -1.62 16 3 C 0.13 2.75 2.38 45.11 0.11 2.86 16 4 H 0.04 1.26 7.24 -2.39 -0.02 1.24 16 5 C -0.12 -1.75 4.92 30.66 0.15 -1.60 16 6 C -0.10 -2.08 3.07 -11.42 -0.04 -2.12 16 7 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 8 C 0.49 16.35 5.49 87.66 0.48 16.83 16 9 O -0.57 -23.87 11.50 -3.05 -0.04 -23.91 16 10 N -0.63 -23.01 5.16 -302.28 -1.56 -24.57 16 11 C 0.02 0.75 6.52 38.88 0.25 1.01 16 12 C -0.12 -5.78 8.76 22.36 0.20 -5.58 16 13 C -0.24 -11.35 10.04 22.42 0.23 -11.13 16 14 C -0.12 -5.86 9.97 22.00 0.22 -5.64 16 15 C -0.18 -9.19 8.64 22.46 0.19 -9.00 16 16 C 0.08 3.80 5.56 -21.18 -0.12 3.69 16 17 C -0.49 -22.72 8.37 23.38 0.20 -22.52 16 18 H 0.09 3.84 7.08 -2.91 -0.02 3.82 16 19 C 0.04 1.83 5.08 85.26 0.43 2.26 16 20 N -0.82 -40.01 11.16 21.83 0.24 -39.77 16 21 Si 0.98 33.69 29.60 68.60 2.03 35.72 16 22 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 23 H -0.28 -9.31 7.11 99.48 0.71 -8.61 16 24 H -0.24 -7.62 7.11 99.48 0.71 -6.91 16 25 C -0.11 -2.58 5.21 29.71 0.15 -2.42 16 26 C 0.53 16.20 6.38 87.71 0.56 16.76 16 27 O -0.62 -24.70 17.78 -3.04 -0.05 -24.76 16 28 N -0.70 -18.19 4.91 -446.65 -2.19 -20.38 16 29 H 0.05 0.82 6.66 -2.39 -0.02 0.81 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.42 13.01 7.39 -92.71 -0.68 12.33 16 37 H 0.12 5.89 5.47 -2.91 -0.02 5.87 16 38 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 40 H 0.10 5.46 6.33 -2.91 -0.02 5.44 16 41 H 0.29 12.76 8.30 -92.70 -0.77 11.99 16 42 H 0.09 2.33 8.10 -2.38 -0.02 2.31 16 43 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.39 10.19 7.01 -92.71 -0.65 9.54 16 Total: -1.00 -71.54 351.95 2.03 -69.51 By element: Atomic # 1 Polarization: 48.59 SS G_CDS: -0.29 Total: 48.30 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.89 Total: -20.13 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.51 Total: -84.72 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.09 Total: -48.67 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Total: -71.54 2.03 -69.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588986470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.438 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds