Wall clock time and date at job start Tue Mar 31 2020 10:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 H 1.09004 * 109.29333 * 54.58426 * 3 2 1 5 5 C 1.52896 * 109.14939 * 174.01977 * 3 2 1 6 6 C 1.53340 * 108.68868 * 170.90700 * 5 3 2 7 7 H 1.08993 * 109.67870 * 52.28984 * 6 5 3 8 8 C 1.50707 * 109.67261 * 172.78315 * 6 5 3 9 9 O 1.21283 * 119.99343 * 359.50010 * 8 6 5 10 10 N 1.34767 * 120.00116 * 179.49800 * 8 6 5 11 11 C 1.39128 * 119.99819 * 176.25200 * 10 8 6 12 12 C 1.38643 * 120.28628 * 25.67353 * 11 10 8 13 13 C 1.38220 * 120.03897 * 180.25161 * 12 11 10 14 14 C 1.38868 * 120.60990 * 359.44209 * 13 12 11 15 15 C 1.36461 * 120.58024 * 0.55451 * 14 13 12 16 16 C 1.40737 * 119.94090 * 359.73052 * 15 14 13 17 17 C 1.41079 * 120.30012 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99746 * 214.40394 * 17 16 15 19 19 C 1.39959 * 120.00054 * 34.39496 * 17 16 15 20 20 N 1.30852 * 119.99764 * 5.43192 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 185.42928 * 19 17 16 22 22 H 1.48504 * 109.46953 * 90.00405 * 21 19 17 23 23 H 1.48500 * 109.46669 * 209.99957 * 21 19 17 24 24 H 1.48499 * 109.47167 * 329.99939 * 21 19 17 25 25 C 1.53069 * 108.45779 * 292.52951 * 6 5 3 26 26 C 1.50178 * 109.88798 * 48.88753 * 25 6 5 27 27 O 1.21275 * 118.24692 * 162.43528 * 26 25 6 28 28 N 1.33352 * 123.50700 * 342.41691 * 26 25 6 29 29 H 1.09007 * 109.47416 * 59.99517 * 1 2 3 30 30 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47037 * 299.99977 * 1 2 3 32 32 H 1.08997 * 109.46867 * 240.00778 * 2 1 3 33 33 H 1.08995 * 109.47420 * 120.00046 * 2 1 3 34 34 H 1.09000 * 109.55033 * 51.16544 * 5 3 2 35 35 H 1.08998 * 109.62842 * 290.69155 * 5 3 2 36 36 H 0.96999 * 120.00702 * 356.26017 * 10 8 6 37 37 H 1.08000 * 119.98036 * 359.96392 * 12 11 10 38 38 H 1.07994 * 119.69972 * 179.69505 * 13 12 11 39 39 H 1.08001 * 119.71308 * 180.28973 * 14 13 12 40 40 H 1.08005 * 120.03335 * 179.74797 * 15 14 13 41 41 H 0.97002 * 119.99487 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.40535 * 169.01138 * 25 6 5 43 43 H 1.08996 * 109.40613 * 288.76076 * 25 6 5 44 44 H 0.97001 * 117.94896 * 182.22055 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9808 0.8385 5 6 3.5615 1.4366 0.1505 6 6 4.0835 2.8601 -0.0785 7 1 3.5434 3.5566 0.5627 8 6 5.5560 2.9174 0.2373 9 8 6.1336 1.9214 0.6182 10 7 6.2308 4.0754 0.0962 11 6 7.5713 4.1483 0.4616 12 6 8.3597 3.0079 0.4590 13 6 9.6895 3.0852 0.8279 14 6 10.2526 4.3011 1.1925 15 6 9.4998 5.4393 1.2039 16 6 8.1418 5.3868 0.8383 17 6 7.3566 6.5589 0.8468 18 1 6.3126 6.5075 1.1185 19 6 7.9306 7.7883 0.5033 20 7 9.1652 7.8362 0.0722 21 14 6.9342 9.3606 0.6601 22 1 7.1235 9.9332 2.0172 23 1 7.3913 10.3398 -0.3585 24 1 5.4961 9.0587 0.4463 25 6 3.8566 3.2292 -1.5466 26 6 2.4434 2.9093 -1.9413 27 8 1.9977 3.4228 -2.9455 28 7 1.6524 2.0906 -1.2467 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9984 0.7636 -0.5874 35 1 3.8289 1.1060 1.1541 36 1 5.7820 4.8582 -0.2598 37 1 7.9333 2.0577 0.1731 38 1 10.2974 2.1926 0.8287 39 1 11.2944 4.3457 1.4737 40 1 9.9458 6.3795 1.4929 41 1 9.5628 8.6882 -0.1662 42 1 4.0385 4.2951 -1.6843 43 1 4.5447 2.6618 -2.1732 44 1 0.7635 1.9151 -1.5930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588986479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:42 Heat of formation + Delta-G solvation = -68.553019 kcal Electronic energy + Delta-G solvation = -26339.215365 eV Core-core repulsion = 22641.208530 eV Total energy + Delta-G solvation = -3698.006835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85160 -39.47415 -37.50729 -36.95538 -34.12374 -33.77273 -33.59122 -32.25328 -29.66732 -29.27979 -28.44171 -25.75481 -25.12671 -23.48884 -22.05758 -21.49819 -20.61755 -19.56133 -19.20725 -17.61568 -17.35569 -16.68738 -16.55899 -16.09950 -15.47902 -15.12122 -14.77380 -14.64695 -14.30472 -14.05629 -13.87373 -13.73226 -13.50024 -13.06730 -12.90507 -12.66249 -12.34684 -12.15753 -11.78367 -11.69575 -11.48163 -11.37985 -11.29223 -11.23012 -11.18635 -10.99404 -10.93821 -10.52185 -10.29132 -9.99814 -9.76242 -9.35149 -9.27787 -9.26677 -8.72052 -7.36166 -6.97738 -6.67733 -4.45862 2.50696 2.55022 2.83809 3.04247 3.05491 3.09757 3.17165 3.35034 3.68884 3.88808 4.27832 4.44452 4.50805 4.62701 4.63805 4.76541 4.83767 4.96703 5.11118 5.27066 5.31163 5.40647 5.56564 5.59794 5.60947 5.61990 5.76826 5.84171 5.89349 6.06114 6.30885 6.49227 6.57135 6.61508 6.86490 7.03288 7.12275 7.17302 7.24122 7.63295 7.66386 7.91622 8.05318 8.08045 8.08216 8.38106 8.52377 8.76043 8.80863 8.95587 10.20087 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.003724 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.487402 B = 7516.587209 C = 8900.147552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.138 3.862 4 H 0.078 0.922 5 C -0.110 4.110 6 C -0.110 4.110 7 H 0.104 0.896 8 C 0.502 3.498 9 O -0.536 6.536 10 N -0.631 5.631 11 C 0.021 3.979 12 C -0.104 4.104 13 C -0.217 4.217 14 C -0.119 4.119 15 C -0.138 4.138 16 C 0.100 3.900 17 C -0.476 4.476 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.804 5.804 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.130 4.130 26 C 0.526 3.474 27 O -0.557 6.557 28 N -0.716 5.716 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.405 0.595 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 -9.187 0.575 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.033 3.967 4 H 0.096 0.904 5 C -0.148 4.148 6 C -0.132 4.132 7 H 0.122 0.878 8 C 0.289 3.711 9 O -0.415 6.415 10 N -0.272 5.272 11 C -0.072 4.072 12 C -0.124 4.124 13 C -0.237 4.237 14 C -0.138 4.138 15 C -0.158 4.158 16 C 0.096 3.904 17 C -0.507 4.507 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.431 5.431 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.170 4.170 26 C 0.314 3.686 27 O -0.436 6.436 28 N -0.369 5.369 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.241 0.759 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.757 -9.386 0.322 15.841 hybrid contribution -0.820 1.188 -0.187 1.455 sum -13.576 -8.198 0.135 15.860 Atomic orbital electron populations 1.21815 0.95479 1.02171 1.01875 1.21922 0.96313 0.95519 1.03659 1.21104 0.95768 0.93548 0.86257 0.90384 1.21756 0.92383 0.95535 1.05125 1.21442 0.94883 0.99673 0.97182 0.87823 1.20240 0.88140 0.83824 0.78941 1.90596 1.69067 1.34792 1.47006 1.42943 1.10744 1.12670 1.60802 1.17886 0.82989 0.95934 1.10437 1.21015 0.93141 0.97570 1.00670 1.20398 0.95156 0.96497 1.11618 1.20519 0.97944 0.93579 1.01787 1.20919 0.94539 0.97122 1.03222 1.17391 0.92954 0.90435 0.89583 1.19265 0.97391 0.91343 1.42663 0.90753 1.25819 0.95007 1.00597 0.92608 1.69778 1.13227 1.27811 1.32251 0.86283 0.80623 0.80779 0.78828 1.19458 1.20292 1.18731 1.21692 0.93944 1.05263 0.96063 1.20051 0.87985 0.77773 0.82822 1.90767 1.74659 1.51751 1.26428 1.45695 1.18202 1.47687 1.25307 0.92843 0.92209 0.92283 0.91020 0.89986 0.90117 0.88533 0.75892 0.85754 0.89152 0.89359 0.86228 0.90939 0.87254 0.87471 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.76 37.16 0.36 -0.49 16 2 C -0.14 -0.87 5.56 -26.73 -0.15 -1.02 16 3 C 0.14 1.09 3.07 -68.38 -0.21 0.88 16 4 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.11 -1.11 3.98 -26.61 -0.11 -1.22 16 6 C -0.11 -1.32 2.61 -91.56 -0.24 -1.56 16 7 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 8 C 0.50 8.51 7.01 -10.99 -0.08 8.43 16 9 O -0.54 -10.62 12.82 5.55 0.07 -10.55 16 10 N -0.63 -12.06 5.03 -9.47 -0.05 -12.11 16 11 C 0.02 0.50 6.48 -83.17 -0.54 -0.04 16 12 C -0.10 -2.43 8.78 -39.44 -0.35 -2.77 16 13 C -0.22 -4.95 10.04 -39.35 -0.39 -5.34 16 14 C -0.12 -2.78 9.97 -39.99 -0.40 -3.18 16 15 C -0.14 -3.49 8.57 -39.28 -0.34 -3.82 16 16 C 0.10 2.52 5.51 -106.65 -0.59 1.93 16 17 C -0.48 -11.62 8.19 -37.86 -0.31 -11.93 16 18 H 0.07 1.71 7.46 -52.49 -0.39 1.32 16 19 C 0.08 1.82 5.31 -17.32 -0.09 1.72 16 20 N -0.80 -20.06 10.97 55.55 0.61 -19.45 16 21 Si 0.91 17.92 29.56 -169.99 -5.03 12.90 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.13 -1.56 5.18 -28.10 -0.15 -1.71 16 26 C 0.53 6.68 7.71 -11.87 -0.09 6.59 16 27 O -0.56 -9.27 17.78 5.56 0.10 -9.17 16 28 N -0.72 -6.85 5.12 -54.86 -0.28 -7.13 16 29 H 0.05 0.29 6.68 -51.92 -0.35 -0.06 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.10 1.01 7.89 -51.93 -0.41 0.60 16 36 H 0.41 7.10 7.35 -40.82 -0.30 6.80 16 37 H 0.12 2.85 5.53 -52.49 -0.29 2.56 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.12 3.11 6.47 -52.48 -0.34 2.77 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 42 H 0.11 1.30 7.87 -51.93 -0.41 0.89 16 43 H 0.11 1.31 8.09 -51.93 -0.42 0.89 16 44 H 0.40 3.43 7.04 -40.82 -0.29 3.14 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -30.30 356.09 -9.00 -39.30 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -6.13 Total: 14.37 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -3.66 Total: -13.53 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.28 Total: -38.68 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.17 Total: -19.72 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.30 -9.00 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588986479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.254 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds