Wall clock time and date at job start Tue Mar 31 2020 10:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 H 1.09004 * 109.29333 * 54.58426 * 3 2 1 5 5 C 1.52896 * 109.14939 * 174.01977 * 3 2 1 6 6 C 1.53340 * 108.68868 * 170.90700 * 5 3 2 7 7 H 1.08993 * 109.67870 * 52.28984 * 6 5 3 8 8 C 1.50707 * 109.67261 * 172.78315 * 6 5 3 9 9 O 1.21283 * 119.99343 * 359.50010 * 8 6 5 10 10 N 1.34767 * 120.00116 * 179.49800 * 8 6 5 11 11 C 1.39128 * 119.99819 * 176.25200 * 10 8 6 12 12 C 1.38643 * 120.28628 * 25.67353 * 11 10 8 13 13 C 1.38220 * 120.03897 * 180.25161 * 12 11 10 14 14 C 1.38868 * 120.60990 * 359.44209 * 13 12 11 15 15 C 1.36461 * 120.58024 * 0.55451 * 14 13 12 16 16 C 1.40737 * 119.94090 * 359.73052 * 15 14 13 17 17 C 1.41079 * 120.30012 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99746 * 214.40394 * 17 16 15 19 19 C 1.39959 * 120.00054 * 34.39496 * 17 16 15 20 20 N 1.30852 * 119.99764 * 5.43192 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 185.42928 * 19 17 16 22 22 H 1.48504 * 109.46953 * 90.00405 * 21 19 17 23 23 H 1.48500 * 109.46669 * 209.99957 * 21 19 17 24 24 H 1.48499 * 109.47167 * 329.99939 * 21 19 17 25 25 C 1.53069 * 108.45779 * 292.52951 * 6 5 3 26 26 C 1.50178 * 109.88798 * 48.88753 * 25 6 5 27 27 O 1.21275 * 118.24692 * 162.43528 * 26 25 6 28 28 N 1.33352 * 123.50700 * 342.41691 * 26 25 6 29 29 H 1.09007 * 109.47416 * 59.99517 * 1 2 3 30 30 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47037 * 299.99977 * 1 2 3 32 32 H 1.08997 * 109.46867 * 240.00778 * 2 1 3 33 33 H 1.08995 * 109.47420 * 120.00046 * 2 1 3 34 34 H 1.09000 * 109.55033 * 51.16544 * 5 3 2 35 35 H 1.08998 * 109.62842 * 290.69155 * 5 3 2 36 36 H 0.96999 * 120.00702 * 356.26017 * 10 8 6 37 37 H 1.08000 * 119.98036 * 359.96392 * 12 11 10 38 38 H 1.07994 * 119.69972 * 179.69505 * 13 12 11 39 39 H 1.08001 * 119.71308 * 180.28973 * 14 13 12 40 40 H 1.08005 * 120.03335 * 179.74797 * 15 14 13 41 41 H 0.97002 * 119.99487 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.40535 * 169.01138 * 25 6 5 43 43 H 1.08996 * 109.40613 * 288.76076 * 25 6 5 44 44 H 0.97001 * 117.94896 * 182.22055 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9808 0.8385 5 6 3.5615 1.4366 0.1505 6 6 4.0835 2.8601 -0.0785 7 1 3.5434 3.5566 0.5627 8 6 5.5560 2.9174 0.2373 9 8 6.1336 1.9214 0.6182 10 7 6.2308 4.0754 0.0962 11 6 7.5713 4.1483 0.4616 12 6 8.3597 3.0079 0.4590 13 6 9.6895 3.0852 0.8279 14 6 10.2526 4.3011 1.1925 15 6 9.4998 5.4393 1.2039 16 6 8.1418 5.3868 0.8383 17 6 7.3566 6.5589 0.8468 18 1 6.3126 6.5075 1.1185 19 6 7.9306 7.7883 0.5033 20 7 9.1652 7.8362 0.0722 21 14 6.9342 9.3606 0.6601 22 1 7.1235 9.9332 2.0172 23 1 7.3913 10.3398 -0.3585 24 1 5.4961 9.0587 0.4463 25 6 3.8566 3.2292 -1.5466 26 6 2.4434 2.9093 -1.9413 27 8 1.9977 3.4228 -2.9455 28 7 1.6524 2.0906 -1.2467 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9984 0.7636 -0.5874 35 1 3.8289 1.1060 1.1541 36 1 5.7820 4.8582 -0.2598 37 1 7.9333 2.0577 0.1731 38 1 10.2974 2.1926 0.8287 39 1 11.2944 4.3457 1.4737 40 1 9.9458 6.3795 1.4929 41 1 9.5628 8.6882 -0.1662 42 1 4.0385 4.2951 -1.6843 43 1 4.5447 2.6618 -2.1732 44 1 0.7635 1.9151 -1.5930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588986479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:41 Heat of formation + Delta-G solvation = -86.880549 kcal Electronic energy + Delta-G solvation = -26340.010106 eV Core-core repulsion = 22641.208530 eV Total energy + Delta-G solvation = -3698.801576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95114 -40.84915 -39.05706 -38.01968 -35.53919 -35.44909 -34.86414 -33.03730 -31.48209 -30.39454 -29.86130 -27.23635 -26.42741 -24.51388 -23.22743 -22.75548 -22.18570 -20.88064 -20.26002 -19.21960 -18.52361 -18.13038 -17.81801 -17.26404 -16.90975 -16.42311 -16.02559 -15.94804 -15.50475 -15.26681 -14.92768 -14.72456 -14.57334 -14.35487 -14.27965 -14.16258 -13.72209 -13.54454 -13.10700 -12.98310 -12.85754 -12.70130 -12.35258 -12.31428 -12.13230 -12.11628 -11.96662 -11.83509 -11.73815 -11.53722 -11.22030 -11.06224 -10.95243 -10.26812 -10.11005 -9.23689 -8.76107 -8.45470 -6.32294 0.83521 1.07962 1.43391 1.52544 1.53360 1.55465 1.81248 2.23898 2.24756 2.35130 2.82805 3.38956 3.55981 3.60642 3.68849 3.74371 4.03574 4.07647 4.20920 4.31568 4.49829 4.55300 4.55915 4.66216 4.69219 4.74918 4.79553 4.88286 4.99593 5.09700 5.18454 5.19133 5.23818 5.29246 5.32505 5.44813 5.46536 5.81240 5.82998 5.85530 6.13810 6.19515 6.27748 6.27812 6.66699 6.77527 6.98052 7.03742 7.14581 7.37661 8.43622 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.003724 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.487402 B = 7516.587209 C = 8900.147552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.142 3.858 4 H 0.099 0.901 5 C -0.107 4.107 6 C -0.096 4.096 7 H 0.126 0.874 8 C 0.505 3.495 9 O -0.562 6.562 10 N -0.634 5.634 11 C 0.022 3.978 12 C -0.119 4.119 13 C -0.219 4.219 14 C -0.126 4.126 15 C -0.162 4.162 16 C 0.070 3.930 17 C -0.494 4.494 18 H 0.083 0.917 19 C 0.035 3.965 20 N -0.839 5.839 21 Si 0.980 3.020 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.252 1.252 25 C -0.126 4.126 26 C 0.529 3.471 27 O -0.601 6.601 28 N -0.701 5.701 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.412 0.588 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.284 0.716 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.422 -9.679 1.130 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.038 3.962 4 H 0.117 0.883 5 C -0.145 4.145 6 C -0.117 4.117 7 H 0.144 0.856 8 C 0.294 3.706 9 O -0.442 6.442 10 N -0.276 5.276 11 C -0.073 4.073 12 C -0.139 4.139 13 C -0.239 4.239 14 C -0.145 4.145 15 C -0.182 4.182 16 C 0.066 3.934 17 C -0.525 4.525 18 H 0.101 0.899 19 C -0.178 4.178 20 N -0.466 5.466 21 Si 0.802 3.198 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.175 1.175 25 C -0.166 4.166 26 C 0.317 3.683 27 O -0.483 6.483 28 N -0.353 5.353 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.905 -9.922 0.902 17.928 hybrid contribution -0.129 1.198 -0.331 1.250 sum -15.034 -8.724 0.571 17.391 Atomic orbital electron populations 1.21816 0.94559 1.02714 1.02186 1.21893 0.97021 0.94121 1.03941 1.21229 0.94199 0.94871 0.85859 0.88343 1.21764 0.93883 0.93875 1.05013 1.21411 0.91103 1.01686 0.97492 0.85634 1.21042 0.89837 0.82440 0.77325 1.90573 1.70209 1.35532 1.47882 1.43006 1.09505 1.13890 1.61201 1.18032 0.84838 0.95297 1.09147 1.21220 0.93624 0.97772 1.01314 1.20722 0.95353 0.97195 1.10584 1.20743 0.98958 0.93230 1.01581 1.20941 0.95327 0.97185 1.04770 1.17724 0.93401 0.91662 0.90572 1.19510 0.97861 0.91796 1.43319 0.89860 1.26654 0.95878 1.03518 0.91764 1.69864 1.14830 1.28794 1.33104 0.85217 0.79511 0.76514 0.78590 1.19295 1.20116 1.17528 1.21635 0.93805 1.05367 0.95830 1.20024 0.88077 0.77799 0.82407 1.90754 1.75412 1.53772 1.28409 1.45658 1.18082 1.46297 1.25291 0.92900 0.91644 0.91601 0.91592 0.88952 0.90880 0.88352 0.75085 0.85430 0.86703 0.87222 0.87864 0.90559 0.87160 0.87859 0.75810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.76 71.98 0.70 -0.54 16 2 C -0.13 -1.30 5.56 30.59 0.17 -1.13 16 3 C 0.14 1.83 3.07 45.10 0.14 1.97 16 4 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 5 C -0.11 -1.93 3.98 30.67 0.12 -1.81 16 6 C -0.10 -2.11 2.61 -11.40 -0.03 -2.14 16 7 H 0.13 2.31 8.13 -2.39 -0.02 2.29 16 8 C 0.50 16.61 7.01 87.66 0.61 17.23 16 9 O -0.56 -21.86 12.82 -3.04 -0.04 -21.90 16 10 N -0.63 -24.03 5.03 -302.28 -1.52 -25.55 16 11 C 0.02 1.02 6.48 38.88 0.25 1.28 16 12 C -0.12 -5.56 8.78 22.36 0.20 -5.37 16 13 C -0.22 -9.90 10.04 22.42 0.22 -9.68 16 14 C -0.13 -5.92 9.97 22.01 0.22 -5.71 16 15 C -0.16 -8.40 8.57 22.47 0.19 -8.21 16 16 C 0.07 3.59 5.51 -21.18 -0.12 3.48 16 17 C -0.49 -24.34 8.19 23.38 0.19 -24.15 16 18 H 0.08 3.80 7.46 -2.91 -0.02 3.78 16 19 C 0.04 1.68 5.31 85.26 0.45 2.13 16 20 N -0.84 -42.66 10.97 21.83 0.24 -42.42 16 21 Si 0.98 36.43 29.56 68.60 2.03 38.46 16 22 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.28 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 25 C -0.13 -2.89 5.18 29.71 0.15 -2.73 16 26 C 0.53 12.68 7.71 87.71 0.68 13.35 16 27 O -0.60 -19.59 17.78 -3.01 -0.05 -19.64 16 28 N -0.70 -11.80 5.12 -446.67 -2.29 -14.09 16 29 H 0.05 0.43 6.68 -2.38 -0.02 0.42 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.10 1.81 7.89 -2.39 -0.02 1.79 16 36 H 0.41 14.25 7.35 -92.71 -0.68 13.57 16 37 H 0.13 5.83 5.53 -2.91 -0.02 5.82 16 38 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.10 5.59 6.47 -2.91 -0.02 5.57 16 41 H 0.28 13.27 8.30 -92.71 -0.77 12.51 16 42 H 0.11 2.51 7.87 -2.39 -0.02 2.50 16 43 H 0.10 2.46 8.09 -2.39 -0.02 2.44 16 44 H 0.40 6.05 7.04 -92.71 -0.65 5.40 16 Total: -1.00 -66.16 356.09 2.23 -63.92 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.29 Total: 43.25 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.16 Total: -22.04 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -3.57 Total: -82.06 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.09 Total: -41.54 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -66.16 2.23 -63.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588986479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.959 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds