Wall clock time and date at job start Tue Mar 31 2020 10:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00046 * 2 1 4 4 H 1.08994 * 110.67241 * 357.02868 * 3 2 1 5 5 O 1.44427 * 110.64867 * 234.06568 * 3 2 1 6 6 C 1.43739 * 106.99696 * 201.47957 * 5 3 2 7 7 C 1.54101 * 107.29534 * 26.49060 * 6 5 3 8 8 C 1.54816 * 104.18674 * 357.97059 * 7 6 5 9 9 H 1.08994 * 110.90574 * 97.35044 * 8 7 6 10 10 C 1.50702 * 110.90511 * 220.92184 * 8 7 6 11 11 O 1.21280 * 120.00235 * 103.92347 * 10 8 7 12 12 N 1.34778 * 119.99889 * 283.92743 * 10 8 7 13 13 C 1.46504 * 120.00012 * 5.53591 * 12 10 8 14 14 C 1.50702 * 109.47344 * 264.46590 * 13 12 10 15 15 H 1.08000 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99764 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99707 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47296 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47415 * 119.99977 * 18 16 14 21 21 H 1.48500 * 109.47118 * 239.99496 * 18 16 14 22 22 C 1.46503 * 120.00079 * 185.54404 * 12 10 8 23 23 C 1.50698 * 109.46820 * 269.99934 * 22 12 10 24 24 C 1.38224 * 119.62243 * 94.99927 * 23 22 12 25 25 C 1.38625 * 119.16065 * 179.74487 * 24 23 22 26 26 C 1.38667 * 118.42287 * 0.25269 * 25 24 23 27 27 C 1.38182 * 119.16223 * 359.97438 * 26 25 24 28 28 N 1.31855 * 119.61495 * 275.23932 * 23 22 12 29 29 H 1.08002 * 120.00096 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99880 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.88295 * 267.06801 * 6 5 3 33 33 H 1.09002 * 110.00171 * 145.98542 * 6 5 3 34 34 H 1.09001 * 110.49381 * 239.29029 * 7 6 5 35 35 H 1.08998 * 110.59969 * 116.70057 * 7 6 5 36 36 H 1.08999 * 109.46908 * 24.46772 * 13 12 10 37 37 H 1.08997 * 109.46645 * 144.46207 * 13 12 10 38 38 H 0.97006 * 119.99790 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47306 * 149.99527 * 22 12 10 40 40 H 1.09002 * 109.46988 * 29.99368 * 22 12 10 41 41 H 1.08004 * 120.41436 * 0.02562 * 24 23 22 42 42 H 1.08005 * 120.78939 * 180.27323 * 25 24 23 43 43 H 1.08005 * 120.42117 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.61777 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3740 2.1476 -0.0529 5 8 3.0050 1.3496 -1.0943 6 6 4.0012 2.3278 -0.7520 7 6 4.0588 2.4041 0.7860 8 6 2.9646 1.4150 1.2563 9 1 3.3978 0.4477 1.5101 10 6 2.1948 1.9795 2.4224 11 8 1.0794 2.4251 2.2542 12 7 2.7458 1.9891 3.6524 13 6 4.1358 1.5640 3.8357 14 6 4.1682 0.1119 4.2378 15 1 3.2457 -0.4390 4.3464 16 6 5.3755 -0.5128 4.4680 17 7 6.4988 0.1583 4.3362 18 14 5.4157 -2.3128 4.9658 19 1 4.0281 -2.8360 5.0437 20 1 6.1817 -3.0883 3.9573 21 1 6.0694 -2.4450 6.2926 22 6 1.9548 2.4245 4.8061 23 6 2.1193 3.9103 4.9960 24 6 1.1917 4.7761 4.4477 25 6 1.3494 6.1408 4.6328 26 6 2.4422 6.5861 5.3611 27 6 3.3310 5.6613 5.8751 28 7 3.1493 4.3698 5.6791 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.7229 3.2991 -1.1611 33 1 4.9717 2.0246 -1.1447 34 1 3.8318 3.4144 1.1267 35 1 5.0376 2.0910 1.1491 36 1 4.6818 1.6945 2.9014 37 1 4.6004 2.1675 4.6154 38 1 7.3483 -0.2814 4.4978 39 1 2.2986 1.9036 5.6998 40 1 0.9034 2.1945 4.6334 41 1 0.3521 4.3937 3.8862 42 1 0.6380 6.8406 4.2198 43 1 2.5962 7.6424 5.5254 44 1 4.1848 6.0000 6.4432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590630503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:53 Heat of formation + Delta-G solvation = -21.552570 kcal Electronic energy + Delta-G solvation = -27208.148302 eV Core-core repulsion = 23512.179560 eV Total energy + Delta-G solvation = -3695.968742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28876 -39.71799 -38.04255 -35.20022 -33.58164 -32.92108 -32.24529 -32.10497 -31.06609 -28.30443 -27.55739 -26.21709 -23.45554 -23.19583 -22.83631 -21.94346 -21.28647 -19.78188 -18.52127 -16.93931 -16.71602 -16.30517 -16.10070 -15.87864 -15.57261 -15.29514 -15.22595 -14.69364 -14.23510 -14.05208 -13.40702 -13.38820 -13.31118 -13.08640 -12.88501 -12.61334 -12.32197 -12.13476 -11.66096 -11.57735 -11.41242 -11.20621 -11.12409 -10.95966 -10.73424 -10.70656 -10.46240 -10.18311 -9.79041 -9.66709 -9.52806 -9.26857 -9.15690 -9.07706 -8.75010 -8.53022 -7.81113 -6.16896 -4.23641 1.28321 1.49734 2.42829 3.21195 3.22706 3.31698 3.35445 3.67760 4.15236 4.30382 4.37450 4.58721 4.86532 4.95486 5.01686 5.04389 5.16832 5.18659 5.23958 5.29993 5.36424 5.44615 5.48306 5.62189 5.75760 5.78276 5.87394 5.95060 5.99887 6.02312 6.10362 6.20226 6.30043 6.34563 6.38995 6.46806 6.74694 6.81736 6.90583 6.93181 7.16927 7.25115 7.49788 7.77081 8.05910 8.23986 8.33004 8.75653 8.91482 9.43559 10.90109 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.006483 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.918246 B = 4317.631874 C = 6489.789915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.143 4.143 3 C 0.122 3.878 4 H 0.085 0.915 5 O -0.373 6.373 6 C 0.051 3.949 7 C -0.142 4.142 8 C -0.127 4.127 9 H 0.123 0.877 10 C 0.530 3.470 11 O -0.570 6.570 12 N -0.582 5.582 13 C 0.231 3.769 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.168 3.832 23 C 0.120 3.880 24 C -0.151 4.151 25 C -0.084 4.084 26 C -0.182 4.182 27 C 0.094 3.906 28 N -0.463 5.463 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 8.564 -3.428 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.065 3.935 4 H 0.103 0.897 5 O -0.292 6.292 6 C -0.026 4.026 7 C -0.180 4.180 8 C -0.149 4.149 9 H 0.141 0.859 10 C 0.318 3.682 11 O -0.451 6.451 12 N -0.311 5.311 13 C 0.111 3.889 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.044 3.956 23 C -0.019 4.019 24 C -0.171 4.171 25 C -0.111 4.111 26 C -0.202 4.202 27 C -0.063 4.063 28 N -0.172 5.172 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.027 8.037 -3.323 11.181 hybrid contribution -0.150 -0.170 0.323 0.395 sum -7.177 7.867 -3.000 11.064 Atomic orbital electron populations 1.23799 0.95697 1.01857 0.99443 1.22655 0.95674 0.97306 1.00429 1.22046 0.90624 0.96566 0.84294 0.89727 1.88869 1.38554 1.60580 1.41231 1.23113 0.92664 0.92291 0.94508 1.22922 1.00362 0.99441 0.95247 1.22760 0.96132 1.02322 0.93666 0.85906 1.20089 0.85977 0.78039 0.84133 1.90557 1.20587 1.49009 1.84928 1.48161 1.15866 1.62175 1.04948 1.19661 0.74935 0.95361 0.98899 1.21501 0.92897 0.95532 1.47700 0.92068 1.24909 0.95391 0.98312 0.95040 1.69933 0.97586 1.36509 1.48688 0.86499 0.78251 0.84778 0.78301 1.19675 1.20855 1.20871 1.20148 0.96931 0.87439 0.91069 1.21877 0.89806 0.97740 0.92461 1.22129 1.01212 0.93657 1.00099 1.21542 0.97170 0.95755 0.96586 1.22087 0.96604 1.00929 1.00551 1.22766 0.98166 0.88478 0.96932 1.67605 1.19748 1.16183 1.13705 0.88265 0.88282 0.86797 0.92677 0.89633 0.91030 0.88523 0.93843 0.93652 0.92624 0.88379 0.89470 0.84400 0.85336 0.85334 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 14.33 29.01 0.42 -2.02 16 2 C -0.14 -2.28 9.24 -36.02 -0.33 -2.61 16 3 C 0.12 2.08 2.87 -26.83 -0.08 2.01 16 4 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 5 O -0.37 -6.33 11.21 -35.23 -0.39 -6.72 16 6 C 0.05 0.75 7.70 37.73 0.29 1.04 16 7 C -0.14 -2.36 5.58 -25.20 -0.14 -2.50 16 8 C -0.13 -2.35 1.94 -89.76 -0.17 -2.53 16 9 H 0.12 2.49 7.59 -51.93 -0.39 2.10 16 10 C 0.53 10.54 6.86 -10.98 -0.08 10.47 16 11 O -0.57 -11.59 15.06 5.56 0.08 -11.51 16 12 N -0.58 -12.01 2.44 -176.43 -0.43 -12.44 16 13 C 0.23 5.42 4.85 -5.19 -0.03 5.40 16 14 C -0.54 -13.77 9.22 -34.44 -0.32 -14.09 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 18 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.17 3.16 5.69 -5.19 -0.03 3.13 16 23 C 0.12 2.12 6.36 -82.59 -0.53 1.59 16 24 C -0.15 -2.31 9.71 -39.44 -0.38 -2.70 16 25 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 26 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 27 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 28 N -0.46 -8.34 10.27 -9.47 -0.10 -8.43 16 29 H 0.10 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.10 1.40 7.87 -52.49 -0.41 0.99 16 31 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.18 7.85 -51.93 -0.41 0.78 16 35 H 0.10 1.68 6.89 -51.93 -0.36 1.33 16 36 H 0.04 1.04 4.62 -51.93 -0.24 0.80 16 37 H 0.05 1.18 8.11 -51.93 -0.42 0.76 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.10 1.90 8.07 -51.93 -0.42 1.48 16 40 H 0.09 1.53 7.40 -51.93 -0.38 1.14 16 41 H 0.14 2.09 7.80 -52.48 -0.41 1.68 16 42 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 44 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -29.41 370.32 -8.33 -37.73 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.32 Total: 8.03 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.47 Total: -4.11 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.21 Total: -44.46 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.31 Total: -18.23 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.41 -8.33 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590630503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.180 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds