Wall clock time and date at job start Tue Mar 31 2020 10:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00046 * 2 1 4 4 H 1.08994 * 110.67241 * 357.02868 * 3 2 1 5 5 O 1.44427 * 110.64867 * 234.06568 * 3 2 1 6 6 C 1.43739 * 106.99696 * 201.47957 * 5 3 2 7 7 C 1.54101 * 107.29534 * 26.49060 * 6 5 3 8 8 C 1.54816 * 104.18674 * 357.97059 * 7 6 5 9 9 H 1.08994 * 110.90574 * 97.35044 * 8 7 6 10 10 C 1.50702 * 110.90511 * 220.92184 * 8 7 6 11 11 O 1.21280 * 120.00235 * 103.92347 * 10 8 7 12 12 N 1.34778 * 119.99889 * 283.92743 * 10 8 7 13 13 C 1.46504 * 120.00012 * 5.53591 * 12 10 8 14 14 C 1.50702 * 109.47344 * 264.46590 * 13 12 10 15 15 H 1.08000 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99764 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99707 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47296 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47415 * 119.99977 * 18 16 14 21 21 H 1.48500 * 109.47118 * 239.99496 * 18 16 14 22 22 C 1.46503 * 120.00079 * 185.54404 * 12 10 8 23 23 C 1.50698 * 109.46820 * 269.99934 * 22 12 10 24 24 C 1.38224 * 119.62243 * 94.99927 * 23 22 12 25 25 C 1.38625 * 119.16065 * 179.74487 * 24 23 22 26 26 C 1.38667 * 118.42287 * 0.25269 * 25 24 23 27 27 C 1.38182 * 119.16223 * 359.97438 * 26 25 24 28 28 N 1.31855 * 119.61495 * 275.23932 * 23 22 12 29 29 H 1.08002 * 120.00096 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99880 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.88295 * 267.06801 * 6 5 3 33 33 H 1.09002 * 110.00171 * 145.98542 * 6 5 3 34 34 H 1.09001 * 110.49381 * 239.29029 * 7 6 5 35 35 H 1.08998 * 110.59969 * 116.70057 * 7 6 5 36 36 H 1.08999 * 109.46908 * 24.46772 * 13 12 10 37 37 H 1.08997 * 109.46645 * 144.46207 * 13 12 10 38 38 H 0.97006 * 119.99790 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47306 * 149.99527 * 22 12 10 40 40 H 1.09002 * 109.46988 * 29.99368 * 22 12 10 41 41 H 1.08004 * 120.41436 * 0.02562 * 24 23 22 42 42 H 1.08005 * 120.78939 * 180.27323 * 25 24 23 43 43 H 1.08005 * 120.42117 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.61777 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3740 2.1476 -0.0529 5 8 3.0050 1.3496 -1.0943 6 6 4.0012 2.3278 -0.7520 7 6 4.0588 2.4041 0.7860 8 6 2.9646 1.4150 1.2563 9 1 3.3978 0.4477 1.5101 10 6 2.1948 1.9795 2.4224 11 8 1.0794 2.4251 2.2542 12 7 2.7458 1.9891 3.6524 13 6 4.1358 1.5640 3.8357 14 6 4.1682 0.1119 4.2378 15 1 3.2457 -0.4390 4.3464 16 6 5.3755 -0.5128 4.4680 17 7 6.4988 0.1583 4.3362 18 14 5.4157 -2.3128 4.9658 19 1 4.0281 -2.8360 5.0437 20 1 6.1817 -3.0883 3.9573 21 1 6.0694 -2.4450 6.2926 22 6 1.9548 2.4245 4.8061 23 6 2.1193 3.9103 4.9960 24 6 1.1917 4.7761 4.4477 25 6 1.3494 6.1408 4.6328 26 6 2.4422 6.5861 5.3611 27 6 3.3310 5.6613 5.8751 28 7 3.1493 4.3698 5.6791 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.7229 3.2991 -1.1611 33 1 4.9717 2.0246 -1.1447 34 1 3.8318 3.4144 1.1267 35 1 5.0376 2.0910 1.1491 36 1 4.6818 1.6945 2.9014 37 1 4.6004 2.1675 4.6154 38 1 7.3483 -0.2814 4.4978 39 1 2.2986 1.9036 5.6998 40 1 0.9034 2.1945 4.6334 41 1 0.3521 4.3937 3.8862 42 1 0.6380 6.8406 4.2198 43 1 2.5962 7.6424 5.5254 44 1 4.1848 6.0000 6.4432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590630503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:52 Heat of formation + Delta-G solvation = -38.167329 kcal Electronic energy + Delta-G solvation = -27208.868772 eV Core-core repulsion = 23512.179560 eV Total energy + Delta-G solvation = -3696.689212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70738 -40.94716 -39.48541 -36.86747 -34.85624 -34.66425 -33.71012 -33.30385 -32.39247 -29.59161 -29.35936 -27.70592 -25.11938 -24.38701 -24.30737 -23.21212 -22.64796 -21.03706 -20.06452 -18.74504 -18.13955 -17.73998 -17.53841 -17.17119 -16.90850 -16.69252 -16.46624 -16.31026 -15.77990 -15.50892 -14.72453 -14.67276 -14.58222 -14.42128 -14.19786 -14.05064 -13.94947 -13.55592 -13.35759 -13.04107 -12.83027 -12.73385 -12.62366 -12.56445 -12.42388 -12.08340 -11.98715 -11.82712 -11.68211 -10.92127 -10.79729 -10.66934 -10.58608 -10.37816 -10.34905 -9.94248 -9.49819 -8.19551 -6.33242 0.14045 0.40359 1.23256 1.39398 1.42229 1.52355 1.63461 2.18733 2.41885 2.91786 3.03947 3.11201 3.38568 3.51715 3.67424 3.74459 3.83160 4.01304 4.03764 4.07841 4.18766 4.21651 4.26794 4.30584 4.46625 4.52618 4.59948 4.72391 4.77349 4.78363 4.82977 4.88471 4.93772 5.01190 5.05071 5.24214 5.26901 5.29598 5.61946 5.64391 5.72285 5.76836 5.82845 5.90663 6.06228 6.53898 6.79492 7.13403 7.22026 7.38871 8.86641 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.006483 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.918246 B = 4317.631874 C = 6489.789915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.172 4.172 3 C 0.131 3.869 4 H 0.081 0.919 5 O -0.383 6.383 6 C 0.053 3.947 7 C -0.137 4.137 8 C -0.129 4.129 9 H 0.100 0.900 10 C 0.529 3.471 11 O -0.573 6.573 12 N -0.586 5.586 13 C 0.252 3.748 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.023 3.977 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.280 1.280 22 C 0.169 3.831 23 C 0.095 3.905 24 C -0.158 4.158 25 C -0.079 4.079 26 C -0.164 4.164 27 C 0.079 3.921 28 N -0.506 5.506 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.136 0.864 42 H 0.166 0.834 43 H 0.172 0.828 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.246 9.796 -4.061 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.074 3.926 4 H 0.099 0.901 5 O -0.303 6.303 6 C -0.024 4.024 7 C -0.175 4.175 8 C -0.151 4.151 9 H 0.118 0.882 10 C 0.318 3.682 11 O -0.455 6.455 12 N -0.315 5.315 13 C 0.132 3.868 14 C -0.584 4.584 15 H 0.072 0.928 16 C -0.178 4.178 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.206 1.206 22 C 0.045 3.955 23 C -0.043 4.043 24 C -0.179 4.179 25 C -0.105 4.105 26 C -0.183 4.183 27 C -0.079 4.079 28 N -0.216 5.216 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.189 0.811 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.015 9.273 -3.959 12.881 hybrid contribution 0.112 -0.439 0.559 0.719 sum -7.903 8.835 -3.400 12.332 Atomic orbital electron populations 1.24036 0.95104 1.03114 0.96668 1.22721 0.96460 0.96873 1.03002 1.21945 0.90260 0.97098 0.83337 0.90134 1.88856 1.38938 1.61309 1.41185 1.23259 0.93213 0.93116 0.92795 1.22862 0.98939 0.98738 0.96952 1.22722 0.96977 1.01402 0.93971 0.88218 1.20291 0.86008 0.77802 0.84117 1.90536 1.20671 1.49327 1.84947 1.48092 1.14964 1.62515 1.05954 1.19189 0.76406 0.93858 0.97392 1.21692 0.92662 0.96507 1.47522 0.92847 1.25616 0.95064 1.02063 0.95017 1.70025 0.98061 1.38070 1.49559 0.85565 0.78243 0.80245 0.77995 1.19398 1.20223 1.20564 1.20141 0.96677 0.89028 0.89653 1.21600 0.91203 0.96977 0.94543 1.22150 1.00665 0.94891 1.00150 1.21980 0.97812 0.94992 0.95723 1.22513 0.94985 1.02575 0.98244 1.23261 0.99516 0.87754 0.97336 1.67498 1.20575 1.18496 1.14992 0.85818 0.88138 0.86771 0.90411 0.87866 0.91106 0.89900 0.94344 0.96592 0.92425 0.90224 0.88813 0.84644 0.81685 0.81100 0.81024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 14.33 67.78 0.97 -3.14 16 2 C -0.17 -5.43 9.24 25.65 0.24 -5.20 16 3 C 0.13 4.45 2.87 30.53 0.09 4.54 16 4 H 0.08 2.79 7.02 -2.39 -0.02 2.77 16 5 O -0.38 -12.70 11.21 -148.98 -1.67 -14.37 16 6 C 0.05 1.49 7.70 72.35 0.56 2.04 16 7 C -0.14 -4.61 5.58 31.59 0.18 -4.43 16 8 C -0.13 -4.88 1.94 -10.24 -0.02 -4.90 16 9 H 0.10 4.23 7.59 -2.39 -0.02 4.21 16 10 C 0.53 21.55 6.86 87.66 0.60 22.16 16 11 O -0.57 -23.44 15.06 -3.03 -0.05 -23.48 16 12 N -0.59 -25.19 2.44 -830.48 -2.03 -27.22 16 13 C 0.25 12.43 4.85 85.63 0.42 12.85 16 14 C -0.55 -28.91 9.22 25.60 0.24 -28.67 16 15 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.02 1.22 5.46 84.65 0.46 1.68 16 17 N -0.92 -51.37 13.29 21.44 0.28 -51.08 16 18 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C 0.17 6.63 5.69 85.63 0.49 7.12 16 23 C 0.09 3.41 6.36 42.55 0.27 3.68 16 24 C -0.16 -4.75 9.71 22.36 0.22 -4.53 16 25 C -0.08 -1.80 10.18 22.46 0.23 -1.58 16 26 C -0.16 -3.48 10.11 22.36 0.23 -3.26 16 27 C 0.08 2.18 11.18 84.67 0.95 3.13 16 28 N -0.51 -18.58 10.27 -183.89 -1.89 -20.47 16 29 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.10 2.68 7.87 -2.91 -0.02 2.65 16 31 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.07 2.36 7.85 -2.39 -0.02 2.34 16 35 H 0.08 2.99 6.89 -2.39 -0.02 2.98 16 36 H 0.04 1.93 4.62 -2.39 -0.01 1.92 16 37 H 0.02 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 39 H 0.08 3.32 8.07 -2.39 -0.02 3.30 16 40 H 0.09 3.44 7.40 -2.39 -0.02 3.42 16 41 H 0.14 4.04 7.80 -2.91 -0.02 4.02 16 42 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 43 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -64.67 370.32 3.77 -60.91 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.99 Total: 29.68 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.10 Total: 1.49 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.63 Total: -98.77 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -1.72 Total: -37.85 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -64.67 3.77 -60.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590630503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.739 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds