Wall clock time and date at job start Tue Mar 31 2020 11:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47658 * 2 1 4 4 H 1.08999 * 109.47290 * 54.99442 * 3 2 1 5 5 C 1.52999 * 109.47954 * 174.99707 * 3 2 1 6 6 O 1.42905 * 109.46653 * 54.99617 * 5 3 2 7 7 N 1.46505 * 109.46911 * 294.99998 * 3 2 1 8 8 C 1.46502 * 119.99692 * 299.99698 * 7 3 2 9 9 C 1.34776 * 120.00047 * 119.99572 * 7 3 2 10 10 O 1.21660 * 120.00360 * 2.51740 * 9 7 3 11 11 C 1.46892 * 119.99914 * 182.51516 * 9 7 3 12 12 C 1.36131 * 125.43594 * 342.31531 * 11 9 7 13 13 C 1.41704 * 107.74545 * 180.27931 * 12 11 9 14 14 C 1.40016 * 133.34753 * 179.78013 * 13 12 11 15 15 C 1.36577 * 119.83162 * 179.97438 * 14 13 12 16 16 C 1.38863 * 120.59685 * 359.95688 * 15 14 13 17 17 C 1.37846 * 120.63398 * 0.02562 * 16 15 14 18 18 C 1.39081 * 119.81151 * 0.02562 * 17 16 15 19 19 N 1.37839 * 133.16339 * 180.02562 * 18 17 16 20 20 C 1.36893 * 125.61614 * 359.97438 * 19 18 17 21 21 H 1.07997 * 120.00148 * 148.76806 * 20 19 18 22 22 C 1.39009 * 119.99914 * 328.76766 * 20 19 18 23 23 N 1.31345 * 120.00137 * 333.10755 * 22 20 19 24 24 Si 1.86801 * 119.99755 * 153.11216 * 22 20 19 25 25 H 1.48506 * 109.47204 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47234 * 299.99254 * 24 22 20 27 27 H 1.48494 * 109.47503 * 60.00083 * 24 22 20 28 28 H 1.09004 * 109.47231 * 300.00811 * 1 2 3 29 29 H 1.09009 * 109.46837 * 59.99995 * 1 2 3 30 30 H 1.09000 * 109.47550 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47547 * 239.99633 * 2 1 3 32 32 H 1.09006 * 109.47205 * 119.99658 * 2 1 3 33 33 H 1.08992 * 109.47677 * 174.99363 * 5 3 2 34 34 H 1.08999 * 109.47297 * 295.00349 * 5 3 2 35 35 H 0.96703 * 113.99692 * 180.02562 * 6 5 3 36 36 H 1.08995 * 109.47090 * 265.65234 * 8 7 3 37 37 H 1.08992 * 109.47192 * 25.65683 * 8 7 3 38 38 H 1.08998 * 109.46894 * 145.65531 * 8 7 3 39 39 H 1.07991 * 126.12714 * 0.02562 * 12 11 9 40 40 H 1.07997 * 120.08643 * 359.97438 * 14 13 12 41 41 H 1.07992 * 119.70561 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.67948 * 180.02562 * 16 15 14 43 43 H 1.07994 * 120.09314 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00105 * 354.82366 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5649 1.4443 0.1258 6 8 4.1293 0.6403 -0.9120 7 7 1.6525 2.0974 -1.2519 8 6 2.1140 1.5588 -2.5337 9 6 0.8714 3.1954 -1.2242 10 8 0.5259 3.6695 -0.1584 11 6 0.4374 3.8198 -2.4810 12 6 1.0056 3.6158 -3.7011 13 6 0.2997 4.4041 -4.6436 14 6 0.4319 4.6002 -6.0236 15 6 -0.4215 5.4447 -6.6746 16 6 -1.4222 6.1118 -5.9804 17 6 -1.5724 5.9346 -4.6216 18 6 -0.7146 5.0805 -3.9368 19 7 -0.6148 4.7059 -2.6140 20 6 -1.4223 5.1429 -1.5986 21 1 -1.6347 4.4954 -0.7608 22 6 -1.9688 6.4202 -1.6459 23 7 -1.3550 7.3730 -2.3097 24 14 -3.5762 6.7815 -0.7654 25 1 -3.9419 8.2066 -0.9676 26 1 -4.6477 5.9124 -1.3146 27 1 -3.4165 6.5133 0.6863 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.9356 2.4654 0.0366 34 1 3.8499 1.0377 1.0961 35 1 5.0952 0.5955 -0.8936 36 1 3.0250 2.0743 -2.8376 37 1 2.3175 0.4932 -2.4280 38 1 1.3428 1.7082 -3.2893 39 1 1.8466 2.9720 -3.9122 40 1 1.2067 4.0851 -6.5719 41 1 -0.3175 5.5948 -7.7390 42 1 -2.0891 6.7758 -6.5101 43 1 -2.3533 6.4581 -4.0903 44 1 -0.4843 7.2064 -2.7035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590767493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:53 Heat of formation + Delta-G solvation = -8.312097 kcal Electronic energy + Delta-G solvation = -27513.326333 eV Core-core repulsion = 23817.931741 eV Total energy + Delta-G solvation = -3695.394592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73612 -39.28890 -37.20652 -35.91308 -35.17701 -34.07810 -32.72493 -30.47817 -29.23955 -29.05578 -27.63590 -26.55227 -24.57315 -23.71569 -22.92568 -21.16003 -20.32802 -19.95875 -18.95163 -18.10530 -17.43950 -16.14442 -15.93605 -15.60351 -15.52743 -15.09586 -14.45378 -14.29409 -14.09840 -13.81226 -13.53676 -13.31132 -13.15650 -13.01005 -12.76711 -12.42342 -12.33031 -12.20813 -12.11769 -11.90622 -11.21067 -11.14615 -11.05815 -10.87139 -10.85435 -10.68104 -10.52730 -10.37830 -10.21156 -10.04327 -9.79432 -9.10209 -8.99815 -8.72157 -8.23166 -7.47148 -6.98387 -6.73797 -4.34500 1.78345 2.68754 3.05820 3.16356 3.20905 3.27069 3.38298 3.96862 4.14185 4.24870 4.53329 4.72906 4.82818 4.98753 5.05579 5.20199 5.28300 5.43166 5.44933 5.57891 5.72339 5.77026 5.87164 5.89600 5.91805 6.02361 6.05488 6.07213 6.22092 6.27688 6.30217 6.45587 6.49745 6.62940 6.79445 6.92930 7.00109 7.06261 7.36024 7.48811 7.49898 7.56545 7.75544 7.81004 7.89423 8.01618 8.25152 8.78043 8.92385 9.17019 10.11924 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.005266 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.663816 B = 5315.473678 C = 6851.609933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.144 3.856 4 H 0.110 0.890 5 C 0.068 3.932 6 O -0.565 6.565 7 N -0.602 5.602 8 C 0.075 3.925 9 C 0.587 3.413 10 O -0.537 6.537 11 C -0.034 4.034 12 C -0.224 4.224 13 C -0.122 4.122 14 C -0.089 4.089 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.071 4.071 18 C 0.037 3.963 19 N -0.229 5.229 20 C -0.404 4.404 21 H 0.113 0.887 22 C 0.022 3.978 23 N -0.815 5.815 24 Si 1.077 2.923 25 H -0.272 1.272 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.374 0.626 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -10.900 0.563 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.040 3.960 4 H 0.127 0.873 5 C -0.011 4.011 6 O -0.370 6.370 7 N -0.336 5.336 8 C -0.068 4.068 9 C 0.379 3.621 10 O -0.414 6.414 11 C -0.151 4.151 12 C -0.250 4.250 13 C -0.127 4.127 14 C -0.108 4.108 15 C -0.175 4.175 16 C -0.169 4.169 17 C -0.091 4.091 18 C -0.077 4.077 19 N 0.112 4.888 20 C -0.533 4.533 21 H 0.130 0.870 22 C -0.194 4.194 23 N -0.441 5.441 24 Si 0.900 3.100 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.220 0.780 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.707 -9.388 1.561 10.617 hybrid contribution 2.027 -1.009 -0.093 2.267 sum 6.734 -10.397 1.468 12.474 Atomic orbital electron populations 1.21733 0.95481 1.01021 1.02564 1.21754 0.96271 0.95712 1.02577 1.21152 0.91958 0.94058 0.88791 0.87255 1.22586 0.94172 0.94347 0.89984 1.86537 1.24902 1.72229 1.53313 1.47406 1.51531 1.27935 1.06752 1.22398 0.99818 0.99134 0.85411 1.17303 0.77604 0.79304 0.87929 1.90756 1.56509 1.62456 1.31653 1.19488 0.95518 1.06126 0.93964 1.21061 1.05073 1.07789 0.91074 1.17959 0.99483 1.01867 0.93387 1.20047 0.99127 0.99354 0.92305 1.20309 0.98032 1.00679 0.98438 1.20554 1.00256 1.02534 0.93580 1.20425 0.98675 0.96631 0.93349 1.18264 1.01748 1.04355 0.83382 1.40130 1.17478 1.26505 1.04730 1.20924 1.26413 1.02760 1.03218 0.86983 1.26867 1.04344 0.90396 0.97766 1.70623 1.14564 1.32914 1.26035 0.83406 0.73146 0.77159 0.76288 1.19632 1.20090 1.20070 0.92784 0.92427 0.93030 0.90751 0.91514 0.93273 0.92956 0.78004 0.92987 0.91195 0.89150 0.83641 0.87790 0.87859 0.87458 0.85845 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.80 37.15 0.36 -1.69 16 2 C -0.12 -1.54 5.07 -26.74 -0.14 -1.68 16 3 C 0.14 2.07 2.55 -67.93 -0.17 1.90 16 4 H 0.11 1.77 6.90 -51.93 -0.36 1.41 16 5 C 0.07 0.77 6.79 37.16 0.25 1.02 16 6 O -0.56 -5.68 10.57 -35.23 -0.37 -6.05 16 7 N -0.60 -10.33 2.21 -175.40 -0.39 -10.72 16 8 C 0.07 1.10 7.10 59.85 0.42 1.52 16 9 C 0.59 13.15 7.58 -12.76 -0.10 13.06 16 10 O -0.54 -13.64 14.55 5.22 0.08 -13.57 16 11 C -0.03 -0.81 6.55 -82.25 -0.54 -1.35 16 12 C -0.22 -4.84 8.57 -39.02 -0.33 -5.18 16 13 C -0.12 -2.83 6.16 -106.89 -0.66 -3.49 16 14 C -0.09 -1.80 10.06 -39.52 -0.40 -2.19 16 15 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 16 C -0.15 -3.10 10.02 -39.49 -0.40 -3.50 16 17 C -0.07 -1.73 8.32 -39.41 -0.33 -2.06 16 18 C 0.04 0.94 5.57 -83.84 -0.47 0.47 16 19 N -0.23 -6.15 2.71 -56.08 -0.15 -6.30 16 20 C -0.40 -11.18 8.82 -15.01 -0.13 -11.31 16 21 H 0.11 3.18 7.09 -52.49 -0.37 2.81 16 22 C 0.02 0.57 4.13 -17.47 -0.07 0.50 16 23 N -0.82 -22.44 11.43 55.50 0.63 -21.81 16 24 Si 1.08 22.82 30.00 -169.99 -5.10 17.72 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.93 7.75 -51.92 -0.40 0.53 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.92 6.08 -51.93 -0.32 0.60 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.37 2.16 9.12 45.56 0.42 2.57 16 36 H 0.05 0.74 7.51 -51.93 -0.39 0.35 16 37 H 0.07 0.91 5.54 -51.93 -0.29 0.62 16 38 H 0.09 1.44 4.90 -51.93 -0.25 1.19 16 39 H 0.15 2.61 4.62 -52.49 -0.24 2.37 16 40 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.12 3.13 6.04 -52.49 -0.32 2.81 16 44 H 0.29 8.44 7.00 -40.82 -0.29 8.16 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -31.84 347.29 -8.14 -39.98 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.99 Total: 12.87 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.09 Total: -17.37 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.09 Total: -38.82 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.30 Total: -19.62 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.10 Total: 17.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.84 -8.14 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590767493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.672 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds