Wall clock time and date at job start Tue Mar 31 2020 11:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47658 * 2 1 4 4 H 1.08999 * 109.47290 * 54.99442 * 3 2 1 5 5 C 1.52999 * 109.47954 * 174.99707 * 3 2 1 6 6 O 1.42905 * 109.46653 * 54.99617 * 5 3 2 7 7 N 1.46505 * 109.46911 * 294.99998 * 3 2 1 8 8 C 1.46502 * 119.99692 * 299.99698 * 7 3 2 9 9 C 1.34776 * 120.00047 * 119.99572 * 7 3 2 10 10 O 1.21660 * 120.00360 * 2.51740 * 9 7 3 11 11 C 1.46892 * 119.99914 * 182.51516 * 9 7 3 12 12 C 1.36131 * 125.43594 * 342.31531 * 11 9 7 13 13 C 1.41704 * 107.74545 * 180.27931 * 12 11 9 14 14 C 1.40016 * 133.34753 * 179.78013 * 13 12 11 15 15 C 1.36577 * 119.83162 * 179.97438 * 14 13 12 16 16 C 1.38863 * 120.59685 * 359.95688 * 15 14 13 17 17 C 1.37846 * 120.63398 * 0.02562 * 16 15 14 18 18 C 1.39081 * 119.81151 * 0.02562 * 17 16 15 19 19 N 1.37839 * 133.16339 * 180.02562 * 18 17 16 20 20 C 1.36893 * 125.61614 * 359.97438 * 19 18 17 21 21 H 1.07997 * 120.00148 * 148.76806 * 20 19 18 22 22 C 1.39009 * 119.99914 * 328.76766 * 20 19 18 23 23 N 1.31345 * 120.00137 * 333.10755 * 22 20 19 24 24 Si 1.86801 * 119.99755 * 153.11216 * 22 20 19 25 25 H 1.48506 * 109.47204 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47234 * 299.99254 * 24 22 20 27 27 H 1.48494 * 109.47503 * 60.00083 * 24 22 20 28 28 H 1.09004 * 109.47231 * 300.00811 * 1 2 3 29 29 H 1.09009 * 109.46837 * 59.99995 * 1 2 3 30 30 H 1.09000 * 109.47550 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47547 * 239.99633 * 2 1 3 32 32 H 1.09006 * 109.47205 * 119.99658 * 2 1 3 33 33 H 1.08992 * 109.47677 * 174.99363 * 5 3 2 34 34 H 1.08999 * 109.47297 * 295.00349 * 5 3 2 35 35 H 0.96703 * 113.99692 * 180.02562 * 6 5 3 36 36 H 1.08995 * 109.47090 * 265.65234 * 8 7 3 37 37 H 1.08992 * 109.47192 * 25.65683 * 8 7 3 38 38 H 1.08998 * 109.46894 * 145.65531 * 8 7 3 39 39 H 1.07991 * 126.12714 * 0.02562 * 12 11 9 40 40 H 1.07997 * 120.08643 * 359.97438 * 14 13 12 41 41 H 1.07992 * 119.70561 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.67948 * 180.02562 * 16 15 14 43 43 H 1.07994 * 120.09314 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00105 * 354.82366 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5649 1.4443 0.1258 6 8 4.1293 0.6403 -0.9120 7 7 1.6525 2.0974 -1.2519 8 6 2.1140 1.5588 -2.5337 9 6 0.8714 3.1954 -1.2242 10 8 0.5259 3.6695 -0.1584 11 6 0.4374 3.8198 -2.4810 12 6 1.0056 3.6158 -3.7011 13 6 0.2997 4.4041 -4.6436 14 6 0.4319 4.6002 -6.0236 15 6 -0.4215 5.4447 -6.6746 16 6 -1.4222 6.1118 -5.9804 17 6 -1.5724 5.9346 -4.6216 18 6 -0.7146 5.0805 -3.9368 19 7 -0.6148 4.7059 -2.6140 20 6 -1.4223 5.1429 -1.5986 21 1 -1.6347 4.4954 -0.7608 22 6 -1.9688 6.4202 -1.6459 23 7 -1.3550 7.3730 -2.3097 24 14 -3.5762 6.7815 -0.7654 25 1 -3.9419 8.2066 -0.9676 26 1 -4.6477 5.9124 -1.3146 27 1 -3.4165 6.5133 0.6863 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.9356 2.4654 0.0366 34 1 3.8499 1.0377 1.0961 35 1 5.0952 0.5955 -0.8936 36 1 3.0250 2.0743 -2.8376 37 1 2.3175 0.4932 -2.4280 38 1 1.3428 1.7082 -3.2893 39 1 1.8466 2.9720 -3.9122 40 1 1.2067 4.0851 -6.5719 41 1 -0.3175 5.5948 -7.7390 42 1 -2.0891 6.7758 -6.5101 43 1 -2.3533 6.4581 -4.0903 44 1 -0.4843 7.2064 -2.7035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590767493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:52 Heat of formation + Delta-G solvation = -28.883494 kcal Electronic energy + Delta-G solvation = -27514.218376 eV Core-core repulsion = 23817.931741 eV Total energy + Delta-G solvation = -3696.286635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48296 -40.77699 -38.47640 -37.55970 -36.48414 -35.78938 -34.08066 -32.24708 -30.79151 -30.49290 -29.16892 -27.93869 -26.47379 -25.00688 -24.26535 -22.84348 -21.90245 -21.58780 -20.41874 -19.80745 -18.50241 -17.60075 -17.49315 -17.42483 -16.93000 -16.54658 -15.96392 -15.74003 -15.49367 -15.29776 -14.99238 -14.90970 -14.70776 -14.57108 -14.23693 -13.84021 -13.80939 -13.74237 -13.40579 -13.31438 -12.91399 -12.52559 -12.49149 -12.26837 -12.23843 -12.08564 -11.98187 -11.93908 -11.77256 -11.46920 -10.98953 -10.86251 -10.72338 -10.52760 -9.65135 -9.41859 -8.83005 -8.52571 -6.38594 0.05692 0.98408 1.32663 1.39648 1.49944 1.69504 1.80594 2.23275 2.37672 2.76040 2.98202 3.23519 3.40489 3.59724 3.86248 4.01638 4.15032 4.18151 4.31496 4.35433 4.44045 4.44571 4.48656 4.63451 4.65559 4.68990 4.70523 4.75674 4.90812 4.96705 4.98408 5.06286 5.08090 5.15247 5.20687 5.32982 5.35351 5.43616 5.67560 5.71755 5.78055 5.86957 6.10135 6.14466 6.38411 6.46590 6.92364 6.94374 7.18221 7.29595 8.06766 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.005266 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.663816 B = 5315.473678 C = 6851.609933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.131 3.869 4 H 0.082 0.918 5 C 0.081 3.919 6 O -0.571 6.571 7 N -0.586 5.586 8 C 0.074 3.926 9 C 0.578 3.422 10 O -0.583 6.583 11 C -0.061 4.061 12 C -0.196 4.196 13 C -0.148 4.148 14 C -0.079 4.079 15 C -0.154 4.154 16 C -0.129 4.129 17 C -0.117 4.117 18 C 0.019 3.981 19 N -0.268 5.268 20 C -0.436 4.436 21 H 0.085 0.915 22 C -0.012 4.012 23 N -0.836 5.836 24 Si 1.122 2.878 25 H -0.263 1.263 26 H -0.262 1.262 27 H -0.268 1.268 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.396 0.604 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.188 0.812 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.135 0.865 43 H 0.099 0.901 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 -13.176 -1.742 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.029 3.971 4 H 0.100 0.900 5 C 0.002 3.998 6 O -0.379 6.379 7 N -0.318 5.318 8 C -0.068 4.068 9 C 0.369 3.631 10 O -0.465 6.465 11 C -0.177 4.177 12 C -0.222 4.222 13 C -0.153 4.153 14 C -0.098 4.098 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.137 4.137 18 C -0.095 4.095 19 N 0.070 4.930 20 C -0.564 4.564 21 H 0.103 0.897 22 C -0.221 4.221 23 N -0.463 5.463 24 Si 0.939 3.061 25 H -0.187 1.187 26 H -0.187 1.187 27 H -0.193 1.193 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.205 0.795 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.153 0.847 43 H 0.117 0.883 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.840 -11.724 -0.751 13.594 hybrid contribution 1.574 -0.500 0.410 1.702 sum 8.414 -12.223 -0.341 14.843 Atomic orbital electron populations 1.21722 0.96959 1.01775 1.00214 1.21711 0.94778 0.94224 1.04379 1.21455 0.94570 0.94641 0.86475 0.89963 1.22318 0.91439 0.94196 0.91848 1.86452 1.27084 1.71567 1.52790 1.47472 1.49368 1.25983 1.08992 1.22497 0.99671 1.00769 0.83820 1.17409 0.78306 0.80534 0.86866 1.90716 1.58590 1.64327 1.32819 1.20202 0.95908 1.05728 0.95816 1.21609 1.04725 1.06365 0.89525 1.18490 0.99250 1.02317 0.95197 1.20553 0.99689 0.98686 0.90838 1.20816 0.96542 0.99296 1.00641 1.21028 1.00273 1.01395 0.92195 1.20462 0.99668 0.98571 0.95000 1.18837 1.02616 1.04540 0.83505 1.40275 1.19073 1.28579 1.05034 1.20737 1.28783 1.03055 1.03793 0.89713 1.28188 1.06446 0.89808 0.97667 1.70745 1.13983 1.33017 1.28562 0.82898 0.70051 0.77524 0.75653 1.18705 1.18702 1.19298 0.94289 0.95702 0.90620 0.89764 0.88598 0.94769 0.89908 0.75382 0.91467 0.88557 0.90322 0.79550 0.83455 0.83114 0.84678 0.88282 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.80 71.98 0.71 -3.35 16 2 C -0.11 -2.55 5.07 30.59 0.16 -2.39 16 3 C 0.13 3.68 2.55 44.99 0.11 3.80 16 4 H 0.08 2.78 6.90 -2.39 -0.02 2.77 16 5 C 0.08 1.63 6.79 71.98 0.49 2.12 16 6 O -0.57 -9.17 10.57 -148.98 -1.58 -10.74 16 7 N -0.59 -20.06 2.21 -827.09 -1.83 -21.89 16 8 C 0.07 1.99 7.10 127.77 0.91 2.90 16 9 C 0.58 27.24 7.58 86.51 0.66 27.90 16 10 O -0.58 -32.10 14.55 -4.22 -0.06 -32.16 16 11 C -0.06 -3.08 6.55 39.91 0.26 -2.81 16 12 C -0.20 -8.35 8.57 22.64 0.19 -8.16 16 13 C -0.15 -6.71 6.16 -21.34 -0.13 -6.84 16 14 C -0.08 -2.88 10.06 22.31 0.22 -2.66 16 15 C -0.15 -5.32 9.97 22.03 0.22 -5.10 16 16 C -0.13 -5.17 10.02 22.33 0.22 -4.95 16 17 C -0.12 -5.86 8.32 22.38 0.19 -5.67 16 18 C 0.02 1.01 5.57 39.06 0.22 1.23 16 19 N -0.27 -15.32 2.71 -331.34 -0.90 -16.22 16 20 C -0.44 -26.21 8.82 84.09 0.74 -25.47 16 21 H 0.09 5.35 7.09 -2.91 -0.02 5.33 16 22 C -0.01 -0.70 4.13 84.95 0.35 -0.35 16 23 N -0.84 -49.26 11.43 21.67 0.25 -49.02 16 24 Si 1.12 49.03 30.00 68.60 2.06 51.08 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.02 0.81 7.75 -2.38 -0.02 0.79 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.77 6.08 -2.39 -0.01 1.76 16 32 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.40 2.82 9.12 -74.06 -0.68 2.15 16 36 H 0.07 1.66 7.51 -2.39 -0.02 1.64 16 37 H 0.10 2.15 5.54 -2.39 -0.01 2.13 16 38 H 0.08 2.34 4.90 -2.39 -0.01 2.33 16 39 H 0.19 6.15 4.62 -2.91 -0.01 6.14 16 40 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 42 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.10 5.36 6.04 -2.91 -0.02 5.35 16 44 H 0.27 16.75 7.00 -92.71 -0.65 16.10 16 Total: -1.00 -78.19 347.29 3.94 -74.25 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.48 Total: 34.51 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 5.52 Total: -29.82 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.48 Total: -87.12 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.64 Total: -42.90 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.06 Total: 51.08 kcal Total: -78.19 3.94 -74.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590767493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.370 kcal (2) G-P(sol) polarization free energy of solvation -78.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds