Wall clock time and date at job start Tue Mar 31 2020 11:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47335 * 2 1 4 4 H 1.08999 * 109.47179 * 54.90831 * 3 2 1 5 5 N 1.46500 * 109.46907 * 294.89987 * 3 2 1 6 6 C 1.34779 * 119.99331 * 98.26617 * 5 3 2 7 7 O 1.21668 * 120.00317 * 5.10230 * 6 5 3 8 8 C 1.46891 * 119.99774 * 185.09775 * 6 5 3 9 9 C 1.36124 * 125.43664 * 186.31420 * 8 6 5 10 10 C 1.41700 * 107.74365 * 180.28057 * 9 8 6 11 11 C 1.40024 * 133.35066 * 179.77940 * 10 9 8 12 12 C 1.36570 * 119.83433 * 179.97438 * 11 10 9 13 13 C 1.38856 * 120.60222 * 359.95648 * 12 11 10 14 14 C 1.37848 * 120.63073 * 0.02608 * 13 12 11 15 15 C 1.39092 * 119.81381 * 359.97438 * 14 13 12 16 16 N 1.37832 * 133.16573 * 180.02562 * 15 14 13 17 17 C 1.36893 * 125.61698 * 359.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 224.53582 * 17 16 15 19 19 C 1.39014 * 120.00233 * 44.53751 * 17 16 15 20 20 N 1.31351 * 119.99953 * 196.85181 * 19 17 16 21 21 Si 1.86803 * 119.99794 * 16.84343 * 19 17 16 22 22 H 1.48493 * 109.47314 * 264.72027 * 21 19 17 23 23 H 1.48497 * 109.47068 * 24.72135 * 21 19 17 24 24 H 1.48502 * 109.46707 * 144.71912 * 21 19 17 25 25 C 1.53006 * 109.46986 * 174.90220 * 3 2 1 26 26 H 1.08993 * 109.47358 * 299.25390 * 25 3 2 27 27 C 1.52994 * 109.46887 * 179.25171 * 25 3 2 28 28 O 1.42908 * 109.46981 * 59.25545 * 25 3 2 29 29 H 1.09003 * 109.46638 * 60.00047 * 1 2 3 30 30 H 1.08994 * 109.47421 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47021 * 300.00658 * 1 2 3 32 32 H 1.09000 * 109.47298 * 239.99729 * 2 1 3 33 33 H 1.09006 * 109.47101 * 120.00146 * 2 1 3 34 34 H 0.96992 * 120.00345 * 278.26835 * 5 3 2 35 35 H 1.07994 * 126.12629 * 0.02562 * 9 8 6 36 36 H 1.08006 * 120.08280 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.69981 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.68455 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.09248 * 179.97438 * 14 13 12 40 40 H 0.96999 * 119.99426 * 174.98902 * 20 19 17 41 41 H 1.08998 * 109.47113 * 60.00470 * 27 25 3 42 42 H 1.09001 * 109.47093 * 180.02562 * 27 25 3 43 43 H 1.09002 * 109.47240 * 300.00114 * 27 25 3 44 44 H 0.96697 * 113.99799 * 65.70865 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6042 1.9820 0.8409 5 7 1.6546 2.0967 -1.2528 6 6 0.5644 2.8883 -1.2919 7 8 -0.0459 3.1342 -0.2685 8 6 0.1131 3.4541 -2.5701 9 6 -0.8931 4.3584 -2.7216 10 6 -1.0157 4.6404 -4.1048 11 6 -1.8634 5.4741 -4.8444 12 6 -1.7382 5.5374 -6.2029 13 6 -0.7759 4.7822 -6.8601 14 6 0.0704 3.9545 -6.1537 15 6 -0.0380 3.8733 -4.7694 16 7 0.6450 3.1565 -3.8106 17 6 1.6759 2.2878 -4.0484 18 1 1.7002 1.3295 -3.5509 19 6 2.6916 2.6391 -4.9301 20 7 3.4889 1.7149 -5.4154 21 14 2.9224 4.4255 -5.4250 22 1 2.2144 4.6800 -6.7052 23 1 2.3662 5.3078 -4.3679 24 1 4.3702 4.7089 -5.5951 25 6 3.5647 1.4443 0.1282 26 1 3.8510 0.9694 1.0665 27 6 4.0763 2.8861 0.1094 28 8 4.1355 0.7221 -0.9649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1838 1.9603 -2.0541 35 1 -1.4933 4.7815 -1.9298 36 1 -2.6144 6.0656 -4.3418 37 1 -2.3935 6.1808 -6.7712 38 1 -0.6896 4.8440 -7.9348 39 1 0.8154 3.3708 -6.6737 40 1 4.1503 1.9481 -6.0855 41 1 3.6410 3.4369 0.9432 42 1 5.1625 2.8874 0.2003 43 1 3.7900 3.3611 -0.8290 44 1 3.9952 1.1375 -1.8268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590873434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:29 Heat of formation + Delta-G solvation = -33.165400 kcal Electronic energy + Delta-G solvation = -27819.722218 eV Core-core repulsion = 24123.249905 eV Total energy + Delta-G solvation = -3696.472312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92170 -39.37391 -37.44333 -36.24507 -34.51968 -33.69307 -31.95368 -31.44304 -30.64457 -29.29384 -28.36319 -26.33070 -25.02443 -23.37987 -21.85670 -21.24654 -20.86881 -20.00453 -19.45554 -18.52321 -16.99289 -16.62097 -15.93210 -15.55134 -15.32306 -14.86346 -14.61657 -14.37733 -14.16335 -14.01877 -13.86797 -13.38844 -13.21818 -13.11525 -12.83159 -12.61899 -12.38900 -12.20333 -12.09250 -11.77188 -11.51507 -11.43258 -11.12711 -11.06883 -11.03400 -10.80445 -10.59998 -10.50032 -10.36010 -9.98810 -9.85817 -9.60223 -9.48354 -8.80181 -8.51483 -7.45924 -7.09655 -6.99794 -4.82949 1.52322 2.40038 2.76650 2.92035 3.04907 3.11582 3.67433 3.75714 3.99324 4.06933 4.47127 4.51032 4.68052 4.84645 5.10775 5.29024 5.42309 5.44212 5.49090 5.55006 5.63553 5.69086 5.81698 5.90213 5.92868 6.06828 6.11221 6.12602 6.15980 6.20380 6.30123 6.34376 6.46269 6.53797 6.62644 6.68550 6.76023 6.98620 7.05469 7.16432 7.26852 7.44232 7.55895 7.61782 7.81675 7.97541 8.12652 8.48443 8.82926 8.91448 9.93661 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.005933 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.229676 B = 4718.362238 C = 5834.059744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.106 3.894 4 H 0.098 0.902 5 N -0.719 5.719 6 C 0.599 3.401 7 O -0.553 6.553 8 C -0.013 4.013 9 C -0.159 4.159 10 C -0.126 4.126 11 C -0.075 4.075 12 C -0.160 4.160 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.065 3.935 16 N -0.276 5.276 17 C -0.378 4.378 18 H 0.124 0.876 19 C 0.087 3.913 20 N -0.820 5.820 21 Si 0.871 3.129 22 H -0.245 1.245 23 H -0.253 1.253 24 H -0.281 1.281 25 C 0.097 3.903 26 H 0.104 0.896 27 C -0.187 4.187 28 O -0.561 6.561 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.290 0.710 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 1.535 3.917 4.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.001 3.999 4 H 0.116 0.884 5 N -0.380 5.380 6 C 0.387 3.613 7 O -0.432 6.432 8 C -0.127 4.127 9 C -0.186 4.186 10 C -0.131 4.131 11 C -0.094 4.094 12 C -0.179 4.179 13 C -0.148 4.148 14 C -0.126 4.126 15 C -0.049 4.049 16 N 0.059 4.941 17 C -0.505 4.505 18 H 0.141 0.859 19 C -0.129 4.129 20 N -0.448 5.448 21 Si 0.695 3.305 22 H -0.170 1.170 23 H -0.177 1.177 24 H -0.207 1.207 25 C 0.037 3.963 26 H 0.122 0.878 27 C -0.244 4.244 28 O -0.367 6.367 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.352 0.912 5.019 5.113 hybrid contribution 0.332 1.024 -1.246 1.647 sum -0.021 1.936 3.773 4.240 Atomic orbital electron populations 1.21708 0.95550 1.00694 1.02389 1.21795 0.96249 0.95911 1.02550 1.21755 0.94992 0.93932 0.89261 0.88365 1.46624 1.29133 1.48441 1.13768 1.17144 0.79859 0.77369 0.86880 1.90721 1.56894 1.61591 1.33976 1.20251 1.02971 1.04338 0.85151 1.20476 1.01527 1.01942 0.94634 1.18021 0.99530 1.02275 0.93296 1.20186 0.97934 0.97858 0.93434 1.20365 1.00707 1.02599 0.94248 1.20601 0.96995 0.98540 0.98652 1.20197 1.00634 1.00788 0.90957 1.18433 0.95639 0.99967 0.90816 1.40246 1.22735 1.28888 1.02224 1.19221 1.00439 0.98861 1.31938 0.85868 1.25487 0.93820 0.99378 0.94192 1.69629 1.18260 1.33935 1.22956 0.86911 0.78041 0.83350 0.82208 1.16952 1.17691 1.20749 1.22208 0.90743 0.92202 0.91129 0.87773 1.22493 1.01539 0.96990 1.03421 1.86521 1.79398 1.52748 1.18057 0.92689 0.93359 0.92711 0.91011 0.91575 0.73861 0.84425 0.87077 0.87210 0.86935 0.86352 0.89923 0.91623 0.91926 0.91653 0.76952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.30 37.16 0.35 -1.91 16 2 C -0.13 -1.84 5.38 -26.73 -0.14 -1.98 16 3 C 0.11 1.62 2.10 -67.92 -0.14 1.48 16 4 H 0.10 1.56 7.14 -51.93 -0.37 1.19 16 5 N -0.72 -12.97 3.71 -55.04 -0.20 -13.17 16 6 C 0.60 12.40 6.39 -12.76 -0.08 12.32 16 7 O -0.55 -12.05 16.00 5.22 0.08 -11.97 16 8 C -0.01 -0.28 6.77 -82.25 -0.56 -0.84 16 9 C -0.16 -3.39 10.55 -39.02 -0.41 -3.80 16 10 C -0.13 -2.69 6.16 -106.89 -0.66 -3.35 16 11 C -0.08 -1.37 10.06 -39.51 -0.40 -1.77 16 12 C -0.16 -2.73 9.97 -39.95 -0.40 -3.12 16 13 C -0.13 -2.32 10.02 -39.50 -0.40 -2.72 16 14 C -0.11 -2.24 6.81 -39.41 -0.27 -2.51 16 15 C 0.07 1.48 5.14 -83.84 -0.43 1.05 16 16 N -0.28 -6.34 2.39 -56.08 -0.13 -6.48 16 17 C -0.38 -8.74 8.03 -15.00 -0.12 -8.87 16 18 H 0.12 2.91 6.74 -52.49 -0.35 2.56 16 19 C 0.09 2.01 4.99 -17.47 -0.09 1.92 16 20 N -0.82 -19.22 13.95 55.50 0.77 -18.45 16 21 Si 0.87 18.89 24.21 -169.99 -4.11 14.78 16 22 H -0.25 -5.14 5.66 56.52 0.32 -4.82 16 23 H -0.25 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 C 0.10 1.32 3.44 -26.73 -0.09 1.23 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 27 C -0.19 -2.51 9.32 37.15 0.35 -2.16 16 28 O -0.56 -8.70 12.72 -35.23 -0.45 -9.14 16 29 H 0.05 0.99 6.79 -51.93 -0.35 0.64 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.42 7.81 3.51 -40.82 -0.14 7.67 16 35 H 0.14 2.69 8.06 -52.49 -0.42 2.26 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.12 2.54 5.92 -52.49 -0.31 2.23 16 40 H 0.29 6.36 8.31 -40.82 -0.34 6.02 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.00 7.58 -51.93 -0.39 0.60 16 44 H 0.38 6.02 7.67 45.56 0.35 6.37 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -25.91 349.85 -7.69 -33.60 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -5.43 Total: 20.58 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.49 Total: -15.03 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.44 Total: -38.10 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.36 Total: -21.11 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.11 Total: 14.78 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -25.91 -7.69 -33.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590873434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.434 kcal (2) G-P(sol) polarization free energy of solvation -25.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds