Wall clock time and date at job start Tue Mar 31 2020 11:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47335 * 2 1 4 4 H 1.08999 * 109.47179 * 54.90831 * 3 2 1 5 5 N 1.46500 * 109.46907 * 294.89987 * 3 2 1 6 6 C 1.34779 * 119.99331 * 98.26617 * 5 3 2 7 7 O 1.21668 * 120.00317 * 5.10230 * 6 5 3 8 8 C 1.46891 * 119.99774 * 185.09775 * 6 5 3 9 9 C 1.36124 * 125.43664 * 186.31420 * 8 6 5 10 10 C 1.41700 * 107.74365 * 180.28057 * 9 8 6 11 11 C 1.40024 * 133.35066 * 179.77940 * 10 9 8 12 12 C 1.36570 * 119.83433 * 179.97438 * 11 10 9 13 13 C 1.38856 * 120.60222 * 359.95648 * 12 11 10 14 14 C 1.37848 * 120.63073 * 0.02608 * 13 12 11 15 15 C 1.39092 * 119.81381 * 359.97438 * 14 13 12 16 16 N 1.37832 * 133.16573 * 180.02562 * 15 14 13 17 17 C 1.36893 * 125.61698 * 359.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 224.53582 * 17 16 15 19 19 C 1.39014 * 120.00233 * 44.53751 * 17 16 15 20 20 N 1.31351 * 119.99953 * 196.85181 * 19 17 16 21 21 Si 1.86803 * 119.99794 * 16.84343 * 19 17 16 22 22 H 1.48493 * 109.47314 * 264.72027 * 21 19 17 23 23 H 1.48497 * 109.47068 * 24.72135 * 21 19 17 24 24 H 1.48502 * 109.46707 * 144.71912 * 21 19 17 25 25 C 1.53006 * 109.46986 * 174.90220 * 3 2 1 26 26 H 1.08993 * 109.47358 * 299.25390 * 25 3 2 27 27 C 1.52994 * 109.46887 * 179.25171 * 25 3 2 28 28 O 1.42908 * 109.46981 * 59.25545 * 25 3 2 29 29 H 1.09003 * 109.46638 * 60.00047 * 1 2 3 30 30 H 1.08994 * 109.47421 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47021 * 300.00658 * 1 2 3 32 32 H 1.09000 * 109.47298 * 239.99729 * 2 1 3 33 33 H 1.09006 * 109.47101 * 120.00146 * 2 1 3 34 34 H 0.96992 * 120.00345 * 278.26835 * 5 3 2 35 35 H 1.07994 * 126.12629 * 0.02562 * 9 8 6 36 36 H 1.08006 * 120.08280 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.69981 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.68455 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.09248 * 179.97438 * 14 13 12 40 40 H 0.96999 * 119.99426 * 174.98902 * 20 19 17 41 41 H 1.08998 * 109.47113 * 60.00470 * 27 25 3 42 42 H 1.09001 * 109.47093 * 180.02562 * 27 25 3 43 43 H 1.09002 * 109.47240 * 300.00114 * 27 25 3 44 44 H 0.96697 * 113.99799 * 65.70865 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6042 1.9820 0.8409 5 7 1.6546 2.0967 -1.2528 6 6 0.5644 2.8883 -1.2919 7 8 -0.0459 3.1342 -0.2685 8 6 0.1131 3.4541 -2.5701 9 6 -0.8931 4.3584 -2.7216 10 6 -1.0157 4.6404 -4.1048 11 6 -1.8634 5.4741 -4.8444 12 6 -1.7382 5.5374 -6.2029 13 6 -0.7759 4.7822 -6.8601 14 6 0.0704 3.9545 -6.1537 15 6 -0.0380 3.8733 -4.7694 16 7 0.6450 3.1565 -3.8106 17 6 1.6759 2.2878 -4.0484 18 1 1.7002 1.3295 -3.5509 19 6 2.6916 2.6391 -4.9301 20 7 3.4889 1.7149 -5.4154 21 14 2.9224 4.4255 -5.4250 22 1 2.2144 4.6800 -6.7052 23 1 2.3662 5.3078 -4.3679 24 1 4.3702 4.7089 -5.5951 25 6 3.5647 1.4443 0.1282 26 1 3.8510 0.9694 1.0665 27 6 4.0763 2.8861 0.1094 28 8 4.1355 0.7221 -0.9649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1838 1.9603 -2.0541 35 1 -1.4933 4.7815 -1.9298 36 1 -2.6144 6.0656 -4.3418 37 1 -2.3935 6.1808 -6.7712 38 1 -0.6896 4.8440 -7.9348 39 1 0.8154 3.3708 -6.6737 40 1 4.1503 1.9481 -6.0855 41 1 3.6410 3.4369 0.9432 42 1 5.1625 2.8874 0.2003 43 1 3.7900 3.3611 -0.8290 44 1 3.9952 1.1375 -1.8268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590873434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:28 Heat of formation + Delta-G solvation = -48.532701 kcal Electronic energy + Delta-G solvation = -27820.388594 eV Core-core repulsion = 24123.249905 eV Total energy + Delta-G solvation = -3697.138688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52299 -40.81300 -38.82218 -37.78088 -35.89933 -35.36725 -33.39335 -33.04463 -31.83861 -30.82370 -29.90224 -27.60612 -26.73437 -24.87051 -23.03619 -22.82652 -22.30108 -21.40993 -21.05170 -20.18681 -18.51127 -17.93875 -17.60908 -16.91632 -16.78541 -16.41511 -16.11093 -15.74766 -15.57062 -15.44739 -15.29997 -15.01352 -14.79239 -14.62779 -14.35711 -14.02794 -13.77003 -13.66888 -13.46519 -13.19678 -12.95536 -12.73699 -12.62527 -12.49837 -12.34393 -12.29097 -12.06711 -11.98122 -11.70002 -11.54980 -11.31386 -11.13971 -11.06538 -10.43660 -9.95742 -9.05763 -8.83883 -8.62292 -6.60701 -0.04181 0.88256 1.10287 1.19649 1.32724 1.35978 1.99936 2.19977 2.30850 2.45246 2.79497 3.13048 3.31400 3.64612 3.92579 3.93705 4.02736 4.12629 4.25393 4.28234 4.31540 4.36618 4.47144 4.56810 4.63929 4.66703 4.79550 4.80232 4.89175 4.96146 4.98957 5.02219 5.11511 5.17196 5.18494 5.25082 5.34899 5.36963 5.56542 5.67695 5.70936 5.80148 5.98036 6.03446 6.37301 6.53323 6.56597 6.76702 7.20824 7.25289 8.19856 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.005933 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.229676 B = 4718.362238 C = 5834.059744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.103 3.897 4 H 0.096 0.904 5 N -0.711 5.711 6 C 0.596 3.404 7 O -0.570 6.570 8 C -0.037 4.037 9 C -0.163 4.163 10 C -0.146 4.146 11 C -0.076 4.076 12 C -0.152 4.152 13 C -0.112 4.112 14 C -0.142 4.142 15 C 0.043 3.957 16 N -0.292 5.292 17 C -0.380 4.380 18 H 0.108 0.892 19 C 0.071 3.929 20 N -0.845 5.845 21 Si 0.909 3.091 22 H -0.232 1.232 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.101 3.899 26 H 0.134 0.866 27 C -0.183 4.183 28 O -0.569 6.569 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.412 0.588 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.295 0.705 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 2.588 3.609 4.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.001 4.001 4 H 0.114 0.886 5 N -0.369 5.369 6 C 0.384 3.616 7 O -0.451 6.451 8 C -0.151 4.151 9 C -0.190 4.190 10 C -0.151 4.151 11 C -0.094 4.094 12 C -0.171 4.171 13 C -0.132 4.132 14 C -0.162 4.162 15 C -0.070 4.070 16 N 0.041 4.959 17 C -0.506 4.506 18 H 0.125 0.875 19 C -0.142 4.142 20 N -0.474 5.474 21 Si 0.734 3.266 22 H -0.156 1.156 23 H -0.208 1.208 24 H -0.202 1.202 25 C 0.041 3.959 26 H 0.152 0.848 27 C -0.241 4.241 28 O -0.375 6.375 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.257 0.743 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.099 1.946 4.703 5.207 hybrid contribution 0.417 0.754 -1.164 1.448 sum -0.682 2.700 3.538 4.502 Atomic orbital electron populations 1.21659 0.96242 1.01300 1.00663 1.21778 0.95534 0.95374 1.03299 1.21988 0.96355 0.94072 0.87724 0.88584 1.46590 1.28060 1.47578 1.14684 1.17105 0.80398 0.77710 0.86349 1.90687 1.57653 1.62577 1.34219 1.20635 1.03562 1.05213 0.85698 1.20757 1.01259 1.01614 0.95398 1.18412 1.00235 1.03125 0.93290 1.20635 0.97625 0.97002 0.94175 1.20874 1.00251 1.01956 0.94001 1.21118 0.95382 0.96364 1.00342 1.20327 1.02409 1.02886 0.90558 1.18893 0.96270 1.00228 0.91647 1.40268 1.23264 1.29716 1.02646 1.19073 1.00971 0.98498 1.32101 0.87463 1.25729 0.93567 1.00729 0.94199 1.69644 1.19103 1.34704 1.23965 0.86368 0.77879 0.80852 0.81540 1.15557 1.20785 1.20219 1.22359 0.89266 0.92600 0.91629 0.84814 1.22462 1.02486 0.96692 1.02441 1.86515 1.79502 1.53222 1.18242 0.96038 0.91593 0.92688 0.92336 0.88555 0.74293 0.83117 0.83877 0.82718 0.83627 0.87551 0.89393 0.90658 0.90551 0.94151 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.30 71.98 0.67 -3.69 16 2 C -0.12 -3.46 5.38 30.60 0.16 -3.30 16 3 C 0.10 3.14 2.10 45.00 0.09 3.23 16 4 H 0.10 3.01 7.14 -2.39 -0.02 2.99 16 5 N -0.71 -26.63 3.71 -446.28 -1.65 -28.29 16 6 C 0.60 25.62 6.39 86.51 0.55 26.17 16 7 O -0.57 -25.48 16.00 -4.25 -0.07 -25.55 16 8 C -0.04 -1.72 6.77 39.91 0.27 -1.45 16 9 C -0.16 -7.04 10.55 22.63 0.24 -6.80 16 10 C -0.15 -6.13 6.16 -21.33 -0.13 -6.26 16 11 C -0.08 -2.54 10.06 22.31 0.22 -2.31 16 12 C -0.15 -4.53 9.97 22.03 0.22 -4.31 16 13 C -0.11 -3.74 10.02 22.33 0.22 -3.51 16 14 C -0.14 -5.90 6.81 22.38 0.15 -5.75 16 15 C 0.04 1.95 5.14 39.06 0.20 2.15 16 16 N -0.29 -13.93 2.39 -331.34 -0.79 -14.72 16 17 C -0.38 -18.37 8.03 84.09 0.68 -17.69 16 18 H 0.11 5.39 6.74 -2.91 -0.02 5.37 16 19 C 0.07 3.39 4.99 84.95 0.42 3.81 16 20 N -0.84 -40.59 13.95 21.67 0.30 -40.29 16 21 Si 0.91 39.61 24.21 68.60 1.66 41.27 16 22 H -0.23 -9.49 5.66 99.48 0.56 -8.93 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.10 2.65 3.44 30.59 0.11 2.76 16 26 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 27 C -0.18 -4.81 9.32 71.98 0.67 -4.14 16 28 O -0.57 -17.54 12.72 -148.98 -1.89 -19.43 16 29 H 0.02 0.78 6.79 -2.39 -0.02 0.76 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.84 7.82 -2.39 -0.02 1.82 16 33 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.41 16.35 3.51 -92.71 -0.33 16.03 16 35 H 0.15 5.90 8.06 -2.91 -0.02 5.87 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.11 4.59 5.92 -2.91 -0.02 4.58 16 40 H 0.30 13.15 8.31 -92.71 -0.77 12.38 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.04 1.25 7.58 -2.39 -0.02 1.24 16 44 H 0.38 12.36 7.67 -74.06 -0.57 11.79 16 Total: -1.00 -57.51 349.85 2.31 -55.21 By element: Atomic # 1 Polarization: 52.90 SS G_CDS: 0.00 Total: 52.89 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.76 Total: -21.09 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.14 Total: -83.29 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.96 Total: -44.98 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.66 Total: 41.27 kcal Total: -57.51 2.31 -55.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590873434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.674 kcal (2) G-P(sol) polarization free energy of solvation -57.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds