Wall clock time and date at job start Tue Mar 31 2020 11:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46937 * 2 1 4 4 H 1.09003 * 109.47233 * 55.00601 * 3 2 1 5 5 N 1.46497 * 109.47349 * 294.99989 * 3 2 1 6 6 C 1.34784 * 119.99952 * 99.77733 * 5 3 2 7 7 O 1.21668 * 119.99800 * 4.96655 * 6 5 3 8 8 C 1.46886 * 120.00310 * 184.96654 * 6 5 3 9 9 C 1.36115 * 125.43989 * 173.90164 * 8 6 5 10 10 C 1.41700 * 107.74873 * 180.28139 * 9 8 6 11 11 C 1.40027 * 133.34924 * 179.78282 * 10 9 8 12 12 C 1.36577 * 119.82986 * 179.97438 * 11 10 9 13 13 C 1.38854 * 120.59786 * 359.95140 * 12 11 10 14 14 C 1.37844 * 120.63679 * 0.02885 * 13 12 11 15 15 C 1.39083 * 119.81121 * 359.97438 * 14 13 12 16 16 N 1.37840 * 133.16022 * 180.02562 * 15 14 13 17 17 C 1.36891 * 125.62305 * 359.97344 * 16 15 14 18 18 H 1.07994 * 119.99960 * 134.84806 * 17 16 15 19 19 C 1.39012 * 119.99577 * 314.85097 * 17 16 15 20 20 N 1.31346 * 120.00314 * 341.14764 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 161.14927 * 19 17 16 22 22 H 1.48501 * 109.46953 * 275.02487 * 21 19 17 23 23 H 1.48499 * 109.47113 * 35.02058 * 21 19 17 24 24 H 1.48495 * 109.47085 * 155.02107 * 21 19 17 25 25 C 1.52995 * 109.46845 * 175.00292 * 3 2 1 26 26 H 1.09000 * 109.47450 * 60.32690 * 25 3 2 27 27 C 1.52999 * 109.47069 * 180.32835 * 25 3 2 28 28 O 1.42907 * 109.47327 * 300.32419 * 25 3 2 29 29 H 1.09001 * 109.47019 * 59.99872 * 1 2 3 30 30 H 1.08997 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46855 * 299.99510 * 1 2 3 32 32 H 1.08999 * 109.46496 * 240.00120 * 2 1 3 33 33 H 1.08996 * 109.47347 * 120.00448 * 2 1 3 34 34 H 0.96997 * 120.00263 * 279.78024 * 5 3 2 35 35 H 1.07998 * 126.12560 * 0.02562 * 9 8 6 36 36 H 1.08002 * 120.08424 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.69742 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.68166 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.09377 * 179.97438 * 14 13 12 40 40 H 0.96996 * 119.99902 * 352.62169 * 20 19 17 41 41 H 1.09003 * 109.47559 * 180.02562 * 27 25 3 42 42 H 1.08998 * 109.47223 * 299.99460 * 27 25 3 43 43 H 1.09003 * 109.47589 * 59.99784 * 27 25 3 44 44 H 0.96696 * 113.99651 * 179.97438 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6525 2.0975 -1.2518 6 6 0.5799 2.9132 -1.2816 7 8 -0.0124 3.1771 -0.2521 8 6 0.1260 3.4834 -2.5568 9 6 -1.0047 4.2202 -2.7340 10 6 -1.0809 4.5717 -4.1046 11 6 -2.0052 5.3047 -4.8590 12 6 -1.8028 5.4794 -6.1983 13 6 -0.6864 4.9371 -6.8211 14 6 0.2376 4.2121 -6.0995 15 6 0.0529 4.0207 -4.7344 16 7 0.7812 3.3611 -3.7677 17 6 1.9562 2.6897 -3.9742 18 1 2.7822 2.8244 -3.2916 19 6 2.0860 1.8346 -5.0625 20 7 1.0150 1.3788 -5.6710 21 14 3.7838 1.3338 -5.6594 22 1 4.3062 2.3670 -6.5893 23 1 4.6992 1.2056 -4.4972 24 1 3.6955 0.0308 -6.3661 25 6 3.5648 1.4443 0.1256 26 1 3.9997 0.9103 -0.7192 27 6 4.0741 2.8870 0.1339 28 8 3.9433 0.7987 1.3431 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1677 1.9442 -2.0591 35 1 -1.7183 4.4855 -1.9680 36 1 -2.8760 5.7308 -4.3829 37 1 -2.5173 6.0448 -6.7782 38 1 -0.5407 5.0848 -7.8810 39 1 1.1025 3.7939 -6.5929 40 1 0.1358 1.5503 -5.2990 41 1 5.1605 2.8884 0.2229 42 1 3.7856 3.3795 -0.7947 43 1 3.6393 3.4211 0.9788 44 1 4.8985 0.7629 1.4888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590873437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:41 Heat of formation + Delta-G solvation = -44.237007 kcal Electronic energy + Delta-G solvation = -27497.096330 eV Core-core repulsion = 23800.143917 eV Total energy + Delta-G solvation = -3696.952413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76162 -39.21432 -37.49255 -36.14686 -34.98383 -33.79501 -31.90930 -30.76175 -30.57329 -29.04727 -28.13850 -26.34915 -24.87462 -23.21462 -21.85153 -21.11824 -20.68204 -20.13708 -19.49096 -18.46827 -17.44331 -16.51806 -15.75402 -15.59433 -15.11405 -14.96132 -14.58378 -14.49522 -14.15725 -13.95236 -13.71447 -13.27188 -13.17615 -13.02362 -12.77234 -12.48018 -12.33697 -12.28016 -12.06588 -11.81951 -11.54315 -11.25855 -11.09270 -10.93344 -10.67654 -10.61531 -10.52563 -10.44666 -10.41033 -10.00490 -9.95529 -9.46156 -9.26370 -8.88715 -8.54919 -7.59689 -7.11418 -6.80728 -4.80617 1.65679 2.55216 2.93765 3.00487 3.02651 3.18127 3.52923 3.75321 4.13718 4.29421 4.44681 4.67151 4.76193 4.82788 5.01329 5.18119 5.45512 5.48294 5.53986 5.65446 5.72776 5.77588 5.80705 5.90998 5.97295 6.11020 6.13928 6.23045 6.24287 6.26585 6.34488 6.43629 6.50169 6.64842 6.70348 6.82486 6.90792 7.02181 7.16194 7.32301 7.41231 7.50740 7.57979 7.70757 7.74987 8.08145 8.19815 8.57594 8.88069 9.04140 10.01175 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.005550 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.612759 B = 5043.384233 C = 6338.624855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.146 3.854 4 H 0.099 0.901 5 N -0.718 5.718 6 C 0.600 3.400 7 O -0.554 6.554 8 C -0.018 4.018 9 C -0.165 4.165 10 C -0.129 4.129 11 C -0.081 4.081 12 C -0.160 4.160 13 C -0.134 4.134 14 C -0.081 4.081 15 C 0.074 3.926 16 N -0.267 5.267 17 C -0.453 4.453 18 H 0.100 0.900 19 C 0.031 3.969 20 N -0.819 5.819 21 Si 1.075 2.925 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.273 1.273 25 C 0.095 3.905 26 H 0.059 0.941 27 C -0.184 4.184 28 O -0.562 6.562 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.291 0.709 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -0.492 4.119 6.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.117 0.883 5 N -0.378 5.378 6 C 0.389 3.611 7 O -0.433 6.433 8 C -0.132 4.132 9 C -0.192 4.192 10 C -0.134 4.134 11 C -0.100 4.100 12 C -0.179 4.179 13 C -0.154 4.154 14 C -0.101 4.101 15 C -0.040 4.040 16 N 0.068 4.932 17 C -0.580 4.580 18 H 0.117 0.883 19 C -0.186 4.186 20 N -0.444 5.444 21 Si 0.898 3.102 22 H -0.200 1.200 23 H -0.202 1.202 24 H -0.198 1.198 25 C 0.035 3.965 26 H 0.077 0.923 27 C -0.242 4.242 28 O -0.367 6.367 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.262 0.738 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.187 -1.473 3.701 6.540 hybrid contribution 0.033 0.836 0.618 1.040 sum 5.221 -0.637 4.319 6.805 Atomic orbital electron populations 1.21692 0.95434 1.00757 1.02429 1.21847 0.96572 0.95934 1.02266 1.20752 0.91869 0.94143 0.89237 0.88313 1.46588 1.31089 1.47381 1.12788 1.17161 0.79613 0.77325 0.86956 1.90722 1.57160 1.61968 1.33418 1.20255 0.96556 1.09208 0.87210 1.20432 0.98386 1.05580 0.94827 1.18024 0.97348 1.04490 0.93505 1.20136 0.97737 0.98557 0.93526 1.20335 0.98891 1.04034 0.94619 1.20612 0.95386 1.00843 0.98578 1.20135 0.99818 0.99267 0.90900 1.18470 0.95024 0.98894 0.91586 1.40102 1.15758 1.33332 1.04009 1.20402 0.90573 1.28536 1.18478 0.88275 1.26811 1.06330 0.92314 0.93112 1.70554 1.00650 1.34910 1.38307 0.83400 0.71836 0.77803 0.77114 1.19961 1.20218 1.19811 1.21957 0.95314 0.92380 0.86811 0.92311 1.22477 1.00725 0.97308 1.03661 1.86466 1.28217 1.80736 1.41271 0.92664 0.93300 0.92634 0.92027 0.90585 0.73837 0.84811 0.87429 0.87526 0.87214 0.86566 0.89690 0.92479 0.91044 0.91776 0.77607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.45 37.16 0.35 -2.06 16 2 C -0.13 -1.98 5.53 -26.73 -0.15 -2.13 16 3 C 0.15 2.39 2.06 -67.94 -0.14 2.25 16 4 H 0.10 1.80 7.11 -51.93 -0.37 1.43 16 5 N -0.72 -13.56 3.86 -55.05 -0.21 -13.77 16 6 C 0.60 13.12 6.48 -12.76 -0.08 13.04 16 7 O -0.55 -12.84 16.13 5.22 0.08 -12.76 16 8 C -0.02 -0.42 6.77 -82.25 -0.56 -0.97 16 9 C -0.16 -3.75 10.55 -39.02 -0.41 -4.16 16 10 C -0.13 -2.91 6.16 -106.89 -0.66 -3.57 16 11 C -0.08 -1.58 10.06 -39.51 -0.40 -1.98 16 12 C -0.16 -2.93 9.97 -39.95 -0.40 -3.32 16 13 C -0.13 -2.59 10.02 -39.50 -0.40 -2.99 16 14 C -0.08 -1.82 8.81 -39.41 -0.35 -2.17 16 15 C 0.07 1.77 5.48 -83.84 -0.46 1.31 16 16 N -0.27 -6.40 2.51 -56.08 -0.14 -6.54 16 17 C -0.45 -10.40 7.62 -15.01 -0.11 -10.51 16 18 H 0.10 2.15 6.46 -52.49 -0.34 1.81 16 19 C 0.03 0.72 4.40 -17.47 -0.08 0.64 16 20 N -0.82 -20.44 12.29 55.50 0.68 -19.75 16 21 Si 1.08 19.71 29.96 -169.99 -5.09 14.62 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.28 -4.62 7.11 56.52 0.40 -4.22 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 C 0.09 1.28 3.30 -26.73 -0.09 1.19 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.18 -2.40 9.38 37.16 0.35 -2.05 16 28 O -0.56 -6.77 12.55 -35.23 -0.44 -7.21 16 29 H 0.05 1.06 6.86 -51.93 -0.36 0.70 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.09 7.53 -51.93 -0.39 0.70 16 34 H 0.42 8.03 4.59 -40.82 -0.19 7.84 16 35 H 0.13 2.83 8.06 -52.49 -0.42 2.40 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 2.67 7.07 -52.49 -0.37 2.30 16 40 H 0.29 7.76 7.26 -40.82 -0.30 7.47 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.05 7.61 -51.93 -0.40 0.65 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.38 2.81 9.08 45.56 0.41 3.23 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -27.57 359.31 -8.60 -36.16 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -5.32 Total: 21.32 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.58 Total: -17.48 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.33 Total: -40.06 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.36 Total: -19.97 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.09 Total: 14.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.57 -8.60 -36.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590873437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.072 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds