Wall clock time and date at job start Tue Mar 31 2020 11:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46937 * 2 1 4 4 H 1.09003 * 109.47233 * 55.00601 * 3 2 1 5 5 N 1.46497 * 109.47349 * 294.99989 * 3 2 1 6 6 C 1.34784 * 119.99952 * 99.77733 * 5 3 2 7 7 O 1.21668 * 119.99800 * 4.96655 * 6 5 3 8 8 C 1.46886 * 120.00310 * 184.96654 * 6 5 3 9 9 C 1.36115 * 125.43989 * 173.90164 * 8 6 5 10 10 C 1.41700 * 107.74873 * 180.28139 * 9 8 6 11 11 C 1.40027 * 133.34924 * 179.78282 * 10 9 8 12 12 C 1.36577 * 119.82986 * 179.97438 * 11 10 9 13 13 C 1.38854 * 120.59786 * 359.95140 * 12 11 10 14 14 C 1.37844 * 120.63679 * 0.02885 * 13 12 11 15 15 C 1.39083 * 119.81121 * 359.97438 * 14 13 12 16 16 N 1.37840 * 133.16022 * 180.02562 * 15 14 13 17 17 C 1.36891 * 125.62305 * 359.97344 * 16 15 14 18 18 H 1.07994 * 119.99960 * 134.84806 * 17 16 15 19 19 C 1.39012 * 119.99577 * 314.85097 * 17 16 15 20 20 N 1.31346 * 120.00314 * 341.14764 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 161.14927 * 19 17 16 22 22 H 1.48501 * 109.46953 * 275.02487 * 21 19 17 23 23 H 1.48499 * 109.47113 * 35.02058 * 21 19 17 24 24 H 1.48495 * 109.47085 * 155.02107 * 21 19 17 25 25 C 1.52995 * 109.46845 * 175.00292 * 3 2 1 26 26 H 1.09000 * 109.47450 * 60.32690 * 25 3 2 27 27 C 1.52999 * 109.47069 * 180.32835 * 25 3 2 28 28 O 1.42907 * 109.47327 * 300.32419 * 25 3 2 29 29 H 1.09001 * 109.47019 * 59.99872 * 1 2 3 30 30 H 1.08997 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46855 * 299.99510 * 1 2 3 32 32 H 1.08999 * 109.46496 * 240.00120 * 2 1 3 33 33 H 1.08996 * 109.47347 * 120.00448 * 2 1 3 34 34 H 0.96997 * 120.00263 * 279.78024 * 5 3 2 35 35 H 1.07998 * 126.12560 * 0.02562 * 9 8 6 36 36 H 1.08002 * 120.08424 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.69742 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.68166 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.09377 * 179.97438 * 14 13 12 40 40 H 0.96996 * 119.99902 * 352.62169 * 20 19 17 41 41 H 1.09003 * 109.47559 * 180.02562 * 27 25 3 42 42 H 1.08998 * 109.47223 * 299.99460 * 27 25 3 43 43 H 1.09003 * 109.47589 * 59.99784 * 27 25 3 44 44 H 0.96696 * 113.99651 * 179.97438 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6525 2.0975 -1.2518 6 6 0.5799 2.9132 -1.2816 7 8 -0.0124 3.1771 -0.2521 8 6 0.1260 3.4834 -2.5568 9 6 -1.0047 4.2202 -2.7340 10 6 -1.0809 4.5717 -4.1046 11 6 -2.0052 5.3047 -4.8590 12 6 -1.8028 5.4794 -6.1983 13 6 -0.6864 4.9371 -6.8211 14 6 0.2376 4.2121 -6.0995 15 6 0.0529 4.0207 -4.7344 16 7 0.7812 3.3611 -3.7677 17 6 1.9562 2.6897 -3.9742 18 1 2.7822 2.8244 -3.2916 19 6 2.0860 1.8346 -5.0625 20 7 1.0150 1.3788 -5.6710 21 14 3.7838 1.3338 -5.6594 22 1 4.3062 2.3670 -6.5893 23 1 4.6992 1.2056 -4.4972 24 1 3.6955 0.0308 -6.3661 25 6 3.5648 1.4443 0.1256 26 1 3.9997 0.9103 -0.7192 27 6 4.0741 2.8870 0.1339 28 8 3.9433 0.7987 1.3431 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1677 1.9442 -2.0591 35 1 -1.7183 4.4855 -1.9680 36 1 -2.8760 5.7308 -4.3829 37 1 -2.5173 6.0448 -6.7782 38 1 -0.5407 5.0848 -7.8810 39 1 1.1025 3.7939 -6.5929 40 1 0.1358 1.5503 -5.2990 41 1 5.1605 2.8884 0.2229 42 1 3.7856 3.3795 -0.7947 43 1 3.6393 3.4211 0.9788 44 1 4.8985 0.7629 1.4888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590873437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:40 Heat of formation + Delta-G solvation = -60.409537 kcal Electronic energy + Delta-G solvation = -27497.797623 eV Core-core repulsion = 23800.143917 eV Total energy + Delta-G solvation = -3697.653707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45069 -40.73170 -38.76667 -37.77519 -36.33605 -35.49987 -33.36645 -32.41779 -31.77910 -30.66697 -29.77053 -27.67098 -26.62761 -24.79850 -23.03254 -22.78467 -22.17395 -21.65321 -21.17046 -20.11523 -18.68600 -18.00480 -17.47114 -17.01446 -16.66104 -16.47579 -16.07820 -15.73329 -15.60209 -15.46327 -15.15683 -14.87457 -14.79501 -14.61038 -14.12435 -13.93302 -13.90091 -13.58244 -13.36179 -13.31566 -12.77134 -12.66302 -12.51049 -12.39463 -12.18104 -12.11393 -11.96940 -11.93610 -11.69098 -11.57160 -11.18125 -11.01112 -10.96418 -10.59070 -10.07973 -9.36581 -8.83907 -8.51675 -6.61667 -0.01824 0.94300 1.25938 1.50995 1.55519 1.75538 2.06969 2.21632 2.42615 2.62486 2.87797 3.17739 3.38298 3.61113 3.86712 3.96581 4.02078 4.09438 4.20830 4.28130 4.31238 4.39922 4.43654 4.59887 4.61589 4.68462 4.81262 4.83686 4.87398 4.89210 4.95982 5.04999 5.09411 5.13701 5.18047 5.26326 5.28252 5.41904 5.53194 5.67882 5.73117 5.81513 6.02056 6.06120 6.41895 6.52541 6.84161 6.86646 7.20832 7.29476 8.16283 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.005550 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.612759 B = 5043.384233 C = 6338.624855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.140 3.860 4 H 0.078 0.922 5 N -0.706 5.706 6 C 0.598 3.402 7 O -0.576 6.576 8 C -0.043 4.043 9 C -0.177 4.177 10 C -0.149 4.149 11 C -0.085 4.085 12 C -0.151 4.151 13 C -0.121 4.121 14 C -0.111 4.111 15 C 0.050 3.950 16 N -0.281 5.281 17 C -0.461 4.461 18 H 0.108 0.892 19 C 0.002 3.998 20 N -0.844 5.844 21 Si 1.118 2.882 22 H -0.269 1.269 23 H -0.245 1.245 24 H -0.279 1.279 25 C 0.105 3.895 26 H 0.071 0.929 27 C -0.181 4.181 28 O -0.568 6.568 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.415 0.585 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.100 0.900 40 H 0.268 0.732 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -0.416 3.664 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.035 3.965 4 H 0.096 0.904 5 N -0.364 5.364 6 C 0.387 3.613 7 O -0.457 6.457 8 C -0.157 4.157 9 C -0.205 4.205 10 C -0.154 4.154 11 C -0.104 4.104 12 C -0.170 4.170 13 C -0.141 4.141 14 C -0.131 4.131 15 C -0.064 4.064 16 N 0.053 4.947 17 C -0.587 4.587 18 H 0.125 0.875 19 C -0.209 4.209 20 N -0.470 5.470 21 Si 0.934 3.066 22 H -0.194 1.194 23 H -0.169 1.169 24 H -0.204 1.204 25 C 0.046 3.954 26 H 0.089 0.911 27 C -0.238 4.238 28 O -0.376 6.376 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.260 0.740 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.169 0.831 38 H 0.160 0.840 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.382 -1.397 3.275 7.308 hybrid contribution -0.415 0.884 0.758 1.236 sum 5.968 -0.513 4.033 7.221 Atomic orbital electron populations 1.21655 0.96491 1.01438 1.00374 1.21821 0.95550 0.95373 1.03241 1.20936 0.94400 0.94054 0.87124 0.90371 1.46477 1.29852 1.46384 1.13719 1.17101 0.80200 0.77748 0.86273 1.90688 1.58091 1.63105 1.33858 1.20631 0.97279 1.09927 0.87893 1.20666 0.98587 1.05743 0.95494 1.18395 0.98022 1.05417 0.93537 1.20559 0.97912 0.97706 0.94206 1.20815 0.98860 1.02991 0.94325 1.21080 0.94466 0.98523 1.00022 1.20206 1.00839 1.01437 0.90666 1.18902 0.95659 0.99501 0.92329 1.40258 1.16249 1.33980 1.04175 1.20699 0.90604 1.28503 1.18909 0.87479 1.28168 1.08474 0.91427 0.92822 1.70683 1.00145 1.36986 1.39145 0.82931 0.68640 0.77123 0.77863 1.19387 1.16874 1.20435 1.21714 0.92814 0.92955 0.87950 0.91102 1.22449 1.02739 0.96648 1.01998 1.86416 1.30595 1.80321 1.40278 0.96047 0.91231 0.93278 0.91734 0.88635 0.73986 0.84039 0.84519 0.83112 0.84001 0.88143 0.92133 0.89294 0.93173 0.92888 0.74927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.45 71.98 0.68 -4.08 16 2 C -0.12 -3.68 5.53 30.60 0.17 -3.51 16 3 C 0.14 4.57 2.06 44.99 0.09 4.66 16 4 H 0.08 2.91 7.11 -2.39 -0.02 2.89 16 5 N -0.71 -27.36 3.86 -446.31 -1.72 -29.09 16 6 C 0.60 27.32 6.48 86.51 0.56 27.89 16 7 O -0.58 -27.96 16.13 -4.25 -0.07 -28.03 16 8 C -0.04 -2.11 6.77 39.91 0.27 -1.84 16 9 C -0.18 -8.37 10.55 22.63 0.24 -8.13 16 10 C -0.15 -6.84 6.16 -21.34 -0.13 -6.98 16 11 C -0.09 -3.21 10.06 22.32 0.22 -2.98 16 12 C -0.15 -5.09 9.97 22.03 0.22 -4.87 16 13 C -0.12 -4.46 10.02 22.32 0.22 -4.24 16 14 C -0.11 -5.04 8.81 22.38 0.20 -4.84 16 15 C 0.05 2.44 5.48 39.06 0.21 2.66 16 16 N -0.28 -13.98 2.51 -331.35 -0.83 -14.81 16 17 C -0.46 -21.67 7.62 84.09 0.64 -21.03 16 18 H 0.11 4.70 6.46 -2.91 -0.02 4.68 16 19 C 0.00 0.09 4.40 84.95 0.37 0.47 16 20 N -0.84 -43.42 12.29 21.67 0.27 -43.16 16 21 Si 1.12 39.02 29.96 68.60 2.06 41.07 16 22 H -0.27 -9.11 7.11 99.48 0.71 -8.41 16 23 H -0.25 -7.27 7.11 99.48 0.71 -6.56 16 24 H -0.28 -9.97 7.11 99.48 0.71 -9.27 16 25 C 0.11 2.66 3.30 30.59 0.10 2.77 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 C -0.18 -4.47 9.38 71.98 0.68 -3.79 16 28 O -0.57 -12.16 12.55 -148.98 -1.87 -14.03 16 29 H 0.02 0.83 6.86 -2.39 -0.02 0.82 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.55 7.53 -2.39 -0.02 2.53 16 34 H 0.41 16.32 4.59 -92.71 -0.43 15.90 16 35 H 0.14 6.22 8.06 -2.91 -0.02 6.19 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 39 H 0.10 4.76 7.07 -2.91 -0.02 4.74 16 40 H 0.27 15.01 7.26 -92.71 -0.67 14.34 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.45 7.61 -2.39 -0.02 1.43 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.40 4.58 9.08 -74.06 -0.67 3.90 16 Total: -1.00 -62.97 359.31 2.61 -60.36 By element: Atomic # 1 Polarization: 55.50 SS G_CDS: 0.03 Total: 55.53 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.75 Total: -27.85 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.29 Total: -87.05 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.94 Total: -42.06 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.06 Total: 41.07 kcal Total: -62.97 2.61 -60.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590873437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.047 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds