Wall clock time and date at job start Tue Mar 31 2020 10:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47336 * 120.00211 * 2 1 3 5 5 S 1.81398 * 109.46859 * 65.00016 * 4 2 1 6 6 C 1.81400 * 103.00089 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47492 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47267 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99751 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00304 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99610 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64903 * 359.95841 * 11 9 8 13 13 C 1.54371 * 107.28632 * 181.12818 * 12 11 9 14 14 C 1.55156 * 102.92059 * 22.13773 * 13 12 11 15 15 O 1.42894 * 111.00351 * 82.64238 * 14 13 12 16 16 C 1.50705 * 111.00016 * 206.45621 * 14 13 12 17 17 H 1.07993 * 120.00222 * 356.18276 * 16 14 13 18 18 C 1.37881 * 119.99392 * 175.91314 * 16 14 13 19 19 N 1.31509 * 120.00570 * 354.23595 * 18 16 14 20 20 Si 1.86802 * 119.99449 * 174.23797 * 18 16 14 21 21 H 1.48500 * 109.47140 * 94.98922 * 20 18 16 22 22 H 1.48506 * 109.47182 * 214.98446 * 20 18 16 23 23 H 1.48500 * 109.47323 * 334.98680 * 20 18 16 24 24 C 1.47424 * 125.64568 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.46745 * 59.99552 * 1 2 3 26 26 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47243 * 299.99664 * 1 2 3 28 28 H 1.09001 * 109.47243 * 240.00336 * 2 1 3 29 29 H 1.08994 * 109.47272 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47185 * 300.00656 * 3 2 1 31 31 H 1.09001 * 109.46727 * 60.00019 * 3 2 1 32 32 H 1.08996 * 109.46959 * 305.00029 * 4 2 1 33 33 H 1.08994 * 109.47110 * 184.99930 * 4 2 1 34 34 H 1.08995 * 109.47166 * 59.99792 * 6 5 4 35 35 H 1.09004 * 109.46847 * 299.99745 * 6 5 4 36 36 H 1.09004 * 109.47132 * 59.99450 * 7 6 5 37 37 H 1.09004 * 109.46822 * 300.00195 * 7 6 5 38 38 H 0.96999 * 119.99964 * 359.97438 * 8 7 6 39 39 H 1.08996 * 109.87865 * 300.51069 * 12 11 9 40 40 H 1.09004 * 109.88436 * 61.67611 * 12 11 9 41 41 H 1.09003 * 110.70184 * 263.79158 * 13 12 11 42 42 H 1.08998 * 110.75668 * 140.50398 * 13 12 11 43 43 H 0.96708 * 113.99643 * 183.17715 * 15 14 13 44 44 H 0.96997 * 120.00732 * 179.97438 * 19 18 16 45 45 H 1.08999 * 110.36723 * 36.99330 * 24 11 9 46 46 H 1.09001 * 110.45885 * 274.72191 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 1.5602 -2.4691 1.1764 6 6 2.2418 -3.1439 2.7161 7 6 1.9172 -4.6363 2.8067 8 7 2.4682 -5.1813 4.0498 9 6 2.3043 -6.4863 4.3445 10 8 1.6987 -7.2110 3.5788 11 7 2.8117 -6.9878 5.4880 12 6 3.5625 -6.2279 6.4981 13 6 3.9645 -7.2182 7.6120 14 6 3.9049 -8.5918 6.8930 15 8 5.1086 -8.8414 6.1646 16 6 3.6298 -9.7030 7.8733 17 1 3.5654 -9.4876 8.9296 18 6 3.4548 -10.9936 7.4209 19 7 3.4147 -11.2381 6.1293 20 14 3.2745 -12.3951 8.6427 21 1 1.8332 -12.6606 8.8823 22 1 3.9181 -13.6159 8.0943 23 1 3.9287 -12.0231 9.9229 24 6 2.7060 -8.3894 5.9328 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 1.8018 -2.6237 3.5669 35 1 3.3231 -3.0064 2.7257 36 1 2.3575 -5.1562 1.9558 37 1 0.8360 -4.7742 2.7968 38 1 2.9517 -4.6032 4.6605 39 1 4.4556 -5.7948 6.0479 40 1 2.9338 -5.4394 6.9118 41 1 3.2510 -7.1825 8.4353 42 1 4.9745 -7.0119 7.9662 43 1 5.0989 -9.6660 5.6595 44 1 3.2919 -12.1461 5.8111 45 1 2.7841 -9.0647 5.0808 46 1 1.7659 -8.5520 6.4598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591996139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:17 Heat of formation + Delta-G solvation = -95.934915 kcal Electronic energy + Delta-G solvation = -24082.277012 eV Core-core repulsion = 20518.526760 eV Total energy + Delta-G solvation = -3563.750251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64079 -37.46700 -36.58221 -35.01845 -34.23241 -32.21761 -30.92833 -29.59860 -27.91816 -27.68678 -27.55577 -25.13393 -23.30598 -22.28496 -20.64370 -19.68507 -19.55160 -17.61557 -17.05778 -16.52000 -16.05869 -15.81871 -15.45312 -15.05209 -14.78322 -14.71859 -14.40087 -14.32315 -13.86037 -13.41479 -13.09654 -13.00854 -12.78860 -12.64646 -12.45794 -12.19676 -12.02075 -11.88536 -11.67851 -11.51501 -11.39858 -11.29348 -11.19944 -11.02104 -10.78992 -10.59048 -10.48944 -10.21538 -10.19252 -9.61293 -9.33935 -8.86782 -8.70988 -8.35238 -7.92068 -7.67562 -6.26487 -4.36582 1.22721 2.26297 3.19751 3.24462 3.29580 3.33014 3.75381 4.26403 4.26712 4.37687 4.51617 4.55787 4.65073 4.66514 4.97067 4.99503 5.11371 5.17034 5.20642 5.24828 5.40197 5.44438 5.51532 5.63219 5.67105 5.72227 5.73416 5.84055 5.84859 5.93727 5.99930 6.11962 6.51351 6.68969 6.70945 6.90705 6.97889 7.26097 7.33327 7.64396 7.75621 8.02942 8.53309 8.67580 9.13251 9.31106 9.36597 10.79810 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.040871 B = 0.002071 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.914751 B =13518.158106 C =13840.462075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.084 4.084 5 S -0.236 6.236 6 C -0.104 4.104 7 C 0.159 3.841 8 N -0.751 5.751 9 C 0.717 3.283 10 O -0.594 6.594 11 N -0.628 5.628 12 C 0.105 3.895 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.582 6.582 16 C -0.540 4.540 17 H 0.067 0.933 18 C 0.071 3.929 19 N -0.890 5.890 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.114 3.886 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.381 0.619 44 H 0.270 0.730 45 H 0.086 0.914 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 22.581 -7.574 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.233 4.233 5 S -0.010 6.010 6 C -0.253 4.253 7 C 0.033 3.967 8 N -0.410 5.410 9 C 0.419 3.581 10 O -0.472 6.472 11 N -0.365 5.365 12 C -0.018 4.018 13 C -0.154 4.154 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.528 5.528 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.231 0.769 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.806 21.931 -8.852 23.815 hybrid contribution 0.654 -0.344 1.661 1.817 sum -2.152 21.587 -7.191 22.855 Atomic orbital electron populations 1.21920 0.94271 1.02883 1.01786 1.20894 0.96767 0.95799 0.96568 1.21846 1.01110 0.95113 1.02215 1.23543 1.03702 0.93827 1.02205 1.86963 1.75652 1.08620 1.29730 1.23548 1.03958 0.99413 0.98362 1.20652 0.99661 0.89219 0.87159 1.45066 1.62533 1.09237 1.24119 1.15474 0.79985 0.81327 0.81333 1.90898 1.47720 1.58475 1.50136 1.47954 1.56551 1.12991 1.18989 1.21931 0.94600 0.94969 0.90338 1.22596 1.01322 0.95199 0.96234 1.19633 0.81309 0.90660 0.87707 1.86097 1.39475 1.46345 1.67157 1.21457 1.50451 0.92112 0.93787 0.91505 1.25090 0.93411 0.99211 0.95551 1.69762 1.48725 1.21694 1.12622 0.86405 0.78250 0.81209 0.81125 1.20533 1.20929 1.19665 1.23165 1.00247 0.77718 0.99609 0.92524 0.91366 0.92566 0.90192 0.92485 0.92044 0.92480 0.90054 0.90044 0.89492 0.89467 0.90886 0.90919 0.77401 0.92724 0.93210 0.90411 0.90788 0.76948 0.91988 0.89580 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.02 37.16 0.34 -0.66 16 2 C -0.08 -0.52 2.92 -90.62 -0.26 -0.78 16 3 C -0.14 -0.72 9.19 37.16 0.34 -0.38 16 4 C -0.08 -0.59 5.38 37.16 0.20 -0.39 16 5 S -0.24 -2.31 20.55 -107.50 -2.21 -4.52 16 6 C -0.10 -0.99 6.05 37.16 0.22 -0.76 16 7 C 0.16 2.11 5.68 -4.05 -0.02 2.09 16 8 N -0.75 -11.38 5.52 -65.22 -0.36 -11.74 16 9 C 0.72 14.87 8.49 -86.91 -0.74 14.13 16 10 O -0.59 -14.78 16.60 5.29 0.09 -14.69 16 11 N -0.63 -13.15 3.33 -176.20 -0.59 -13.73 16 12 C 0.11 1.81 6.15 -3.04 -0.02 1.79 16 13 C -0.12 -2.25 6.13 -24.87 -0.15 -2.41 16 14 C 0.25 5.97 0.88 -89.61 -0.08 5.89 16 15 O -0.58 -14.77 13.17 -35.23 -0.46 -15.23 16 16 C -0.54 -13.97 8.25 -34.44 -0.28 -14.26 16 17 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 18 C 0.07 1.85 5.27 -17.82 -0.09 1.76 16 19 N -0.89 -23.86 10.70 55.43 0.59 -23.26 16 20 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.11 2.79 5.40 -2.52 -0.01 2.78 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.54 7.14 -51.93 -0.37 0.17 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.39 4.83 7.46 -40.82 -0.30 4.52 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.38 9.95 7.54 45.56 0.34 10.29 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.09 2.39 7.31 -51.93 -0.38 2.01 16 46 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -30.40 383.27 -10.18 -40.58 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -7.43 Total: 12.73 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -0.57 Total: 8.80 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.35 Total: -48.74 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.38 Total: -29.92 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.21 Total: -4.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.40 -10.18 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591996139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.359 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds