Wall clock time and date at job start Tue Mar 31 2020 10:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47336 * 120.00211 * 2 1 3 5 5 S 1.81398 * 109.46859 * 65.00016 * 4 2 1 6 6 C 1.81400 * 103.00089 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47492 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47267 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99751 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00304 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99610 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64903 * 359.95841 * 11 9 8 13 13 C 1.54371 * 107.28632 * 181.12818 * 12 11 9 14 14 C 1.55156 * 102.92059 * 22.13773 * 13 12 11 15 15 O 1.42894 * 111.00351 * 82.64238 * 14 13 12 16 16 C 1.50705 * 111.00016 * 206.45621 * 14 13 12 17 17 H 1.07993 * 120.00222 * 356.18276 * 16 14 13 18 18 C 1.37881 * 119.99392 * 175.91314 * 16 14 13 19 19 N 1.31509 * 120.00570 * 354.23595 * 18 16 14 20 20 Si 1.86802 * 119.99449 * 174.23797 * 18 16 14 21 21 H 1.48500 * 109.47140 * 94.98922 * 20 18 16 22 22 H 1.48506 * 109.47182 * 214.98446 * 20 18 16 23 23 H 1.48500 * 109.47323 * 334.98680 * 20 18 16 24 24 C 1.47424 * 125.64568 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.46745 * 59.99552 * 1 2 3 26 26 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47243 * 299.99664 * 1 2 3 28 28 H 1.09001 * 109.47243 * 240.00336 * 2 1 3 29 29 H 1.08994 * 109.47272 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47185 * 300.00656 * 3 2 1 31 31 H 1.09001 * 109.46727 * 60.00019 * 3 2 1 32 32 H 1.08996 * 109.46959 * 305.00029 * 4 2 1 33 33 H 1.08994 * 109.47110 * 184.99930 * 4 2 1 34 34 H 1.08995 * 109.47166 * 59.99792 * 6 5 4 35 35 H 1.09004 * 109.46847 * 299.99745 * 6 5 4 36 36 H 1.09004 * 109.47132 * 59.99450 * 7 6 5 37 37 H 1.09004 * 109.46822 * 300.00195 * 7 6 5 38 38 H 0.96999 * 119.99964 * 359.97438 * 8 7 6 39 39 H 1.08996 * 109.87865 * 300.51069 * 12 11 9 40 40 H 1.09004 * 109.88436 * 61.67611 * 12 11 9 41 41 H 1.09003 * 110.70184 * 263.79158 * 13 12 11 42 42 H 1.08998 * 110.75668 * 140.50398 * 13 12 11 43 43 H 0.96708 * 113.99643 * 183.17715 * 15 14 13 44 44 H 0.96997 * 120.00732 * 179.97438 * 19 18 16 45 45 H 1.08999 * 110.36723 * 36.99330 * 24 11 9 46 46 H 1.09001 * 110.45885 * 274.72191 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 1.5602 -2.4691 1.1764 6 6 2.2418 -3.1439 2.7161 7 6 1.9172 -4.6363 2.8067 8 7 2.4682 -5.1813 4.0498 9 6 2.3043 -6.4863 4.3445 10 8 1.6987 -7.2110 3.5788 11 7 2.8117 -6.9878 5.4880 12 6 3.5625 -6.2279 6.4981 13 6 3.9645 -7.2182 7.6120 14 6 3.9049 -8.5918 6.8930 15 8 5.1086 -8.8414 6.1646 16 6 3.6298 -9.7030 7.8733 17 1 3.5654 -9.4876 8.9296 18 6 3.4548 -10.9936 7.4209 19 7 3.4147 -11.2381 6.1293 20 14 3.2745 -12.3951 8.6427 21 1 1.8332 -12.6606 8.8823 22 1 3.9181 -13.6159 8.0943 23 1 3.9287 -12.0231 9.9229 24 6 2.7060 -8.3894 5.9328 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 1.8018 -2.6237 3.5669 35 1 3.3231 -3.0064 2.7257 36 1 2.3575 -5.1562 1.9558 37 1 0.8360 -4.7742 2.7968 38 1 2.9517 -4.6032 4.6605 39 1 4.4556 -5.7948 6.0479 40 1 2.9338 -5.4394 6.9118 41 1 3.2510 -7.1825 8.4353 42 1 4.9745 -7.0119 7.9662 43 1 5.0989 -9.6660 5.6595 44 1 3.2919 -12.1461 5.8111 45 1 2.7841 -9.0647 5.0808 46 1 1.7659 -8.5520 6.4598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591996139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:16 Heat of formation + Delta-G solvation = -116.525738 kcal Electronic energy + Delta-G solvation = -24083.169897 eV Core-core repulsion = 20518.526760 eV Total energy + Delta-G solvation = -3564.643136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26349 -39.18072 -37.07584 -36.38941 -36.05921 -34.22296 -32.35380 -31.00534 -29.47651 -28.42444 -28.01101 -26.97145 -24.65283 -23.64873 -21.46813 -21.23230 -21.03442 -19.29803 -18.84745 -17.48362 -17.25664 -17.08778 -16.90986 -16.30868 -16.17787 -15.91941 -15.70107 -15.28801 -14.95367 -14.73703 -14.65624 -14.46280 -13.83887 -13.68033 -13.57391 -13.35244 -13.26717 -13.10471 -12.88111 -12.82104 -12.67808 -12.49788 -12.31980 -12.23233 -12.08863 -12.01500 -11.86316 -11.68371 -11.35868 -11.16591 -10.86872 -10.68906 -10.35352 -10.24822 -9.34214 -8.67193 -8.23792 -6.41350 0.47568 1.41941 1.44720 1.54985 1.57559 1.80411 2.12183 2.38897 3.01454 3.12790 3.61978 3.78043 3.79873 3.85777 3.89108 4.09542 4.17672 4.19815 4.34216 4.35300 4.51390 4.62452 4.63095 4.67223 4.72093 4.77688 4.78642 4.82862 5.01078 5.04505 5.08865 5.11768 5.24293 5.29926 5.35859 5.41291 5.41737 5.42622 5.47034 5.76774 6.03832 6.16176 6.66173 7.03895 7.27542 7.33797 7.53845 8.80735 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.040871 B = 0.002071 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.914751 B =13518.158106 C =13840.462075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.070 4.070 5 S -0.283 6.283 6 C -0.086 4.086 7 C 0.160 3.840 8 N -0.726 5.726 9 C 0.710 3.290 10 O -0.645 6.645 11 N -0.633 5.633 12 C 0.106 3.894 13 C -0.110 4.110 14 C 0.231 3.769 15 O -0.586 6.586 16 C -0.557 4.557 17 H 0.071 0.929 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.129 3.871 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.372 0.628 44 H 0.269 0.731 45 H 0.042 0.958 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 25.421 -6.206 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.218 4.218 5 S -0.056 6.056 6 C -0.235 4.235 7 C 0.035 3.965 8 N -0.385 5.385 9 C 0.412 3.588 10 O -0.528 6.528 11 N -0.370 5.370 12 C -0.016 4.016 13 C -0.148 4.148 14 C 0.190 3.810 15 O -0.393 6.393 16 C -0.595 4.595 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.790 3.210 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.188 1.188 24 C 0.005 3.995 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.220 0.780 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.072 24.853 -7.455 26.030 hybrid contribution 0.414 -1.179 1.180 1.718 sum -1.659 23.675 -6.275 24.548 Atomic orbital electron populations 1.21901 0.94572 1.01892 1.02374 1.20907 0.96522 0.96634 0.95978 1.21813 1.01404 0.93868 1.02773 1.23595 1.04366 0.90982 1.02898 1.87232 1.76205 1.11818 1.30375 1.23375 1.05036 0.96276 0.98775 1.20675 0.98574 0.91727 0.85521 1.44807 1.61580 1.07283 1.24790 1.15720 0.79629 0.82681 0.80803 1.90860 1.49914 1.60271 1.51722 1.47889 1.57076 1.12054 1.19955 1.22155 0.95837 0.94762 0.88825 1.22605 1.02659 0.92608 0.96910 1.19878 0.80572 0.92939 0.87566 1.86088 1.40267 1.45784 1.67195 1.21814 1.50294 0.93030 0.94343 0.91113 1.25854 0.93217 1.01576 0.96982 1.69895 1.49461 1.21893 1.14156 0.85447 0.78045 0.78277 0.79266 1.20442 1.20964 1.18797 1.22687 0.99709 0.79291 0.97795 0.91899 0.93097 0.92051 0.91118 0.91986 0.91580 0.91870 0.88937 0.88979 0.87488 0.87838 0.92762 0.92303 0.75155 0.90698 0.88966 0.89230 0.89466 0.77960 0.92212 0.93952 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.02 71.98 0.65 -1.15 16 2 C -0.08 -0.89 2.92 -10.79 -0.03 -0.93 16 3 C -0.14 -1.06 9.19 71.98 0.66 -0.40 16 4 C -0.07 -0.82 5.38 71.98 0.39 -0.44 16 5 S -0.28 -5.21 20.55 -56.49 -1.16 -6.38 16 6 C -0.09 -1.44 6.05 71.98 0.44 -1.00 16 7 C 0.16 4.14 5.68 86.38 0.49 4.63 16 8 N -0.73 -20.78 5.52 -478.53 -2.64 -23.42 16 9 C 0.71 29.40 8.49 179.05 1.52 30.92 16 10 O -0.65 -33.29 16.60 -3.98 -0.07 -33.35 16 11 N -0.63 -26.14 3.33 -829.62 -2.76 -28.90 16 12 C 0.11 3.32 6.15 86.75 0.53 3.85 16 13 C -0.11 -4.03 6.13 31.80 0.19 -3.84 16 14 C 0.23 11.13 0.88 -10.14 -0.01 11.12 16 15 O -0.59 -29.99 13.17 -148.98 -1.96 -31.96 16 16 C -0.56 -28.85 8.25 25.60 0.21 -28.64 16 17 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 18 C 0.02 1.30 5.27 84.66 0.45 1.74 16 19 N -0.92 -50.63 10.70 21.45 0.23 -50.40 16 20 Si 0.96 41.90 29.54 68.60 2.03 43.92 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 C 0.13 6.46 5.40 86.86 0.47 6.93 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.79 7.14 -2.39 -0.02 0.77 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 8.67 7.46 -92.71 -0.69 7.98 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 42 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 43 H 0.37 20.14 7.54 -74.05 -0.56 19.58 16 44 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.04 2.47 7.31 -2.39 -0.02 2.45 16 46 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -68.91 383.27 -0.66 -69.57 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.29 Total: 38.11 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 5.96 Total: 22.81 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -5.17 Total: -102.72 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -2.03 Total: -65.31 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.16 Total: -6.38 kcal Total: -68.91 -0.66 -69.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591996139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.953 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds