Wall clock time and date at job start Tue Mar 31 2020 11:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.50696 * 120.00064 * 2 1 4 4 N 1.46493 * 109.47444 * 95.00267 * 3 2 1 5 5 C 1.34780 * 120.00213 * 179.97438 * 4 3 2 6 6 O 1.21587 * 119.99695 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00322 * 179.97438 * 5 4 3 8 8 C 1.47025 * 125.64651 * 359.69315 * 7 5 4 9 9 C 1.54332 * 107.26304 * 178.84983 * 8 7 5 10 10 C 1.55154 * 103.02477 * 338.13906 * 9 8 7 11 11 O 1.42908 * 111.00554 * 277.23743 * 10 9 8 12 12 C 1.50693 * 111.03913 * 153.39971 * 10 9 8 13 13 H 1.07992 * 120.00193 * 6.32644 * 12 10 9 14 14 C 1.37879 * 119.99824 * 186.33700 * 12 10 9 15 15 N 1.31513 * 120.00209 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99776 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47304 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47067 * 119.99905 * 16 14 12 19 19 H 1.48507 * 109.46961 * 239.99218 * 16 14 12 20 20 C 1.47419 * 125.64965 * 180.02562 * 7 5 4 21 21 C 1.47810 * 119.99639 * 179.97438 * 2 1 3 22 22 C 1.39538 * 120.14215 * 244.72527 * 21 2 1 23 23 C 1.37977 * 119.85875 * 179.72183 * 22 21 2 24 24 C 1.38342 * 120.13474 * 0.53292 * 23 22 21 25 25 C 1.38343 * 120.28976 * 359.76521 * 24 23 22 26 26 C 1.37965 * 120.14464 * 359.95670 * 25 24 23 27 27 H 1.08002 * 120.00489 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99743 * 359.72773 * 1 2 3 29 29 H 1.09007 * 109.46949 * 214.99964 * 3 2 1 30 30 H 1.09001 * 109.47152 * 334.99407 * 3 2 1 31 31 H 0.96995 * 120.00105 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.88020 * 298.39228 * 8 7 5 33 33 H 1.09003 * 109.87861 * 59.55888 * 8 7 5 34 34 H 1.09008 * 110.84714 * 219.67378 * 9 8 7 35 35 H 1.08997 * 110.51839 * 96.45415 * 9 8 7 36 36 H 0.96700 * 113.99620 * 173.64347 * 11 10 9 37 37 H 0.97000 * 119.99910 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.36864 * 322.93075 * 20 7 5 39 39 H 1.08998 * 110.37197 * 85.14612 * 20 7 5 40 40 H 1.08006 * 120.07057 * 359.97438 * 22 21 2 41 41 H 1.07994 * 119.93107 * 180.27672 * 23 22 21 42 42 H 1.08010 * 119.85117 * 179.74200 * 24 23 22 43 43 H 1.08000 * 119.92787 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.07558 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 7 2.4277 1.6678 1.3759 5 6 3.1093 2.8044 1.6211 6 8 3.4353 3.5284 0.7004 7 7 3.4294 3.1384 2.8870 8 6 3.0937 2.3615 4.0892 9 6 3.6866 3.1123 5.3001 10 6 4.8029 3.9801 4.6611 11 8 6.0014 3.2226 4.4824 12 6 5.0655 5.2151 5.4836 13 1 4.5765 5.3424 6.4380 14 6 5.9302 6.1827 5.0175 15 7 6.5260 6.0276 3.8555 16 14 6.2552 7.7141 6.0368 17 1 5.4678 7.6482 7.2941 18 1 7.7019 7.7944 6.3619 19 1 5.8540 8.9172 5.2643 20 6 4.1683 4.3466 3.2961 21 6 2.0646 -1.2801 0.0006 22 6 2.8611 -1.6289 1.0919 23 6 3.5439 -2.8279 1.0888 24 6 3.4486 -3.6785 0.0019 25 6 2.6656 -3.3358 -1.0859 26 6 1.9733 -2.1424 -1.0927 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 2.9899 1.1988 -0.5895 30 1 1.4543 2.0854 -0.4344 31 1 2.1679 1.0900 2.1104 32 1 2.0111 2.2858 4.1912 33 1 3.5323 1.3659 4.0215 34 1 4.1079 2.4126 6.0221 35 1 2.9293 3.7414 5.7678 36 1 6.6949 3.6921 3.9989 37 1 7.1346 6.7082 3.5278 38 1 4.9446 4.5814 2.5677 39 1 3.4860 5.1893 3.4070 40 1 2.9398 -0.9635 1.9391 41 1 4.1571 -3.1010 1.9347 42 1 3.9884 -4.6141 0.0025 43 1 2.5958 -4.0040 -1.9314 44 1 1.3620 -1.8761 -1.9423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592021773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:40 Heat of formation + Delta-G solvation = -32.073889 kcal Electronic energy + Delta-G solvation = -26110.708252 eV Core-core repulsion = 22414.283272 eV Total energy + Delta-G solvation = -3696.424981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82397 -39.25398 -37.45182 -35.82254 -34.19837 -32.99681 -32.20681 -31.08639 -30.19562 -29.69304 -27.80946 -26.35324 -24.60682 -23.15440 -22.64334 -22.41608 -19.73573 -19.64119 -19.15978 -17.62454 -17.02832 -16.81026 -15.90486 -15.55101 -15.19581 -15.11544 -14.93778 -14.48627 -14.40772 -14.17598 -13.61176 -13.59455 -13.33794 -13.01378 -12.78426 -12.64827 -12.40520 -12.12719 -11.84578 -11.62973 -11.40565 -11.30285 -11.03846 -11.02787 -10.80037 -10.58316 -10.44813 -10.16933 -9.99082 -9.49527 -9.33870 -9.12401 -8.82290 -8.74670 -8.67829 -8.32738 -7.66010 -6.25345 -4.35133 0.99140 1.23082 1.80490 3.20638 3.29496 3.31961 3.34358 3.58970 3.77992 4.27775 4.41934 4.54209 4.67470 4.78592 4.80660 4.94395 5.01783 5.26764 5.35443 5.42234 5.45380 5.50616 5.65902 5.69763 5.77795 5.80586 5.85436 6.02355 6.09892 6.13618 6.27290 6.33261 6.36352 6.48582 6.52704 6.72132 6.77163 6.80094 6.90835 6.99490 7.25980 7.35325 7.67380 7.76771 8.05905 8.56212 8.69614 9.16174 9.32405 9.40578 10.81628 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.002871 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.516758 B = 9749.856644 C =10171.554507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.181 3.819 4 N -0.748 5.748 5 C 0.716 3.284 6 O -0.596 6.596 7 N -0.628 5.628 8 C 0.105 3.895 9 C -0.115 4.115 10 C 0.248 3.752 11 O -0.583 6.583 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.891 5.891 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.114 3.886 21 C -0.050 4.050 22 C -0.101 4.101 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.108 4.108 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.381 0.619 37 H 0.269 0.731 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 -16.767 -6.407 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 C 0.057 3.943 4 N -0.405 5.405 5 C 0.418 3.582 6 O -0.475 6.475 7 N -0.365 5.365 8 C -0.018 4.018 9 C -0.153 4.153 10 C 0.207 3.793 11 O -0.391 6.391 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.133 4.133 15 N -0.530 5.530 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.008 4.008 21 C -0.050 4.050 22 C -0.119 4.119 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.126 4.126 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.226 0.774 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.597 -16.581 -6.970 20.876 hybrid contribution 0.405 0.955 0.477 1.142 sum -10.192 -15.626 -6.492 19.754 Atomic orbital electron populations 1.24334 0.94456 1.02549 0.97045 1.20598 0.94515 0.92832 1.02856 1.20000 0.98923 0.91804 0.83540 1.45157 1.62280 1.24734 1.08315 1.15521 0.78926 0.81200 0.82557 1.90888 1.60518 1.53247 1.42882 1.47926 1.58869 1.26501 1.03163 1.21923 0.97947 0.95348 0.86599 1.22585 0.98285 0.98895 0.95574 1.19640 0.82032 0.88326 0.89255 1.86100 1.26782 1.46160 1.80068 1.21483 1.27429 1.03127 1.05499 0.91516 1.25087 0.94856 0.98494 0.94841 1.69732 1.29169 1.35644 1.18408 0.86360 0.78154 0.82249 0.80190 1.19616 1.20780 1.20800 1.23133 0.94609 0.83681 0.99389 1.18916 0.97748 0.93669 0.94682 1.21278 0.96025 0.96631 0.97986 1.21136 0.99341 0.94379 0.98672 1.21216 0.99082 0.99728 0.93931 1.21070 0.97571 0.96848 0.98490 1.21250 0.99762 0.94044 0.97589 0.87779 0.87262 0.91200 0.90960 0.77438 0.93195 0.92804 0.90810 0.90452 0.76923 0.92068 0.89659 0.92528 0.86025 0.85804 0.86156 0.86050 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 13.94 28.82 0.40 -0.85 16 2 C -0.11 -1.13 4.81 -102.62 -0.49 -1.62 16 3 C 0.18 2.45 5.81 -5.20 -0.03 2.41 16 4 N -0.75 -11.51 5.51 -66.42 -0.37 -11.88 16 5 C 0.72 14.79 8.49 -86.92 -0.74 14.05 16 6 O -0.60 -14.71 16.60 5.29 0.09 -14.63 16 7 N -0.63 -13.11 3.33 -176.22 -0.59 -13.70 16 8 C 0.11 1.83 6.15 -3.06 -0.02 1.81 16 9 C -0.12 -2.26 6.13 -24.89 -0.15 -2.42 16 10 C 0.25 5.98 0.87 -89.61 -0.08 5.91 16 11 O -0.58 -14.83 13.16 -35.23 -0.46 -15.29 16 12 C -0.54 -13.94 8.27 -34.44 -0.28 -14.22 16 13 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 14 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 15 N -0.89 -23.92 10.69 55.43 0.59 -23.33 16 16 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.11 2.77 5.38 -2.52 -0.01 2.76 16 21 C -0.05 -0.54 5.32 -105.01 -0.56 -1.10 16 22 C -0.10 -1.12 9.77 -39.19 -0.38 -1.51 16 23 C -0.12 -1.18 10.03 -39.64 -0.40 -1.57 16 24 C -0.12 -1.10 10.04 -39.50 -0.40 -1.50 16 25 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 26 C -0.11 -1.04 9.71 -39.20 -0.38 -1.42 16 27 H 0.10 0.76 8.05 -52.49 -0.42 0.34 16 28 H 0.11 0.87 8.02 -52.48 -0.42 0.45 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 30 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 31 H 0.39 5.18 6.70 -40.82 -0.27 4.90 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 35 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 36 H 0.38 10.01 7.56 45.56 0.34 10.36 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 39 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 40 H 0.12 1.34 7.30 -52.48 -0.38 0.96 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -30.80 370.11 -9.91 -40.70 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -5.71 Total: 16.15 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -4.02 Total: 1.02 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.36 Total: -48.91 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.38 Total: -29.92 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.80 -9.91 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592021773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.629 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds