Wall clock time and date at job start Tue Mar 31 2020 10:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 H 1.08993 * 109.47294 * 304.99953 * 3 2 1 5 5 N 1.46503 * 109.46869 * 65.00207 * 3 2 1 6 6 C 1.34776 * 119.99889 * 257.74379 * 5 3 2 7 7 O 1.21354 * 119.99939 * 0.02562 * 6 5 3 8 8 C 1.49353 * 119.99843 * 180.02562 * 6 5 3 9 9 O 1.21376 * 120.00161 * 0.02562 * 8 6 5 10 10 N 1.34776 * 119.99936 * 180.02562 * 8 6 5 11 11 C 1.39744 * 120.00180 * 185.06753 * 10 8 6 12 12 C 1.39345 * 119.95623 * 145.23663 * 11 10 8 13 13 C 1.38467 * 120.42111 * 180.02562 * 12 11 10 14 14 C 1.37692 * 120.33373 * 359.96028 * 13 12 11 15 15 C 1.40753 * 119.89223 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20331 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99504 * 207.44137 * 16 15 14 18 18 C 1.39932 * 120.00358 * 27.44616 * 16 15 14 19 19 N 1.30832 * 119.99844 * 14.30290 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 194.30631 * 18 16 15 21 21 H 1.48508 * 109.46988 * 59.99770 * 20 18 16 22 22 H 1.48494 * 109.47174 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47161 * 299.99965 * 20 18 16 24 24 C 1.38310 * 119.95000 * 324.96156 * 11 10 8 25 25 C 1.53001 * 109.46674 * 184.99994 * 3 2 1 26 26 C 1.53003 * 117.49655 * 132.92433 * 25 3 2 27 27 C 1.52997 * 117.49967 * 64.26666 * 25 3 2 28 28 H 1.08997 * 109.47108 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46744 * 59.99722 * 1 2 3 31 31 H 1.09000 * 109.46744 * 120.00278 * 2 1 3 32 32 H 1.08997 * 109.47108 * 240.00055 * 2 1 3 33 33 H 0.96999 * 119.99669 * 77.74970 * 5 3 2 34 34 H 0.97003 * 119.99871 * 5.05759 * 10 8 6 35 35 H 1.07996 * 119.78689 * 359.97438 * 12 11 10 36 36 H 1.08005 * 119.82798 * 179.97438 * 13 12 11 37 37 H 1.07995 * 120.05525 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.99936 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.15940 * 359.97438 * 24 11 10 40 40 H 1.09004 * 115.54982 * 278.58713 * 25 3 2 41 41 H 1.08996 * 117.49908 * 359.97438 * 26 25 3 42 42 H 1.09001 * 117.49992 * 145.02116 * 26 25 3 43 43 H 1.09002 * 117.49435 * 214.97379 * 27 25 3 44 44 H 1.08996 * 117.49622 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.6103 2.9519 1.2708 7 8 -0.0073 3.1783 0.2510 8 6 0.2156 3.6200 2.5470 9 8 0.8336 3.3938 3.5668 10 7 -0.8269 4.4740 2.5660 11 6 -1.1309 5.1795 3.7334 12 6 -1.6284 6.4786 3.6516 13 6 -1.9324 7.1866 4.8021 14 6 -1.7469 6.6140 6.0405 15 6 -1.2453 5.3026 6.1389 16 6 -1.0518 4.7083 7.4074 17 1 -0.2995 3.9442 7.5365 18 6 -1.8348 5.1102 8.4952 19 7 -2.9181 5.8162 8.2960 20 14 -1.3335 4.6386 10.2318 21 1 0.0089 5.1999 10.5292 22 1 -2.3219 5.1825 11.1973 23 1 -1.2884 3.1589 10.3494 24 6 -0.9428 4.5853 4.9681 25 6 3.5649 1.4442 -0.1257 26 6 4.1884 2.3978 -1.1470 27 6 4.1677 0.8916 -1.4188 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.1460 1.9161 2.0670 34 1 -1.3661 4.5990 1.7694 35 1 -1.7771 6.9363 2.6848 36 1 -2.3171 8.1931 4.7276 37 1 -1.9858 7.1702 6.9348 38 1 -3.4611 6.0945 9.0501 39 1 -0.5619 3.5769 5.0325 40 1 4.1131 1.2697 0.8001 41 1 3.5123 3.0235 -1.7295 42 1 5.1471 2.8502 -0.8932 43 1 5.1128 0.3537 -1.3436 44 1 3.4780 0.5264 -2.1796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595173253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:05 Heat of formation + Delta-G solvation = -31.881990 kcal Electronic energy + Delta-G solvation = -25642.059146 eV Core-core repulsion = 21945.642487 eV Total energy + Delta-G solvation = -3696.416659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71692 -39.19996 -37.88108 -37.10183 -35.16676 -34.43335 -33.05767 -32.33070 -29.85554 -28.60619 -27.38888 -25.34126 -24.32968 -22.91191 -22.04002 -21.31064 -20.83116 -20.79444 -19.66373 -18.31258 -17.49192 -16.98869 -16.19295 -15.71915 -15.50360 -15.10698 -14.88978 -14.69749 -14.62343 -14.33031 -13.91406 -13.51979 -13.14140 -12.93558 -12.90132 -12.67753 -12.23432 -11.87548 -11.76547 -11.71986 -11.50431 -11.34645 -11.24768 -11.12669 -11.05985 -10.89486 -10.79326 -10.50626 -10.41239 -10.11814 -9.70704 -9.41449 -9.27799 -9.10430 -8.95292 -7.47424 -7.00904 -6.71588 -4.36581 1.54294 2.46550 2.77119 2.93245 3.08458 3.11968 3.20432 3.42991 3.55400 3.89321 3.96429 4.23039 4.54132 4.62778 4.64724 4.72957 4.81861 4.94780 4.97140 5.17707 5.31158 5.46800 5.56353 5.62946 5.66463 5.74579 5.77722 5.81418 5.90715 6.14681 6.21133 6.24954 6.36031 6.59558 6.84192 6.99447 7.02841 7.12781 7.23911 7.45636 7.66026 7.82470 7.90116 8.06143 8.09157 8.16422 8.46050 8.64650 8.90865 8.94495 10.22539 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002764 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.897436 B =10129.185765 C =10725.419981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.169 3.831 4 H 0.100 0.900 5 N -0.694 5.694 6 C 0.515 3.485 7 O -0.524 6.524 8 C 0.495 3.505 9 O -0.499 6.499 10 N -0.632 5.632 11 C 0.140 3.860 12 C -0.253 4.253 13 C -0.093 4.093 14 C -0.165 4.165 15 C 0.118 3.882 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.910 3.090 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.206 4.206 25 C -0.167 4.167 26 C -0.176 4.176 27 C -0.169 4.169 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.280 0.720 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -8.514 -14.838 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.065 3.935 4 H 0.118 0.882 5 N -0.347 5.347 6 C 0.296 3.704 7 O -0.400 6.400 8 C 0.275 3.725 9 O -0.373 6.373 10 N -0.277 5.277 11 C 0.048 3.952 12 C -0.274 4.274 13 C -0.112 4.112 14 C -0.185 4.185 15 C 0.115 3.885 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.227 4.227 25 C -0.186 4.186 26 C -0.213 4.213 27 C -0.207 4.207 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.939 -8.420 -14.733 19.179 hybrid contribution 0.085 -0.177 0.789 0.813 sum 9.024 -8.597 -13.943 18.702 Atomic orbital electron populations 1.21742 0.95124 1.01449 1.02489 1.21892 0.96673 0.95526 1.02809 1.20712 0.91714 0.93582 0.87515 0.88167 1.45714 1.32109 1.44009 1.12901 1.20287 0.81081 0.79726 0.89307 1.90725 1.52583 1.62280 1.34396 1.19993 0.82011 0.81688 0.88780 1.90804 1.52671 1.60447 1.33426 1.43100 1.29007 1.40723 1.14878 1.17488 1.02070 0.91244 0.84367 1.20090 1.15854 0.94101 0.97364 1.20479 1.00149 0.97799 0.92784 1.21388 1.05378 0.95682 0.96039 1.17505 0.88260 0.90734 0.91967 1.19536 1.17171 1.19497 0.92681 0.90358 1.25894 0.93534 0.93390 1.01415 1.69802 1.10278 1.28745 1.33594 0.86334 0.79443 0.79835 0.80895 1.18834 1.20383 1.19022 1.21173 1.11224 0.99999 0.90318 1.22535 0.94673 1.06184 0.95224 1.23061 1.02792 0.92809 1.02605 1.22942 1.02591 0.96703 0.98416 0.92830 0.92696 0.92337 0.91368 0.90648 0.75048 0.75383 0.88978 0.88806 0.86246 0.90872 0.86893 0.87153 0.88534 0.88585 0.88473 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.47 37.16 0.35 -1.17 16 2 C -0.13 -1.11 5.55 -26.73 -0.15 -1.26 16 3 C 0.17 1.62 2.44 -67.93 -0.17 1.46 16 4 H 0.10 1.10 6.89 -51.93 -0.36 0.74 16 5 N -0.69 -8.19 4.60 -54.27 -0.25 -8.44 16 6 C 0.51 7.69 6.80 -11.63 -0.08 7.61 16 7 O -0.52 -8.36 15.75 5.49 0.09 -8.27 16 8 C 0.49 8.99 7.73 -11.63 -0.09 8.90 16 9 O -0.50 -10.36 13.88 5.47 0.08 -10.29 16 10 N -0.63 -11.93 5.32 -10.34 -0.05 -11.99 16 11 C 0.14 3.18 6.29 -83.81 -0.53 2.65 16 12 C -0.25 -5.58 9.97 -39.09 -0.39 -5.97 16 13 C -0.09 -2.16 10.01 -39.70 -0.40 -2.55 16 14 C -0.17 -4.29 8.67 -38.83 -0.34 -4.63 16 15 C 0.12 3.21 5.55 -106.85 -0.59 2.62 16 16 C -0.46 -12.43 9.05 -37.74 -0.34 -12.77 16 17 H 0.08 2.07 7.89 -52.49 -0.41 1.66 16 18 C 0.07 1.89 5.19 -17.34 -0.09 1.80 16 19 N -0.80 -20.69 10.95 55.55 0.61 -20.08 16 20 Si 0.91 18.93 29.58 -169.99 -5.03 13.91 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.21 -5.26 8.44 -38.67 -0.33 -5.59 16 25 C -0.17 -1.32 5.37 -90.62 -0.49 -1.81 16 26 C -0.18 -1.35 10.18 -26.69 -0.27 -1.62 16 27 C -0.17 -1.09 9.73 -26.70 -0.26 -1.35 16 28 H 0.05 0.65 6.99 -51.93 -0.36 0.29 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.52 7.43 -51.93 -0.39 0.14 16 33 H 0.41 4.60 8.25 -40.82 -0.34 4.26 16 34 H 0.41 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.12 3.18 6.24 -52.49 -0.33 2.85 16 38 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 39 H 0.11 2.93 6.19 -52.49 -0.32 2.61 16 40 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.57 7.86 -51.93 -0.41 0.16 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -29.50 369.23 -9.34 -38.84 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -6.19 Total: 14.43 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -4.15 Total: -13.68 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.30 Total: -40.51 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.55 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.50 -9.34 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595173253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.962 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds