Wall clock time and date at job start Tue Mar 31 2020 10:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 H 1.08993 * 109.47294 * 304.99953 * 3 2 1 5 5 N 1.46503 * 109.46869 * 65.00207 * 3 2 1 6 6 C 1.34776 * 119.99889 * 257.74379 * 5 3 2 7 7 O 1.21354 * 119.99939 * 0.02562 * 6 5 3 8 8 C 1.49353 * 119.99843 * 180.02562 * 6 5 3 9 9 O 1.21376 * 120.00161 * 0.02562 * 8 6 5 10 10 N 1.34776 * 119.99936 * 180.02562 * 8 6 5 11 11 C 1.39744 * 120.00180 * 185.06753 * 10 8 6 12 12 C 1.39345 * 119.95623 * 145.23663 * 11 10 8 13 13 C 1.38467 * 120.42111 * 180.02562 * 12 11 10 14 14 C 1.37692 * 120.33373 * 359.96028 * 13 12 11 15 15 C 1.40753 * 119.89223 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20331 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99504 * 207.44137 * 16 15 14 18 18 C 1.39932 * 120.00358 * 27.44616 * 16 15 14 19 19 N 1.30832 * 119.99844 * 14.30290 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 194.30631 * 18 16 15 21 21 H 1.48508 * 109.46988 * 59.99770 * 20 18 16 22 22 H 1.48494 * 109.47174 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47161 * 299.99965 * 20 18 16 24 24 C 1.38310 * 119.95000 * 324.96156 * 11 10 8 25 25 C 1.53001 * 109.46674 * 184.99994 * 3 2 1 26 26 C 1.53003 * 117.49655 * 132.92433 * 25 3 2 27 27 C 1.52997 * 117.49967 * 64.26666 * 25 3 2 28 28 H 1.08997 * 109.47108 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46744 * 59.99722 * 1 2 3 31 31 H 1.09000 * 109.46744 * 120.00278 * 2 1 3 32 32 H 1.08997 * 109.47108 * 240.00055 * 2 1 3 33 33 H 0.96999 * 119.99669 * 77.74970 * 5 3 2 34 34 H 0.97003 * 119.99871 * 5.05759 * 10 8 6 35 35 H 1.07996 * 119.78689 * 359.97438 * 12 11 10 36 36 H 1.08005 * 119.82798 * 179.97438 * 13 12 11 37 37 H 1.07995 * 120.05525 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.99936 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.15940 * 359.97438 * 24 11 10 40 40 H 1.09004 * 115.54982 * 278.58713 * 25 3 2 41 41 H 1.08996 * 117.49908 * 359.97438 * 26 25 3 42 42 H 1.09001 * 117.49992 * 145.02116 * 26 25 3 43 43 H 1.09002 * 117.49435 * 214.97379 * 27 25 3 44 44 H 1.08996 * 117.49622 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.6103 2.9519 1.2708 7 8 -0.0073 3.1783 0.2510 8 6 0.2156 3.6200 2.5470 9 8 0.8336 3.3938 3.5668 10 7 -0.8269 4.4740 2.5660 11 6 -1.1309 5.1795 3.7334 12 6 -1.6284 6.4786 3.6516 13 6 -1.9324 7.1866 4.8021 14 6 -1.7469 6.6140 6.0405 15 6 -1.2453 5.3026 6.1389 16 6 -1.0518 4.7083 7.4074 17 1 -0.2995 3.9442 7.5365 18 6 -1.8348 5.1102 8.4952 19 7 -2.9181 5.8162 8.2960 20 14 -1.3335 4.6386 10.2318 21 1 0.0089 5.1999 10.5292 22 1 -2.3219 5.1825 11.1973 23 1 -1.2884 3.1589 10.3494 24 6 -0.9428 4.5853 4.9681 25 6 3.5649 1.4442 -0.1257 26 6 4.1884 2.3978 -1.1470 27 6 4.1677 0.8916 -1.4188 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.1460 1.9161 2.0670 34 1 -1.3661 4.5990 1.7694 35 1 -1.7771 6.9363 2.6848 36 1 -2.3171 8.1931 4.7276 37 1 -1.9858 7.1702 6.9348 38 1 -3.4611 6.0945 9.0501 39 1 -0.5619 3.5769 5.0325 40 1 4.1131 1.2697 0.8001 41 1 3.5123 3.0235 -1.7295 42 1 5.1471 2.8502 -0.8932 43 1 5.1128 0.3537 -1.3436 44 1 3.4780 0.5264 -2.1796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595173253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:05 Heat of formation + Delta-G solvation = -49.203661 kcal Electronic energy + Delta-G solvation = -25642.810270 eV Core-core repulsion = 21945.642487 eV Total energy + Delta-G solvation = -3697.167783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05568 -40.50072 -39.03701 -38.62676 -36.50418 -35.72709 -34.82956 -33.26618 -31.77969 -30.34300 -28.35996 -27.28081 -25.66999 -23.58925 -23.02494 -22.72643 -22.50929 -21.66848 -21.08554 -19.83476 -19.05108 -18.14169 -17.39983 -17.32486 -17.03417 -16.58191 -16.45701 -15.99094 -15.56884 -15.30680 -15.20970 -14.93260 -14.69146 -14.47856 -14.02132 -13.81915 -13.55987 -13.44112 -13.09529 -13.01627 -12.86475 -12.67893 -12.54239 -12.40635 -12.20292 -12.09846 -11.94692 -11.75395 -11.55295 -11.39756 -11.17865 -11.06033 -10.92078 -10.55161 -10.23293 -9.41281 -8.85985 -8.61169 -6.38469 0.14276 0.94476 1.02508 1.29779 1.37798 1.49111 1.52688 2.10969 2.21606 2.55982 2.73474 2.90571 3.36199 3.54880 3.69909 3.91747 4.08675 4.09637 4.25297 4.29910 4.41871 4.44030 4.58667 4.70550 4.80762 4.88334 4.89804 4.96218 5.02606 5.06680 5.09100 5.10040 5.11023 5.14346 5.27335 5.28719 5.34816 5.38904 5.60658 5.77751 5.98562 6.03598 6.08971 6.27539 6.38334 6.64024 6.74838 6.88518 6.96073 7.00715 8.34777 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002764 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.897436 B =10129.185765 C =10725.419981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.169 3.831 4 H 0.089 0.911 5 N -0.679 5.679 6 C 0.525 3.475 7 O -0.534 6.534 8 C 0.493 3.507 9 O -0.527 6.527 10 N -0.629 5.629 11 C 0.146 3.854 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.190 4.190 15 C 0.089 3.911 16 C -0.500 4.500 17 H 0.068 0.932 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.230 4.230 25 C -0.175 4.175 26 C -0.187 4.187 27 C -0.150 4.150 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.417 0.583 34 H 0.424 0.576 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.289 0.711 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.983 -9.138 -16.204 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.066 3.934 4 H 0.107 0.893 5 N -0.331 5.331 6 C 0.305 3.695 7 O -0.411 6.411 8 C 0.275 3.725 9 O -0.403 6.403 10 N -0.275 5.275 11 C 0.053 3.947 12 C -0.266 4.266 13 C -0.109 4.109 14 C -0.210 4.210 15 C 0.086 3.914 16 C -0.530 4.530 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.452 5.452 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.251 4.251 25 C -0.194 4.194 26 C -0.224 4.224 27 C -0.187 4.187 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.254 0.746 34 H 0.263 0.737 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.804 -9.062 -16.149 20.953 hybrid contribution -0.161 0.006 1.045 1.057 sum 9.643 -9.056 -15.104 20.078 Atomic orbital electron populations 1.21744 0.96424 1.01813 1.00862 1.21889 0.95377 0.94774 1.04288 1.20892 0.93090 0.93845 0.85622 0.89340 1.45773 1.30613 1.42598 1.14147 1.19605 0.82015 0.80347 0.87571 1.90727 1.53286 1.63079 1.34024 1.20645 0.81221 0.80917 0.89731 1.90793 1.53434 1.61154 1.34945 1.43021 1.29611 1.40660 1.14194 1.17556 1.00639 0.91762 0.84733 1.20498 1.13876 0.93486 0.98706 1.20835 0.98940 0.99166 0.92002 1.21365 1.07162 0.95540 0.96901 1.17840 0.89176 0.91654 0.92687 1.19728 1.18386 1.20736 0.94148 0.91416 1.26707 0.92979 0.93001 1.05146 1.69842 1.10893 1.29270 1.35171 0.85250 0.79285 0.79541 0.75592 1.18548 1.18720 1.18685 1.21144 1.12829 0.99677 0.91460 1.22483 0.93233 1.07422 0.96258 1.23113 1.02853 0.93756 1.02689 1.23045 1.03067 0.95602 0.97024 0.95374 0.91394 0.92977 0.90709 0.88252 0.74581 0.73745 0.85227 0.85663 0.87619 0.90030 0.88442 0.86602 0.89353 0.88126 0.86969 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.47 71.98 0.68 -2.20 16 2 C -0.13 -1.86 5.55 30.60 0.17 -1.69 16 3 C 0.17 2.98 2.44 44.99 0.11 3.09 16 4 H 0.09 1.83 6.89 -2.39 -0.02 1.81 16 5 N -0.68 -15.52 4.60 -443.97 -2.04 -17.56 16 6 C 0.52 15.45 6.80 87.24 0.59 16.04 16 7 O -0.53 -16.62 15.75 -3.26 -0.05 -16.67 16 8 C 0.49 18.02 7.73 87.24 0.67 18.70 16 9 O -0.53 -22.49 13.88 -3.33 -0.05 -22.54 16 10 N -0.63 -23.50 5.32 -304.97 -1.62 -25.12 16 11 C 0.15 6.63 6.29 38.16 0.24 6.87 16 12 C -0.24 -10.42 9.97 22.59 0.23 -10.20 16 13 C -0.09 -4.13 10.01 22.20 0.22 -3.90 16 14 C -0.19 -10.11 8.67 22.76 0.20 -9.91 16 15 C 0.09 5.05 5.55 -21.31 -0.12 4.94 16 16 C -0.50 -28.41 9.05 23.46 0.21 -28.20 16 17 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 18 C 0.04 1.88 5.19 85.25 0.44 2.32 16 19 N -0.83 -43.78 10.95 21.82 0.24 -43.54 16 20 Si 0.98 39.43 29.58 68.60 2.03 41.46 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 C -0.23 -12.19 8.44 22.86 0.19 -12.00 16 25 C -0.18 -2.40 5.37 -10.79 -0.06 -2.46 16 26 C -0.19 -2.54 10.18 30.62 0.31 -2.23 16 27 C -0.15 -1.49 9.73 30.62 0.30 -1.20 16 28 H 0.03 0.67 6.99 -2.39 -0.02 0.65 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.05 7.43 -2.39 -0.02 1.03 16 33 H 0.42 9.05 8.25 -92.71 -0.76 8.28 16 34 H 0.42 13.39 8.30 -92.71 -0.77 12.62 16 35 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 37 H 0.11 5.82 6.24 -2.91 -0.02 5.81 16 38 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 39 H 0.10 5.36 6.19 -2.91 -0.02 5.34 16 40 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 0.90 7.86 -2.39 -0.02 0.88 16 Total: -1.00 -66.10 369.23 2.41 -63.70 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.49 Total: 42.30 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.40 Total: -22.03 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -3.43 Total: -86.22 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.20 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -66.10 2.41 -63.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595173253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.493 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds