Wall clock time and date at job start Tue Mar 31 2020 11:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47448 * 2 1 4 4 N 1.46897 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.48535 * 111.00044 * 287.39766 * 4 3 2 6 6 C 1.54934 * 103.22602 * 200.27959 * 5 4 3 7 7 C 1.54600 * 102.92200 * 37.41250 * 6 5 4 8 8 H 1.08997 * 110.38795 * 97.00347 * 7 6 5 9 9 N 1.46499 * 110.30858 * 219.12439 * 7 6 5 10 10 S 1.65596 * 120.00301 * 260.99509 * 9 7 6 11 11 O 1.42104 * 104.28118 * 180.79877 * 10 9 7 12 12 O 1.42106 * 104.27750 * 308.65380 * 10 9 7 13 13 C 1.81394 * 104.45161 * 64.72147 * 10 9 7 14 14 C 1.52999 * 109.47280 * 174.02807 * 13 10 9 15 15 C 1.50703 * 115.54731 * 39.94744 * 14 13 10 16 16 H 1.07996 * 120.00007 * 264.80687 * 15 14 13 17 17 C 1.37874 * 120.00076 * 84.81534 * 15 14 13 18 18 N 1.31519 * 119.99975 * 353.34852 * 17 15 14 19 19 Si 1.86803 * 120.00284 * 173.35593 * 17 15 14 20 20 H 1.48498 * 109.47077 * 59.99164 * 19 17 15 21 21 H 1.48500 * 109.47240 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46743 * 299.99657 * 19 17 15 23 23 C 1.52996 * 117.50195 * 254.23868 * 14 13 10 24 24 C 1.53002 * 60.00333 * 252.50966 * 23 14 13 25 25 C 1.47904 * 110.99774 * 170.00064 * 4 3 2 26 26 H 1.09004 * 109.46549 * 299.99551 * 1 2 3 27 27 H 1.08992 * 109.47499 * 59.99942 * 1 2 3 28 28 H 1.09005 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46723 * 239.99929 * 2 1 3 30 30 H 1.08999 * 109.47047 * 120.00522 * 2 1 3 31 31 H 1.08997 * 109.46815 * 59.99779 * 3 2 1 32 32 H 1.09000 * 109.47019 * 300.00643 * 3 2 1 33 33 H 1.08994 * 110.66471 * 318.71110 * 5 4 3 34 34 H 1.09000 * 110.66425 * 81.84560 * 5 4 3 35 35 H 1.09000 * 110.72613 * 279.05506 * 6 5 4 36 36 H 1.09000 * 110.72609 * 155.76941 * 6 5 4 37 37 H 0.97005 * 119.99826 * 80.71481 * 9 7 6 38 38 H 1.08995 * 109.47447 * 294.03274 * 13 10 9 39 39 H 1.09008 * 109.47186 * 54.03444 * 13 10 9 40 40 H 0.96999 * 120.00062 * 185.03549 * 18 17 15 41 41 H 1.08998 * 117.49828 * 359.97438 * 23 14 13 42 42 H 1.09005 * 117.50134 * 145.02052 * 23 14 13 43 43 H 1.09002 * 117.49974 * 252.51712 * 24 23 14 44 44 H 1.08992 * 117.49976 * 107.48537 * 24 23 14 45 45 H 1.08994 * 109.91758 * 26.49121 * 25 4 3 46 46 H 1.09002 * 110.08048 * 265.28856 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0419 1.0276 1.3223 6 6 5.4897 1.5790 1.3101 7 6 5.3385 2.9310 0.5756 8 1 5.2549 3.7462 1.2942 9 7 6.4789 3.1554 -0.3163 10 16 7.7295 4.1273 0.1672 11 8 8.6225 4.1252 -0.9382 12 8 7.0968 5.3255 0.5955 13 6 8.4615 3.2544 1.5787 14 6 9.7296 3.9836 2.0274 15 6 9.6534 5.4886 2.0131 16 1 10.0129 6.0394 1.1565 17 6 9.1248 6.1625 3.0936 18 7 8.5685 5.4919 4.0787 19 14 9.1987 8.0279 3.1584 20 1 8.4723 8.5928 1.9929 21 1 8.5661 8.5051 4.4142 22 1 10.6163 8.4687 3.1191 23 6 11.0741 3.3406 1.6817 24 6 10.5696 3.3292 3.1261 25 6 4.0389 2.8023 -0.2404 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.4647 1.4801 2.1286 34 1 4.0447 -0.0587 1.4125 35 1 6.1519 0.9121 0.7580 36 1 5.8533 1.7308 2.3264 37 1 6.5033 2.7314 -1.1884 38 1 7.7466 3.2294 2.4010 39 1 8.7132 2.2353 1.2850 40 1 8.1321 5.9669 4.8032 41 1 11.0553 2.3978 1.1350 42 1 11.9040 4.0061 1.4437 43 1 11.0674 3.9873 3.8383 44 1 10.2189 2.3792 3.5292 45 1 3.3159 3.5466 0.0929 46 1 4.2511 2.9397 -1.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595354926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:02 Heat of formation + Delta-G solvation = -52.728900 kcal Electronic energy + Delta-G solvation = -25686.683791 eV Core-core repulsion = 22124.807093 eV Total energy + Delta-G solvation = -3561.876698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.32339 -36.71351 -36.09687 -35.46219 -34.86616 -33.07000 -32.03850 -30.14578 -28.20202 -27.98494 -25.44860 -25.32155 -22.14559 -21.19017 -20.91776 -20.73076 -19.68870 -18.66812 -17.01502 -16.58445 -16.19006 -15.73191 -15.36757 -15.03183 -14.86162 -14.67496 -14.21180 -13.75397 -13.69717 -13.45502 -13.13810 -12.97571 -12.53380 -12.37427 -12.13755 -12.00829 -11.88990 -11.78598 -11.42222 -11.17911 -11.10758 -11.07135 -10.99505 -10.89777 -10.82039 -10.75924 -10.71067 -10.52910 -10.33208 -10.08636 -9.71635 -9.18836 -8.89974 -8.57056 -8.52328 -8.09900 -6.15386 -4.29778 1.22586 3.35302 3.36967 3.45191 3.59442 3.82370 4.40759 4.48699 4.58768 4.70865 4.78970 4.85784 5.05561 5.09523 5.14275 5.15284 5.20531 5.26077 5.30652 5.38038 5.45315 5.47767 5.55341 5.60982 5.76186 5.79145 5.83668 5.87364 5.93712 6.00726 6.04491 6.10665 6.30594 6.36637 6.41285 6.63150 6.71278 6.75151 6.89327 6.96657 7.18939 7.38081 7.40493 7.79187 8.19781 8.78580 9.47226 10.92105 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.003655 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.782023 B = 7658.364679 C = 7941.690952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.044 3.956 4 N -0.518 5.518 5 C 0.036 3.964 6 C -0.148 4.148 7 C 0.142 3.858 8 H 0.102 0.898 9 N -1.127 6.127 10 S 2.622 3.378 11 O -0.977 6.977 12 O -0.943 6.943 13 C -0.558 4.558 14 C 0.051 3.949 15 C -0.543 4.543 16 H 0.068 0.932 17 C 0.098 3.902 18 N -0.868 5.868 19 Si 0.890 3.110 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.205 4.205 24 C -0.144 4.144 25 C 0.033 3.967 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.265 0.735 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 -11.233 -4.683 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.084 4.084 4 N -0.242 5.242 5 C -0.092 4.092 6 C -0.188 4.188 7 C 0.033 3.967 8 H 0.120 0.880 9 N -0.882 5.882 10 S 2.718 3.282 11 O -0.967 6.967 12 O -0.933 6.933 13 C -0.691 4.691 14 C 0.049 3.951 15 C -0.580 4.580 16 H 0.086 0.914 17 C -0.109 4.109 18 N -0.502 5.502 19 Si 0.716 3.284 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.242 4.242 24 C -0.183 4.183 25 C -0.096 4.096 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.243 0.757 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.338 -10.634 -5.134 17.078 hybrid contribution -0.362 0.679 0.942 1.217 sum -12.700 -9.955 -4.192 16.672 Atomic orbital electron populations 1.21748 0.95787 1.01684 1.01750 1.21466 0.95150 0.96329 1.02671 1.22352 0.87761 0.97363 1.00965 1.64770 1.07620 1.22680 1.29142 1.23243 0.94937 1.01040 0.90007 1.23173 0.96909 0.97046 1.01639 1.21552 0.85838 0.97777 0.91580 0.87987 1.56205 1.35093 1.69916 1.26964 1.04681 0.72881 0.74702 0.75900 1.93486 1.65193 1.86907 1.51132 1.93531 1.74161 1.42220 1.83364 1.29996 1.11135 1.09616 1.18313 1.18162 0.84010 0.93138 0.99781 1.20564 1.45157 0.88284 1.04028 0.91371 1.24879 0.92983 0.98714 0.94314 1.69942 1.33689 1.36006 1.10543 0.86662 0.78545 0.85210 0.77955 1.19145 1.21012 1.19948 1.23127 1.00386 1.01058 0.99628 1.22523 1.04822 1.00165 0.90785 1.23137 0.95357 0.89664 1.01478 0.92881 0.92712 0.92605 0.91203 0.92049 0.94488 0.90888 0.93385 0.89862 0.89672 0.89925 0.75729 0.85594 0.88479 0.92558 0.91249 0.89732 0.89681 0.91651 0.92787 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.94 6.02 -26.73 -0.16 -1.10 16 3 C 0.04 0.40 4.70 -3.83 -0.02 0.38 16 4 N -0.52 -5.58 5.24 -230.46 -1.21 -6.79 16 5 C 0.04 0.37 5.91 -1.90 -0.01 0.36 16 6 C -0.15 -1.76 6.78 -24.87 -0.17 -1.92 16 7 C 0.14 1.95 3.55 -66.57 -0.24 1.71 16 8 H 0.10 1.55 7.55 -51.93 -0.39 1.16 16 9 N -1.13 -17.27 5.32 -3.74 -0.02 -17.29 16 10 S 2.62 54.89 4.62 -107.50 -0.50 54.39 16 11 O -0.98 -22.74 18.08 -57.54 -1.04 -23.78 16 12 O -0.94 -23.29 16.56 -57.54 -0.95 -24.24 16 13 C -0.56 -11.52 6.18 37.16 0.23 -11.29 16 14 C 0.05 1.24 1.64 -155.66 -0.26 0.98 16 15 C -0.54 -14.90 6.88 -34.44 -0.24 -15.13 16 16 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 17 C 0.10 2.70 5.39 -17.82 -0.10 2.60 16 18 N -0.87 -23.76 12.95 55.43 0.72 -23.04 16 19 Si 0.89 21.78 29.55 -169.99 -5.02 16.76 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.20 -4.45 9.88 -26.73 -0.26 -4.72 16 24 C -0.14 -3.26 9.49 -26.73 -0.25 -3.52 16 25 C 0.03 0.39 6.43 -2.75 -0.02 0.37 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 31 H 0.04 0.34 7.83 -51.93 -0.41 -0.07 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.05 0.48 7.81 -51.93 -0.41 0.08 16 34 H 0.08 0.77 7.80 -51.93 -0.41 0.37 16 35 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.41 5.42 8.66 -34.47 -0.30 5.13 16 38 H 0.13 2.59 8.14 -51.93 -0.42 2.17 16 39 H 0.10 1.67 7.95 -51.92 -0.41 1.26 16 40 H 0.26 6.94 8.32 -40.82 -0.34 6.61 16 41 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 43 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.05 0.61 7.77 -51.93 -0.40 0.21 16 46 H 0.09 1.03 7.78 -51.93 -0.40 0.62 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -32.12 380.57 -11.53 -43.65 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.12 Total: 6.53 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: -1.12 Total: -31.91 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.51 Total: -47.12 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.99 Total: -48.03 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.50 Total: 54.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.12 -11.53 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595354926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.079 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds