Wall clock time and date at job start Tue Mar 31 2020 11:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47448 * 2 1 4 4 N 1.46897 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.48535 * 111.00044 * 287.39766 * 4 3 2 6 6 C 1.54934 * 103.22602 * 200.27959 * 5 4 3 7 7 C 1.54600 * 102.92200 * 37.41250 * 6 5 4 8 8 H 1.08997 * 110.38795 * 97.00347 * 7 6 5 9 9 N 1.46499 * 110.30858 * 219.12439 * 7 6 5 10 10 S 1.65596 * 120.00301 * 260.99509 * 9 7 6 11 11 O 1.42104 * 104.28118 * 180.79877 * 10 9 7 12 12 O 1.42106 * 104.27750 * 308.65380 * 10 9 7 13 13 C 1.81394 * 104.45161 * 64.72147 * 10 9 7 14 14 C 1.52999 * 109.47280 * 174.02807 * 13 10 9 15 15 C 1.50703 * 115.54731 * 39.94744 * 14 13 10 16 16 H 1.07996 * 120.00007 * 264.80687 * 15 14 13 17 17 C 1.37874 * 120.00076 * 84.81534 * 15 14 13 18 18 N 1.31519 * 119.99975 * 353.34852 * 17 15 14 19 19 Si 1.86803 * 120.00284 * 173.35593 * 17 15 14 20 20 H 1.48498 * 109.47077 * 59.99164 * 19 17 15 21 21 H 1.48500 * 109.47240 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46743 * 299.99657 * 19 17 15 23 23 C 1.52996 * 117.50195 * 254.23868 * 14 13 10 24 24 C 1.53002 * 60.00333 * 252.50966 * 23 14 13 25 25 C 1.47904 * 110.99774 * 170.00064 * 4 3 2 26 26 H 1.09004 * 109.46549 * 299.99551 * 1 2 3 27 27 H 1.08992 * 109.47499 * 59.99942 * 1 2 3 28 28 H 1.09005 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46723 * 239.99929 * 2 1 3 30 30 H 1.08999 * 109.47047 * 120.00522 * 2 1 3 31 31 H 1.08997 * 109.46815 * 59.99779 * 3 2 1 32 32 H 1.09000 * 109.47019 * 300.00643 * 3 2 1 33 33 H 1.08994 * 110.66471 * 318.71110 * 5 4 3 34 34 H 1.09000 * 110.66425 * 81.84560 * 5 4 3 35 35 H 1.09000 * 110.72613 * 279.05506 * 6 5 4 36 36 H 1.09000 * 110.72609 * 155.76941 * 6 5 4 37 37 H 0.97005 * 119.99826 * 80.71481 * 9 7 6 38 38 H 1.08995 * 109.47447 * 294.03274 * 13 10 9 39 39 H 1.09008 * 109.47186 * 54.03444 * 13 10 9 40 40 H 0.96999 * 120.00062 * 185.03549 * 18 17 15 41 41 H 1.08998 * 117.49828 * 359.97438 * 23 14 13 42 42 H 1.09005 * 117.50134 * 145.02052 * 23 14 13 43 43 H 1.09002 * 117.49974 * 252.51712 * 24 23 14 44 44 H 1.08992 * 117.49976 * 107.48537 * 24 23 14 45 45 H 1.08994 * 109.91758 * 26.49121 * 25 4 3 46 46 H 1.09002 * 110.08048 * 265.28856 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0419 1.0276 1.3223 6 6 5.4897 1.5790 1.3101 7 6 5.3385 2.9310 0.5756 8 1 5.2549 3.7462 1.2942 9 7 6.4789 3.1554 -0.3163 10 16 7.7295 4.1273 0.1672 11 8 8.6225 4.1252 -0.9382 12 8 7.0968 5.3255 0.5955 13 6 8.4615 3.2544 1.5787 14 6 9.7296 3.9836 2.0274 15 6 9.6534 5.4886 2.0131 16 1 10.0129 6.0394 1.1565 17 6 9.1248 6.1625 3.0936 18 7 8.5685 5.4919 4.0787 19 14 9.1987 8.0279 3.1584 20 1 8.4723 8.5928 1.9929 21 1 8.5661 8.5051 4.4142 22 1 10.6163 8.4687 3.1191 23 6 11.0741 3.3406 1.6817 24 6 10.5696 3.3292 3.1261 25 6 4.0389 2.8023 -0.2404 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.4647 1.4801 2.1286 34 1 4.0447 -0.0587 1.4125 35 1 6.1519 0.9121 0.7580 36 1 5.8533 1.7308 2.3264 37 1 6.5033 2.7314 -1.1884 38 1 7.7466 3.2294 2.4010 39 1 8.7132 2.2353 1.2850 40 1 8.1321 5.9669 4.8032 41 1 11.0553 2.3978 1.1350 42 1 11.9040 4.0061 1.4437 43 1 11.0674 3.9873 3.8383 44 1 10.2189 2.3792 3.5292 45 1 3.3159 3.5466 0.0929 46 1 4.2511 2.9397 -1.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595354926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:02 Heat of formation + Delta-G solvation = -75.713375 kcal Electronic energy + Delta-G solvation = -25687.680473 eV Core-core repulsion = 22124.807093 eV Total energy + Delta-G solvation = -3562.873380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.24091 -38.51856 -37.84471 -36.69524 -36.36048 -34.10295 -33.95763 -31.03461 -29.83584 -28.99711 -27.47682 -26.08893 -22.94857 -22.88552 -21.95391 -21.54305 -21.44098 -20.28931 -18.59845 -18.25697 -17.49781 -16.86157 -16.64149 -16.60304 -16.23134 -16.01764 -15.66754 -15.29508 -14.86503 -14.49703 -14.24973 -14.07100 -13.91301 -13.71365 -13.45723 -13.19848 -13.07055 -12.97992 -12.90567 -12.81422 -12.77891 -12.65367 -12.42669 -12.21406 -12.08867 -12.06342 -11.88952 -11.85508 -11.68530 -11.54492 -11.44529 -10.86995 -10.54029 -10.38167 -9.88337 -9.40391 -8.22324 -6.39360 -0.41205 1.36171 1.40112 1.46089 2.14365 2.40010 2.99030 3.05814 3.09066 3.36341 3.51565 3.59395 3.75024 3.99095 4.07099 4.11715 4.22350 4.31489 4.33770 4.44401 4.46610 4.53271 4.61790 4.63403 4.65047 4.70783 4.82525 4.85580 4.91883 4.93811 5.00416 5.03660 5.14245 5.22320 5.23037 5.29712 5.35176 5.42331 5.45440 5.62952 5.69309 5.88600 6.09678 6.20701 6.22484 6.69138 7.38062 8.84262 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.003655 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.782023 B = 7658.364679 C = 7941.690952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.042 3.958 4 N -0.520 5.520 5 C 0.039 3.961 6 C -0.146 4.146 7 C 0.132 3.868 8 H 0.082 0.918 9 N -1.108 6.108 10 S 2.631 3.369 11 O -1.006 7.006 12 O -0.990 6.990 13 C -0.549 4.549 14 C 0.015 3.985 15 C -0.559 4.559 16 H 0.046 0.954 17 C 0.062 3.938 18 N -0.881 5.881 19 Si 0.923 3.077 20 H -0.280 1.280 21 H -0.271 1.271 22 H -0.265 1.265 23 C -0.192 4.192 24 C -0.140 4.140 25 C 0.036 3.964 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.422 0.578 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.267 0.733 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 -13.239 -4.731 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.086 4.086 4 N -0.245 5.245 5 C -0.089 4.089 6 C -0.186 4.186 7 C 0.024 3.976 8 H 0.101 0.899 9 N -0.867 5.867 10 S 2.728 3.272 11 O -0.996 6.996 12 O -0.979 6.979 13 C -0.682 4.682 14 C 0.013 3.987 15 C -0.597 4.597 16 H 0.064 0.936 17 C -0.144 4.144 18 N -0.516 5.516 19 Si 0.749 3.251 20 H -0.206 1.206 21 H -0.195 1.195 22 H -0.190 1.190 23 C -0.229 4.229 24 C -0.179 4.179 25 C -0.094 4.094 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.258 0.742 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.182 -12.638 -5.189 18.985 hybrid contribution -0.120 1.269 0.922 1.573 sum -13.302 -11.369 -4.268 18.011 Atomic orbital electron populations 1.21729 0.94842 1.02247 1.01923 1.21423 0.95923 0.95289 1.02486 1.22427 0.86729 0.98332 1.01126 1.64815 1.08656 1.21591 1.29435 1.23270 0.93795 1.01921 0.89912 1.23172 0.98263 0.95817 1.01352 1.21730 0.85964 0.98389 0.91497 0.89944 1.55634 1.34157 1.69190 1.27764 1.04060 0.73003 0.74604 0.75484 1.93435 1.66518 1.87491 1.52164 1.93472 1.75108 1.45354 1.84004 1.29840 1.09489 1.11103 1.17781 1.18309 0.86379 0.92010 1.01990 1.20718 1.45061 0.90566 1.03332 0.93597 1.25380 0.93121 1.01425 0.94427 1.69966 1.34141 1.36728 1.10741 0.86143 0.78876 0.82258 0.77866 1.20568 1.19506 1.19020 1.23213 0.98659 1.01916 0.99129 1.22467 1.04215 1.00456 0.90715 1.23082 0.94392 0.90665 1.01260 0.92771 0.92501 0.91866 0.91605 0.91961 0.94441 0.90647 0.93091 0.88292 0.88852 0.89968 0.74181 0.85651 0.84605 0.92420 0.88046 0.90347 0.91841 0.89358 0.92529 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.11 -1.55 6.02 30.59 0.18 -1.37 16 3 C 0.04 0.68 4.70 86.30 0.41 1.09 16 4 N -0.52 -10.13 5.24 -883.06 -4.63 -14.77 16 5 C 0.04 0.71 5.91 86.65 0.51 1.23 16 6 C -0.15 -3.17 6.78 31.80 0.22 -2.95 16 7 C 0.13 3.51 3.55 45.87 0.16 3.67 16 8 H 0.08 2.52 7.55 -2.39 -0.02 2.51 16 9 N -1.11 -32.82 5.32 -165.74 -0.88 -33.70 16 10 S 2.63 109.73 4.62 -56.49 -0.26 109.47 16 11 O -1.01 -46.72 18.08 -127.65 -2.31 -49.03 16 12 O -0.99 -50.05 16.56 -127.65 -2.11 -52.16 16 13 C -0.55 -21.86 6.18 71.98 0.44 -21.42 16 14 C 0.02 0.72 1.64 -52.93 -0.09 0.63 16 15 C -0.56 -31.09 6.88 25.60 0.18 -30.92 16 16 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 17 C 0.06 3.42 5.39 84.65 0.46 3.88 16 18 N -0.88 -48.34 12.95 21.45 0.28 -48.06 16 19 Si 0.92 44.88 29.55 68.60 2.03 46.91 16 20 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.19 -8.00 9.88 30.59 0.30 -7.70 16 24 C -0.14 -6.13 9.49 30.60 0.29 -5.83 16 25 C 0.04 0.80 6.43 86.44 0.56 1.35 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 0.85 7.37 -2.39 -0.02 0.83 16 31 H 0.04 0.62 7.83 -2.39 -0.02 0.60 16 32 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.05 0.91 7.81 -2.39 -0.02 0.89 16 34 H 0.10 1.54 7.80 -2.39 -0.02 1.52 16 35 H 0.09 1.88 8.06 -2.39 -0.02 1.86 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 10.53 8.66 -96.74 -0.84 9.70 16 38 H 0.13 5.01 8.14 -2.39 -0.02 4.99 16 39 H 0.14 4.24 7.95 -2.39 -0.02 4.22 16 40 H 0.27 13.98 8.32 -92.71 -0.77 13.21 16 41 H 0.10 3.54 8.08 -2.39 -0.02 3.52 16 42 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 43 H 0.06 3.02 8.14 -2.39 -0.02 3.01 16 44 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.06 1.23 7.77 -2.39 -0.02 1.21 16 46 H 0.09 1.98 7.78 -2.39 -0.02 1.97 16 Total: -1.00 -68.94 380.57 -3.45 -72.38 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.11 Total: 28.28 kcal Atomic # 6 Polarization: -63.65 SS G_CDS: 4.33 Total: -59.32 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -5.23 Total: -96.53 kcal Atomic # 8 Polarization: -96.76 SS G_CDS: -4.42 Total: -101.19 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 109.73 SS G_CDS: -0.26 Total: 109.47 kcal Total: -68.94 -3.45 -72.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595354926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.329 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds