Wall clock time and date at job start Tue Mar 31 2020 11:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 N 1.46905 * 109.46874 * 180.02562 * 3 2 1 5 5 C 1.48534 * 110.99946 * 307.39881 * 4 3 2 6 6 C 1.54937 * 103.22672 * 200.28044 * 5 4 3 7 7 C 1.54602 * 102.92057 * 37.41182 * 6 5 4 8 8 H 1.09001 * 110.39096 * 219.08398 * 7 6 5 9 9 N 1.46499 * 110.30387 * 96.96242 * 7 6 5 10 10 S 1.65597 * 120.00152 * 99.28432 * 9 7 6 11 11 O 1.42100 * 104.28048 * 308.92455 * 10 9 7 12 12 O 1.42106 * 104.27836 * 181.06538 * 10 9 7 13 13 C 1.81408 * 104.44980 * 64.99817 * 10 9 7 14 14 C 1.52998 * 109.47175 * 188.45273 * 13 10 9 15 15 C 1.50702 * 115.56249 * 319.83827 * 14 13 10 16 16 H 1.07998 * 119.99969 * 99.69905 * 15 14 13 17 17 C 1.37874 * 119.99986 * 279.69927 * 15 14 13 18 18 N 1.31516 * 120.00314 * 190.37731 * 17 15 14 19 19 Si 1.86802 * 119.99739 * 10.37957 * 17 15 14 20 20 H 1.48496 * 109.47404 * 86.23068 * 19 17 15 21 21 H 1.48504 * 109.47029 * 206.23071 * 19 17 15 22 22 H 1.48498 * 109.47422 * 326.22742 * 19 17 15 23 23 C 1.52997 * 117.49808 * 174.14758 * 14 13 10 24 24 C 1.53005 * 117.49979 * 105.52236 * 14 13 10 25 25 C 1.47899 * 110.99880 * 190.00154 * 4 3 2 26 26 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47160 * 299.99991 * 1 2 3 28 28 H 1.09000 * 109.47135 * 59.99547 * 1 2 3 29 29 H 1.08997 * 109.46902 * 240.00335 * 2 1 3 30 30 H 1.09000 * 109.47135 * 120.00453 * 2 1 3 31 31 H 1.08997 * 109.46922 * 60.00347 * 3 2 1 32 32 H 1.09000 * 109.47449 * 300.00261 * 3 2 1 33 33 H 1.09001 * 110.66882 * 318.71614 * 5 4 3 34 34 H 1.08992 * 110.66788 * 81.67886 * 5 4 3 35 35 H 1.09003 * 110.72430 * 279.05860 * 6 5 4 36 36 H 1.08994 * 110.72491 * 155.77053 * 6 5 4 37 37 H 0.97006 * 120.00089 * 279.27752 * 9 7 6 38 38 H 1.08998 * 109.46812 * 68.45375 * 13 10 9 39 39 H 1.08995 * 109.46779 * 308.45118 * 13 10 9 40 40 H 0.97001 * 119.99867 * 180.02562 * 18 17 15 41 41 H 1.09004 * 117.49946 * 145.02321 * 23 14 13 42 42 H 1.08994 * 117.50126 * 359.97438 * 23 14 13 43 43 H 1.09000 * 117.49352 * 0.02562 * 24 14 13 44 44 H 1.08992 * 117.49852 * 214.98017 * 24 14 13 45 45 H 1.09008 * 109.91683 * 26.49197 * 25 4 3 46 46 H 1.08999 * 110.08604 * 265.28839 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0418 0.6000 1.1007 6 6 5.4897 1.1221 1.2778 7 6 5.3388 2.6438 1.0500 8 1 6.1871 3.0291 0.4842 9 7 5.2256 3.3412 2.3334 10 16 6.5512 4.0836 2.9920 11 8 7.5606 3.0837 2.9691 12 8 6.0786 4.6196 4.2203 13 6 6.9490 5.4164 1.8273 14 6 8.2866 6.0499 2.2146 15 6 8.5145 6.2354 3.6927 16 1 9.1207 5.5277 4.2387 17 6 7.9491 7.3086 4.3481 18 7 8.3072 7.5886 5.5822 19 14 6.6742 8.3650 3.4831 20 1 5.3287 7.7627 3.6615 21 1 6.6861 9.7312 4.0650 22 1 6.9944 8.4411 2.0350 23 6 8.8672 7.1062 1.2723 24 6 9.5033 5.7167 1.3487 25 6 4.0393 2.8021 0.2392 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.4646 0.7495 2.0131 34 1 4.0417 -0.4518 0.8150 35 1 6.1518 0.6841 0.5308 36 1 5.8532 0.9170 2.2846 37 1 4.3742 3.3681 2.7973 38 1 6.1654 6.1733 1.8600 39 1 7.0185 5.0087 0.8188 40 1 7.9091 8.3434 6.0433 41 1 9.4140 7.9354 1.7214 42 1 8.2964 7.3495 0.3762 43 1 9.3505 5.0465 0.5028 44 1 10.4683 5.6318 1.8481 45 1 3.3163 3.3878 0.8071 46 1 4.2515 3.2939 -0.7101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595354927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:05 Heat of formation + Delta-G solvation = -72.590303 kcal Electronic energy + Delta-G solvation = -25781.706715 eV Core-core repulsion = 22218.968762 eV Total energy + Delta-G solvation = -3562.737953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33824 -38.78483 -37.92322 -36.76612 -36.38753 -34.34649 -33.87126 -31.01719 -30.16448 -29.11658 -27.61117 -26.08288 -23.26665 -23.18733 -21.97050 -21.45709 -21.18774 -20.24056 -18.69374 -18.38996 -17.56604 -17.14296 -16.87346 -16.61022 -16.33696 -15.98585 -15.50267 -15.24196 -14.92687 -14.90654 -14.51106 -14.31741 -14.17566 -13.87752 -13.29388 -13.17914 -13.11247 -12.99600 -12.88091 -12.86809 -12.77090 -12.73879 -12.28413 -12.23346 -12.13076 -12.04773 -11.95357 -11.83411 -11.64640 -11.59121 -11.52652 -10.82915 -10.79410 -10.48576 -10.16638 -9.39316 -8.38225 -6.53263 -0.55072 1.31702 1.33952 1.45036 2.03545 2.33487 2.97305 2.99336 3.04410 3.12559 3.45390 3.54867 3.70064 3.80950 4.02935 4.09464 4.12092 4.17958 4.31640 4.36539 4.41436 4.45243 4.47550 4.48361 4.61273 4.65752 4.77278 4.84822 4.87779 4.92334 4.93140 4.95260 5.04348 5.17421 5.20318 5.21627 5.27297 5.31598 5.41200 5.52820 5.62225 5.84347 6.04954 6.13052 6.17436 6.62304 7.24535 8.78070 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.003712 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.705531 B = 7542.121073 C = 7750.542784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.043 3.957 4 N -0.519 5.519 5 C 0.038 3.962 6 C -0.143 4.143 7 C 0.130 3.870 8 H 0.109 0.891 9 N -1.114 6.114 10 S 2.624 3.376 11 O -0.993 6.993 12 O -0.996 6.996 13 C -0.575 4.575 14 C -0.032 4.032 15 C -0.542 4.542 16 H 0.028 0.972 17 C 0.046 3.954 18 N -0.932 5.932 19 Si 0.901 3.099 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.195 1.195 23 C -0.160 4.160 24 C -0.166 4.166 25 C 0.030 3.970 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.418 0.582 38 H 0.129 0.871 39 H 0.163 0.837 40 H 0.269 0.731 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 -11.230 -17.897 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.085 4.085 4 N -0.243 5.243 5 C -0.090 4.090 6 C -0.183 4.183 7 C 0.023 3.977 8 H 0.127 0.873 9 N -0.873 5.873 10 S 2.721 3.279 11 O -0.983 6.983 12 O -0.986 6.986 13 C -0.707 4.707 14 C -0.034 4.034 15 C -0.579 4.579 16 H 0.046 0.954 17 C -0.155 4.155 18 N -0.569 5.569 19 Si 0.722 3.278 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.117 1.117 23 C -0.199 4.199 24 C -0.203 4.203 25 C -0.099 4.099 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.180 0.820 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.196 -11.602 -17.525 25.363 hybrid contribution -0.910 1.272 1.408 2.104 sum -15.106 -10.330 -16.117 24.386 Atomic orbital electron populations 1.21723 0.94799 1.02222 1.01984 1.21562 0.96295 0.95643 1.02482 1.22442 0.86798 0.98035 1.01212 1.64921 1.08505 1.07938 1.42987 1.23239 0.94026 0.99059 0.92678 1.23031 0.97675 0.94811 1.02764 1.21857 1.00069 0.93049 0.82736 0.87322 1.55869 1.28122 1.69650 1.33705 1.04293 0.73003 0.75393 0.75212 1.93453 1.59937 1.57642 1.87261 1.93513 1.80335 1.81261 1.43455 1.30121 1.06542 1.16932 1.17109 1.18652 0.89771 1.03561 0.91432 1.20561 1.33983 1.11583 0.91818 0.95363 1.25854 0.97067 0.97681 0.94927 1.70050 1.43120 1.29364 1.14362 0.86486 0.80149 0.77690 0.83522 1.18790 1.21272 1.11666 1.23060 1.03757 0.92254 1.00785 1.23072 0.96672 0.99033 1.01506 1.23301 0.94554 0.91366 1.00715 0.92000 0.93014 0.92133 0.91178 0.92233 0.94907 0.89844 0.94024 0.88768 0.88682 0.91646 0.74724 0.85331 0.81952 0.92205 0.90595 0.86747 0.86464 0.90703 0.92071 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.54 5.59 30.59 0.17 -1.37 16 3 C 0.04 0.61 5.03 86.30 0.43 1.05 16 4 N -0.52 -8.68 5.40 -883.02 -4.76 -13.45 16 5 C 0.04 0.67 5.11 86.65 0.44 1.12 16 6 C -0.14 -3.09 6.78 31.80 0.22 -2.88 16 7 C 0.13 2.79 3.43 45.87 0.16 2.94 16 8 H 0.11 2.02 7.11 -2.39 -0.02 2.01 16 9 N -1.11 -30.39 5.32 -165.73 -0.88 -31.27 16 10 S 2.62 105.73 4.50 -56.49 -0.25 105.47 16 11 O -0.99 -45.23 17.82 -127.65 -2.27 -47.50 16 12 O -1.00 -50.84 17.37 -127.65 -2.22 -53.06 16 13 C -0.57 -20.05 5.69 71.98 0.41 -19.64 16 14 C -0.03 -1.39 1.11 -52.93 -0.06 -1.44 16 15 C -0.54 -31.36 7.54 25.60 0.19 -31.16 16 16 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 17 C 0.05 2.74 5.47 84.65 0.46 3.20 16 18 N -0.93 -60.20 13.96 21.45 0.30 -59.90 16 19 Si 0.90 41.91 25.37 68.60 1.74 43.65 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.20 -7.46 5.60 99.48 0.56 -6.91 16 23 C -0.16 -5.89 7.56 30.60 0.23 -5.66 16 24 C -0.17 -6.17 9.88 30.60 0.30 -5.87 16 25 C 0.03 0.50 6.47 86.45 0.56 1.06 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.80 6.79 -2.39 -0.02 0.78 16 31 H 0.03 0.49 7.81 -2.39 -0.02 0.47 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.77 8.00 -2.39 -0.02 0.76 16 34 H 0.09 1.48 7.65 -2.39 -0.02 1.46 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 37 H 0.42 10.16 8.64 -96.74 -0.84 9.32 16 38 H 0.13 4.16 6.15 -2.39 -0.01 4.15 16 39 H 0.16 3.82 7.12 -2.39 -0.02 3.80 16 40 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 41 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.12 3.38 8.09 -2.39 -0.02 3.36 16 44 H 0.07 3.01 8.14 -2.39 -0.02 3.00 16 45 H 0.06 0.98 7.19 -2.38 -0.02 0.96 16 46 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -80.00 369.50 -4.15 -84.15 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.03 Total: 31.42 kcal Atomic # 6 Polarization: -63.74 SS G_CDS: 4.23 Total: -59.51 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.35 Total: -104.61 kcal Atomic # 8 Polarization: -96.07 SS G_CDS: -4.49 Total: -100.56 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.74 Total: 43.65 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -0.25 Total: 105.47 kcal Total: -80.00 -4.15 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595354927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.556 kcal (2) G-P(sol) polarization free energy of solvation -79.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds